data_6BO2 # _model_server_result.job_id KTvxCtLGaU1O7aUahI2RMw _model_server_result.datetime_utc '2024-10-20 03:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6BO2 # _exptl.entry_id 6BO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 101.07 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUTHENIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BO2 _cell.length_a 78.762 _cell.length_b 78.762 _cell.length_c 36.928 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 D RU1 E3D . A E3D 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 D RU1 E3D . A E3D 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A NZ LYS 33 A LYS 33 1_555 E RU1 E3D . A E3D 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc5 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 A O ALA 107 A ALA 107 1_555 C RU RU . A RU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc9 B NA NA . A NA 201 1_555 G O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 B NA NA . A NA 201 1_555 G O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc11 C RU RU . A RU 202 1_555 G O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc12 C RU RU . A RU 202 1_555 G O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc13 C RU RU . A RU 202 1_555 G O HOH . A HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc14 D RU1 E3D . A E3D 203 1_555 G O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc15 E RU1 E3D . A E3D 204 1_555 G O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc16 E RU1 E3D . A E3D 204 1_555 G O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'Ru 3' _chem_comp.formula_weight 101.07 _chem_comp.id RU _chem_comp.mon_nstd_flag . _chem_comp.name 'RUTHENIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BO2 _atom_sites.fract_transf_matrix[1][1] 0.012696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 RU A 1 202 1 RU RU . D 4 E3D A 1 203 1 E3D NCR . E 4 E3D A 1 204 2 E3D NCR . F 5 CL A 1 205 1 CL CL . G 6 HOH A 1 301 67 HOH HOH . G 6 HOH A 2 302 51 HOH HOH . G 6 HOH A 3 303 5 HOH HOH . G 6 HOH A 4 304 47 HOH HOH . G 6 HOH A 5 305 44 HOH HOH . G 6 HOH A 6 306 65 HOH HOH . G 6 HOH A 7 307 52 HOH HOH . G 6 HOH A 8 308 23 HOH HOH . G 6 HOH A 9 309 35 HOH HOH . G 6 HOH A 10 310 14 HOH HOH . G 6 HOH A 11 311 41 HOH HOH . G 6 HOH A 12 312 75 HOH HOH . G 6 HOH A 13 313 17 HOH HOH . G 6 HOH A 14 314 76 HOH HOH . G 6 HOH A 15 315 74 HOH HOH . G 6 HOH A 16 316 28 HOH HOH . G 6 HOH A 17 317 56 HOH HOH . G 6 HOH A 18 318 36 HOH HOH . G 6 HOH A 19 319 6 HOH HOH . G 6 HOH A 20 320 8 HOH HOH . G 6 HOH A 21 321 11 HOH HOH . G 6 HOH A 22 322 62 HOH HOH . G 6 HOH A 23 323 64 HOH HOH . G 6 HOH A 24 324 4 HOH HOH . G 6 HOH A 25 325 18 HOH HOH . G 6 HOH A 26 326 32 HOH HOH . G 6 HOH A 27 327 19 HOH HOH . G 6 HOH A 28 328 34 HOH HOH . G 6 HOH A 29 329 31 HOH HOH . G 6 HOH A 30 330 73 HOH HOH . G 6 HOH A 31 331 7 HOH HOH . G 6 HOH A 32 332 39 HOH HOH . G 6 HOH A 33 333 63 HOH HOH . G 6 HOH A 34 334 71 HOH HOH . G 6 HOH A 35 335 33 HOH HOH . G 6 HOH A 36 336 1 HOH HOH . G 6 HOH A 37 337 25 HOH HOH . G 6 HOH A 38 338 16 HOH HOH . G 6 HOH A 39 339 72 HOH HOH . G 6 HOH A 40 340 10 HOH HOH . G 6 HOH A 41 341 70 HOH HOH . G 6 HOH A 42 342 22 HOH HOH . G 6 HOH A 43 343 29 HOH HOH . G 6 HOH A 44 344 77 HOH HOH . G 6 HOH A 45 345 24 HOH HOH . G 6 HOH A 46 346 42 HOH HOH . G 6 HOH A 47 347 37 HOH HOH . G 6 HOH A 48 348 20 HOH HOH . G 6 HOH A 49 349 45 HOH HOH . G 6 HOH A 50 350 15 HOH HOH . G 6 HOH A 51 351 3 HOH HOH . G 6 HOH A 52 352 53 HOH HOH . G 6 HOH A 53 353 2 HOH HOH . G 6 HOH A 54 354 46 HOH HOH . G 6 HOH A 55 355 49 HOH HOH . G 6 HOH A 56 356 55 HOH HOH . G 6 HOH A 57 357 78 HOH HOH . G 6 HOH A 58 358 9 HOH HOH . G 6 HOH A 59 359 38 HOH HOH . G 6 HOH A 60 360 12 HOH HOH . G 6 HOH A 61 361 21 HOH HOH . G 6 HOH A 62 362 27 HOH HOH . G 6 HOH A 63 363 68 HOH HOH . G 6 HOH A 64 364 30 HOH HOH . G 6 HOH A 65 365 13 HOH HOH . G 6 HOH A 66 366 43 HOH HOH . G 6 HOH A 67 367 59 HOH HOH . G 6 HOH A 68 368 69 HOH HOH . G 6 HOH A 69 369 54 HOH HOH . G 6 HOH A 70 370 60 HOH HOH . G 6 HOH A 71 371 48 HOH HOH . G 6 HOH A 72 372 57 HOH HOH . G 6 HOH A 73 373 79 HOH HOH . G 6 HOH A 74 374 26 HOH HOH . G 6 HOH A 75 375 40 HOH HOH . G 6 HOH A 76 376 61 HOH HOH . G 6 HOH A 77 377 80 HOH HOH . G 6 HOH A 78 378 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RU _atom_site.label_atom_id RU _atom_site.label_comp_id RU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.099 _atom_site.Cartn_y -24.027 _atom_site.Cartn_z 6.35 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 22.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RU _atom_site.auth_comp_id RU _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #