data_6BNE # _model_server_result.job_id PK8SqYy7kF7R1WLQ75cEZw _model_server_result.datetime_utc '2024-11-23 13:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 6BNE # _exptl.entry_id 6BNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BNE _cell.length_a 147.524 _cell.length_b 147.524 _cell.length_c 147.524 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 156 A CYS 390 1_555 A SG CYS 164 A CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 214 A CYS 448 1_555 A SG CYS 222 A CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6BNE _atom_sites.fract_transf_matrix[1][1] 0.006779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 601 SO4 SO4 . C 2 SO4 A 1 602 602 SO4 SO4 . D 2 SO4 A 1 603 603 SO4 SO4 . E 3 GOL A 1 604 604 GOL GOL . F 4 PO4 A 1 605 605 PO4 PO4 . G 5 ACT A 1 606 606 ACT ACT . H 6 HOH A 1 701 701 HOH HOH . H 6 HOH A 2 702 702 HOH HOH . H 6 HOH A 3 703 703 HOH HOH . H 6 HOH A 4 704 704 HOH HOH . H 6 HOH A 5 705 705 HOH HOH . H 6 HOH A 6 706 706 HOH HOH . H 6 HOH A 7 707 707 HOH HOH . H 6 HOH A 8 708 708 HOH HOH . H 6 HOH A 9 709 709 HOH HOH . H 6 HOH A 10 710 710 HOH HOH . H 6 HOH A 11 711 711 HOH HOH . H 6 HOH A 12 712 712 HOH HOH . H 6 HOH A 13 713 713 HOH HOH . H 6 HOH A 14 714 714 HOH HOH . H 6 HOH A 15 715 715 HOH HOH . H 6 HOH A 16 716 716 HOH HOH . H 6 HOH A 17 717 717 HOH HOH . H 6 HOH A 18 718 718 HOH HOH . H 6 HOH A 19 719 719 HOH HOH . H 6 HOH A 20 720 720 HOH HOH . H 6 HOH A 21 721 721 HOH HOH . H 6 HOH A 22 722 722 HOH HOH . H 6 HOH A 23 723 723 HOH HOH . H 6 HOH A 24 724 724 HOH HOH . H 6 HOH A 25 725 725 HOH HOH . H 6 HOH A 26 726 726 HOH HOH . H 6 HOH A 27 727 727 HOH HOH . H 6 HOH A 28 728 728 HOH HOH . H 6 HOH A 29 729 729 HOH HOH . H 6 HOH A 30 730 730 HOH HOH . H 6 HOH A 31 731 731 HOH HOH . H 6 HOH A 32 732 732 HOH HOH . H 6 HOH A 33 733 733 HOH HOH . H 6 HOH A 34 734 734 HOH HOH . H 6 HOH A 35 735 735 HOH HOH . H 6 HOH A 36 736 736 HOH HOH . H 6 HOH A 37 737 737 HOH HOH . H 6 HOH A 38 738 738 HOH HOH . H 6 HOH A 39 739 739 HOH HOH . H 6 HOH A 40 740 740 HOH HOH . H 6 HOH A 41 741 741 HOH HOH . H 6 HOH A 42 742 742 HOH HOH . H 6 HOH A 43 743 743 HOH HOH . H 6 HOH A 44 744 744 HOH HOH . H 6 HOH A 45 745 745 HOH HOH . H 6 HOH A 46 746 746 HOH HOH . H 6 HOH A 47 747 747 HOH HOH . H 6 HOH A 48 748 748 HOH HOH . H 6 HOH A 49 749 749 HOH HOH . H 6 HOH A 50 750 750 HOH HOH . H 6 HOH A 51 751 751 HOH HOH . H 6 HOH A 52 752 752 HOH HOH . H 6 HOH A 53 753 753 HOH HOH . H 6 HOH A 54 754 754 HOH HOH . H 6 HOH A 55 755 755 HOH HOH . H 6 HOH A 56 756 756 HOH HOH . H 6 HOH A 57 757 757 HOH HOH . H 6 HOH A 58 758 758 HOH HOH . H 6 HOH A 59 759 760 HOH HOH . H 6 HOH A 60 760 761 HOH HOH . H 6 HOH A 61 761 762 HOH HOH . H 6 HOH A 62 762 763 HOH HOH . H 6 HOH A 63 763 764 HOH HOH . H 6 HOH A 64 764 765 HOH HOH . H 6 HOH A 65 765 766 HOH HOH . H 6 HOH A 66 766 767 HOH HOH . H 6 HOH A 67 767 768 HOH HOH . H 6 HOH A 68 768 769 HOH HOH . H 6 HOH A 69 769 770 HOH HOH . H 6 HOH A 70 770 771 HOH HOH . H 6 HOH A 71 771 772 HOH HOH . H 6 HOH A 72 772 773 HOH HOH . H 6 HOH A 73 773 774 HOH HOH . H 6 HOH A 74 774 775 HOH HOH . H 6 HOH A 75 775 776 HOH HOH . H 6 HOH A 76 776 777 HOH HOH . H 6 HOH A 77 777 779 HOH HOH . H 6 HOH A 78 778 780 HOH HOH . H 6 HOH A 79 779 781 HOH HOH . H 6 HOH A 80 780 782 HOH HOH . H 6 HOH A 81 781 783 HOH HOH . H 6 HOH A 82 782 784 HOH HOH . H 6 HOH A 83 783 785 HOH HOH . H 6 HOH A 84 784 786 HOH HOH . H 6 HOH A 85 785 787 HOH HOH . H 6 HOH A 86 786 788 HOH HOH . H 6 HOH A 87 787 789 HOH HOH . H 6 HOH A 88 788 790 HOH HOH . H 6 HOH A 89 789 791 HOH HOH . H 6 HOH A 90 790 792 HOH HOH . H 6 HOH A 91 791 793 HOH HOH . H 6 HOH A 92 792 794 HOH HOH . H 6 HOH A 93 793 795 HOH HOH . H 6 HOH A 94 794 796 HOH HOH . H 6 HOH A 95 795 797 HOH HOH . H 6 HOH A 96 796 798 HOH HOH . H 6 HOH A 97 797 799 HOH HOH . H 6 HOH A 98 798 800 HOH HOH . H 6 HOH A 99 799 801 HOH HOH . H 6 HOH A 100 800 802 HOH HOH . H 6 HOH A 101 801 803 HOH HOH . H 6 HOH A 102 802 804 HOH HOH . H 6 HOH A 103 803 805 HOH HOH . H 6 HOH A 104 804 806 HOH HOH . H 6 HOH A 105 805 778 HOH HOH . H 6 HOH A 106 806 807 HOH HOH . H 6 HOH A 107 807 808 HOH HOH . H 6 HOH A 108 808 809 HOH HOH . H 6 HOH A 109 809 810 HOH HOH . H 6 HOH A 110 810 811 HOH HOH . H 6 HOH A 111 811 812 HOH HOH . H 6 HOH A 112 812 813 HOH HOH . H 6 HOH A 113 813 814 HOH HOH . H 6 HOH A 114 814 815 HOH HOH . H 6 HOH A 115 815 816 HOH HOH . H 6 HOH A 116 816 817 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -9.827 50.961 -19.687 1 98.98 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 3 -8.932 51.865 -19.079 1 98.64 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 3 -9.434 49.534 -19.324 1 95.51 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 3 -8.667 49.545 -18.141 1 98.23 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 3 -10.691 48.699 -19.108 1 86.35 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 3 -10.327 47.369 -18.81 1 76.22 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #