data_6BN1 # _model_server_result.job_id Kxj8EHkmV01WpeghKM2yyg _model_server_result.datetime_utc '2024-12-21 16:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6BN1 # _exptl.entry_id 6BN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BN1 _cell.length_a 49.934 _cell.length_b 49.934 _cell.length_c 186.169 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,C,D,E,H 2 1,3 B,F,G,I 2 2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_564 -y,x+1,z-1/4 0 -1 0 1 0 0 0 0 1 0 49.934 -46.54225 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 7_565 y,x+1,-z+1/4 0 1 0 1 0 0 0 0 -1 0 49.934 46.54225 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 622 1_555 A SG CYS 19 A CYS 622 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A ND1 HIS 23 A HIS 626 1_555 F NI NI . B NI 701 7_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc2 B N LEU 1 B LEU 531 1_555 F NI NI . B NI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BN1 _atom_sites.fract_transf_matrix[1][1] 0.020027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 701 1 MPD MPD . D 3 MPD A 1 702 3 MPD MPD . E 3 MPD A 1 703 4 MPD MPD . F 4 NI B 1 701 1 NI NI . G 3 MPD B 1 702 2 MPD MPD . H 5 HOH A 1 801 48 HOH HOH . H 5 HOH A 2 802 15 HOH HOH . H 5 HOH A 3 803 2 HOH HOH . H 5 HOH A 4 804 18 HOH HOH . H 5 HOH A 5 805 6 HOH HOH . H 5 HOH A 6 806 24 HOH HOH . H 5 HOH A 7 807 11 HOH HOH . H 5 HOH A 8 808 26 HOH HOH . H 5 HOH A 9 809 8 HOH HOH . H 5 HOH A 10 810 20 HOH HOH . H 5 HOH A 11 811 19 HOH HOH . H 5 HOH A 12 812 4 HOH HOH . H 5 HOH A 13 813 14 HOH HOH . H 5 HOH A 14 814 50 HOH HOH . H 5 HOH A 15 815 28 HOH HOH . H 5 HOH A 16 816 51 HOH HOH . I 5 HOH B 1 801 35 HOH HOH . I 5 HOH B 2 802 16 HOH HOH . I 5 HOH B 3 803 13 HOH HOH . I 5 HOH B 4 804 23 HOH HOH . I 5 HOH B 5 805 37 HOH HOH . I 5 HOH B 6 806 10 HOH HOH . I 5 HOH B 7 807 56 HOH HOH . I 5 HOH B 8 808 3 HOH HOH . I 5 HOH B 9 809 12 HOH HOH . I 5 HOH B 10 810 34 HOH HOH . I 5 HOH B 11 811 25 HOH HOH . I 5 HOH B 12 812 27 HOH HOH . I 5 HOH B 13 813 41 HOH HOH . I 5 HOH B 14 814 42 HOH HOH . I 5 HOH B 15 815 57 HOH HOH . I 5 HOH B 16 816 1 HOH HOH . I 5 HOH B 17 817 33 HOH HOH . I 5 HOH B 18 818 47 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -28.634 _atom_site.Cartn_y -0.045 _atom_site.Cartn_z 34.586 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 79.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 701 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #