data_6BNF
#
_model_server_result.job_id            XOaRXdz75503o0fvAD1B_A 
_model_server_result.datetime_utc      '2024-11-05 10:40:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bnf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":612}' 
#
_entry.id    6BNF 
#
_exptl.entry_id    6BNF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BNF 
_cell.length_a            148.272 
_cell.length_b            148.272 
_cell.length_c            148.272 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BNF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 156 A CYS 390 1_555 A SG CYS 164 A CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 214 A CYS 448 1_555 A SG CYS 222 A CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 A OE2 GLU 39 A GLU 273 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A OG1 THR 81 A THR 315 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc3 A OD2 ASP 264 A ASP 498 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc4 A NE2 HIS 265 A HIS 499 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6BNF 
_atom_sites.fract_transf_matrix[1][1]    0.006744 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 601 601 PO4 PO4 . 
C 3 ZN A 1 602 602 ZN ZN . 
D 4 SO4 A 1 603 603 SO4 SO4 . 
E 5 ACT A 1 604 604 ACT ACT . 
F 5 ACT A 1 605 605 ACT ACT . 
G 5 ACT A 1 606 606 ACT ACT . 
H 5 ACT A 1 607 607 ACT ACT . 
I 5 ACT A 1 608 608 ACT ACT . 
J 5 ACT A 1 609 609 ACT ACT . 
K 6 GOL A 1 610 610 GOL GOL . 
L 6 GOL A 1 611 611 GOL GOL . 
M 6 GOL A 1 612 612 GOL GOL . 
N 7 HOH A 1 701 701 HOH HOH . 
N 7 HOH A 2 702 702 HOH HOH . 
N 7 HOH A 3 703 703 HOH HOH . 
N 7 HOH A 4 704 704 HOH HOH . 
N 7 HOH A 5 705 705 HOH HOH . 
N 7 HOH A 6 706 706 HOH HOH . 
N 7 HOH A 7 707 707 HOH HOH . 
N 7 HOH A 8 708 708 HOH HOH . 
N 7 HOH A 9 709 709 HOH HOH . 
N 7 HOH A 10 710 710 HOH HOH . 
N 7 HOH A 11 711 711 HOH HOH . 
N 7 HOH A 12 712 712 HOH HOH . 
N 7 HOH A 13 713 713 HOH HOH . 
N 7 HOH A 14 714 714 HOH HOH . 
N 7 HOH A 15 715 715 HOH HOH . 
N 7 HOH A 16 716 716 HOH HOH . 
N 7 HOH A 17 717 717 HOH HOH . 
N 7 HOH A 18 718 718 HOH HOH . 
N 7 HOH A 19 719 719 HOH HOH . 
N 7 HOH A 20 720 720 HOH HOH . 
N 7 HOH A 21 721 721 HOH HOH . 
N 7 HOH A 22 722 722 HOH HOH . 
N 7 HOH A 23 723 723 HOH HOH . 
N 7 HOH A 24 724 724 HOH HOH . 
N 7 HOH A 25 725 725 HOH HOH . 
N 7 HOH A 26 726 726 HOH HOH . 
N 7 HOH A 27 727 727 HOH HOH . 
N 7 HOH A 28 728 728 HOH HOH . 
N 7 HOH A 29 729 729 HOH HOH . 
N 7 HOH A 30 730 730 HOH HOH . 
N 7 HOH A 31 731 731 HOH HOH . 
N 7 HOH A 32 732 732 HOH HOH . 
N 7 HOH A 33 733 733 HOH HOH . 
N 7 HOH A 34 734 734 HOH HOH . 
N 7 HOH A 35 735 735 HOH HOH . 
N 7 HOH A 36 736 736 HOH HOH . 
N 7 HOH A 37 737 737 HOH HOH . 
N 7 HOH A 38 738 738 HOH HOH . 
N 7 HOH A 39 739 739 HOH HOH . 
N 7 HOH A 40 740 740 HOH HOH . 
N 7 HOH A 41 741 741 HOH HOH . 
N 7 HOH A 42 742 742 HOH HOH . 
N 7 HOH A 43 743 743 HOH HOH . 
N 7 HOH A 44 744 744 HOH HOH . 
N 7 HOH A 45 745 745 HOH HOH . 
N 7 HOH A 46 746 746 HOH HOH . 
N 7 HOH A 47 747 747 HOH HOH . 
N 7 HOH A 48 748 748 HOH HOH . 
N 7 HOH A 49 749 749 HOH HOH . 
N 7 HOH A 50 750 750 HOH HOH . 
N 7 HOH A 51 751 751 HOH HOH . 
N 7 HOH A 52 752 752 HOH HOH . 
N 7 HOH A 53 753 753 HOH HOH . 
N 7 HOH A 54 754 754 HOH HOH . 
N 7 HOH A 55 755 755 HOH HOH . 
N 7 HOH A 56 756 756 HOH HOH . 
N 7 HOH A 57 757 757 HOH HOH . 
N 7 HOH A 58 758 758 HOH HOH . 
N 7 HOH A 59 759 759 HOH HOH . 
N 7 HOH A 60 760 760 HOH HOH . 
N 7 HOH A 61 761 761 HOH HOH . 
N 7 HOH A 62 762 762 HOH HOH . 
N 7 HOH A 63 763 763 HOH HOH . 
N 7 HOH A 64 764 764 HOH HOH . 
N 7 HOH A 65 765 765 HOH HOH . 
N 7 HOH A 66 766 766 HOH HOH . 
N 7 HOH A 67 767 767 HOH HOH . 
N 7 HOH A 68 768 768 HOH HOH . 
N 7 HOH A 69 769 769 HOH HOH . 
N 7 HOH A 70 770 770 HOH HOH . 
N 7 HOH A 71 771 771 HOH HOH . 
N 7 HOH A 72 772 772 HOH HOH . 
N 7 HOH A 73 773 773 HOH HOH . 
N 7 HOH A 74 774 774 HOH HOH . 
N 7 HOH A 75 775 775 HOH HOH . 
N 7 HOH A 76 776 776 HOH HOH . 
N 7 HOH A 77 777 777 HOH HOH . 
N 7 HOH A 78 778 778 HOH HOH . 
N 7 HOH A 79 779 779 HOH HOH . 
N 7 HOH A 80 780 780 HOH HOH . 
N 7 HOH A 81 781 781 HOH HOH . 
N 7 HOH A 82 782 782 HOH HOH . 
N 7 HOH A 83 783 783 HOH HOH . 
N 7 HOH A 84 784 784 HOH HOH . 
N 7 HOH A 85 785 785 HOH HOH . 
N 7 HOH A 86 786 786 HOH HOH . 
N 7 HOH A 87 787 787 HOH HOH . 
N 7 HOH A 88 788 788 HOH HOH . 
N 7 HOH A 89 789 789 HOH HOH . 
N 7 HOH A 90 790 790 HOH HOH . 
N 7 HOH A 91 791 791 HOH HOH . 
N 7 HOH A 92 792 792 HOH HOH . 
N 7 HOH A 93 793 793 HOH HOH . 
N 7 HOH A 94 794 794 HOH HOH . 
N 7 HOH A 95 795 795 HOH HOH . 
N 7 HOH A 96 796 796 HOH HOH . 
N 7 HOH A 97 797 797 HOH HOH . 
N 7 HOH A 98 798 798 HOH HOH . 
N 7 HOH A 99 799 799 HOH HOH . 
N 7 HOH A 100 800 800 HOH HOH . 
N 7 HOH A 101 801 801 HOH HOH . 
N 7 HOH A 102 802 802 HOH HOH . 
N 7 HOH A 103 803 803 HOH HOH . 
N 7 HOH A 104 804 804 HOH HOH . 
N 7 HOH A 105 805 805 HOH HOH . 
N 7 HOH A 106 806 806 HOH HOH . 
N 7 HOH A 107 807 807 HOH HOH . 
N 7 HOH A 108 808 808 HOH HOH . 
N 7 HOH A 109 809 809 HOH HOH . 
N 7 HOH A 110 810 810 HOH HOH . 
N 7 HOH A 111 811 811 HOH HOH . 
N 7 HOH A 112 812 812 HOH HOH . 
N 7 HOH A 113 813 813 HOH HOH . 
N 7 HOH A 114 814 814 HOH HOH . 
N 7 HOH A 115 815 815 HOH HOH . 
N 7 HOH A 116 816 816 HOH HOH . 
N 7 HOH A 117 817 817 HOH HOH . 
N 7 HOH A 118 818 818 HOH HOH . 
N 7 HOH A 119 819 819 HOH HOH . 
N 7 HOH A 120 820 820 HOH HOH . 
N 7 HOH A 121 821 821 HOH HOH . 
N 7 HOH A 122 822 822 HOH HOH . 
N 7 HOH A 123 823 823 HOH HOH . 
N 7 HOH A 124 824 824 HOH HOH . 
N 7 HOH A 125 825 825 HOH HOH . 
N 7 HOH A 126 826 826 HOH HOH . 
N 7 HOH A 127 827 827 HOH HOH . 
N 7 HOH A 128 828 828 HOH HOH . 
N 7 HOH A 129 829 829 HOH HOH . 
N 7 HOH A 130 830 830 HOH HOH . 
N 7 HOH A 131 831 831 HOH HOH . 
N 7 HOH A 132 832 832 HOH HOH . 
N 7 HOH A 133 833 833 HOH HOH . 
N 7 HOH A 134 834 834 HOH HOH . 
N 7 HOH A 135 835 835 HOH HOH . 
N 7 HOH A 136 836 836 HOH HOH . 
N 7 HOH A 137 837 837 HOH HOH . 
N 7 HOH A 138 838 838 HOH HOH . 
N 7 HOH A 139 839 839 HOH HOH . 
N 7 HOH A 140 840 840 HOH HOH . 
N 7 HOH A 141 841 841 HOH HOH . 
N 7 HOH A 142 842 842 HOH HOH . 
N 7 HOH A 143 843 843 HOH HOH . 
N 7 HOH A 144 844 844 HOH HOH . 
N 7 HOH A 145 845 845 HOH HOH . 
N 7 HOH A 146 846 846 HOH HOH . 
N 7 HOH A 147 847 847 HOH HOH . 
N 7 HOH A 148 848 848 HOH HOH . 
N 7 HOH A 149 849 849 HOH HOH . 
N 7 HOH A 150 850 850 HOH HOH . 
N 7 HOH A 151 851 851 HOH HOH . 
N 7 HOH A 152 852 852 HOH HOH . 
N 7 HOH A 153 853 853 HOH HOH . 
N 7 HOH A 154 854 854 HOH HOH . 
N 7 HOH A 155 855 855 HOH HOH . 
N 7 HOH A 156 856 856 HOH HOH . 
N 7 HOH A 157 857 857 HOH HOH . 
N 7 HOH A 158 858 858 HOH HOH . 
N 7 HOH A 159 859 859 HOH HOH . 
N 7 HOH A 160 860 860 HOH HOH . 
N 7 HOH A 161 861 861 HOH HOH . 
N 7 HOH A 162 862 862 HOH HOH . 
N 7 HOH A 163 863 863 HOH HOH . 
N 7 HOH A 164 864 864 HOH HOH . 
N 7 HOH A 165 865 865 HOH HOH . 
N 7 HOH A 166 866 866 HOH HOH . 
N 7 HOH A 167 867 867 HOH HOH . 
N 7 HOH A 168 868 868 HOH HOH . 
N 7 HOH A 169 869 869 HOH HOH . 
N 7 HOH A 170 870 870 HOH HOH . 
N 7 HOH A 171 871 871 HOH HOH . 
N 7 HOH A 172 872 872 HOH HOH . 
N 7 HOH A 173 873 873 HOH HOH . 
N 7 HOH A 174 874 874 HOH HOH . 
N 7 HOH A 175 875 875 HOH HOH . 
N 7 HOH A 176 876 876 HOH HOH . 
N 7 HOH A 177 877 877 HOH HOH . 
N 7 HOH A 178 878 878 HOH HOH . 
N 7 HOH A 179 879 879 HOH HOH . 
N 7 HOH A 180 880 880 HOH HOH . 
N 7 HOH A 181 881 881 HOH HOH . 
N 7 HOH A 182 882 882 HOH HOH . 
N 7 HOH A 183 883 883 HOH HOH . 
N 7 HOH A 184 884 884 HOH HOH . 
N 7 HOH A 185 885 885 HOH HOH . 
N 7 HOH A 186 886 886 HOH HOH . 
N 7 HOH A 187 887 887 HOH HOH . 
N 7 HOH A 188 888 888 HOH HOH . 
N 7 HOH A 189 889 889 HOH HOH . 
N 7 HOH A 190 890 890 HOH HOH . 
N 7 HOH A 191 891 891 HOH HOH . 
N 7 HOH A 192 892 892 HOH HOH . 
N 7 HOH A 193 893 893 HOH HOH . 
N 7 HOH A 194 894 894 HOH HOH . 
N 7 HOH A 195 895 895 HOH HOH . 
N 7 HOH A 196 896 896 HOH HOH . 
N 7 HOH A 197 897 897 HOH HOH . 
N 7 HOH A 198 898 898 HOH HOH . 
N 7 HOH A 199 899 899 HOH HOH . 
N 7 HOH A 200 900 900 HOH HOH . 
N 7 HOH A 201 901 901 HOH HOH . 
N 7 HOH A 202 902 902 HOH HOH . 
N 7 HOH A 203 903 903 HOH HOH . 
N 7 HOH A 204 904 904 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 -9.878 48.205 -19.52 1 77.13 ? C1 GOL 612 A 1 
HETATM 2 O O1 GOL . . . M 6 -10.503 47.023 -19.074 1 66.89 ? O1 GOL 612 A 1 
HETATM 3 C C2 GOL . . . M 6 -10.276 49.367 -18.622 1 86.52 ? C2 GOL 612 A 1 
HETATM 4 O O2 GOL . . . M 6 -11.396 50.018 -19.181 1 91.18 ? O2 GOL 612 A 1 
HETATM 5 C C3 GOL . . . M 6 -9.109 50.342 -18.454 1 89.44 ? C3 GOL 612 A 1 
HETATM 6 O O3 GOL . . . M 6 -8.967 51.165 -19.595 1 90.74 ? O3 GOL 612 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#