data_6BO6 # _model_server_result.job_id eHOiJNs83dC1MwbLNPkxoA _model_server_result.datetime_utc '2025-02-05 06:59:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bo6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6BO6 # _exptl.entry_id 6BO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-2,7-bis(methylamino)pyrido[3',2':4,5]thieno[3,2-d]pyrimidine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BO6 _cell.length_a 179.443 _cell.length_b 179.443 _cell.length_c 133.778 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -89.7215 -155.402197 0 3 'crystal symmetry operation' 7_554 y,x,-z-2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -89.185333 4 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -89.7215 -155.402197 -89.185333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O6 S' _chem_comp.formula_weight 505.547 _chem_comp.id E0V _chem_comp.mon_nstd_flag . _chem_comp.name "4-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-2,7-bis(methylamino)pyrido[3',2':4,5]thieno[3,2-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C01 E0V sing 83 n n N02 C03 E0V sing 84 n n C04 C03 E0V doub 85 n y C04 C05 E0V sing 86 n y C03 N08 E0V sing 87 n y C05 C06 E0V doub 88 n y N08 C07 E0V doub 89 n y C07 C06 E0V sing 90 n y C07 S09 E0V sing 91 n y C06 C11 E0V sing 92 n y C11 N12 E0V doub 93 n y C11 C10 E0V sing 94 n y N12 C13 E0V sing 95 n y S09 C10 E0V sing 96 n y C15 N14 E0V sing 97 n n C10 C17 E0V doub 98 n y C13 N14 E0V sing 99 n n C13 N16 E0V doub 100 n y C17 N16 E0V sing 101 n y C17 N18 E0V sing 102 n n O34 C33 E0V doub 103 n n O35 C33 E0V sing 104 n n N18 C23 E0V sing 105 n n N18 C19 E0V sing 106 n n C33 C26 E0V sing 107 n n C23 C22 E0V sing 108 n n C22 N21 E0V sing 109 n n O25 C26 E0V sing 110 n n O25 C24 E0V sing 111 n n C19 C20 E0V sing 112 n n C26 C27 E0V sing 113 n n C20 N21 E0V sing 114 n n N21 C24 E0V sing 115 n n C24 C31 E0V sing 116 n n C27 O28 E0V sing 117 n n C27 C29 E0V sing 118 n n C31 C29 E0V sing 119 n n C31 O32 E0V sing 120 n n C29 O30 E0V sing 121 n n C27 H1 E0V sing 122 n n C19 H2 E0V sing 123 n n C19 H3 E0V sing 124 n n C15 H4 E0V sing 125 n n C15 H5 E0V sing 126 n n C15 H6 E0V sing 127 n n C20 H7 E0V sing 128 n n C20 H8 E0V sing 129 n n C24 H9 E0V sing 130 n n C31 H10 E0V sing 131 n n C26 H11 E0V sing 132 n n C23 H12 E0V sing 133 n n C23 H13 E0V sing 134 n n C29 H14 E0V sing 135 n n C01 H15 E0V sing 136 n n C01 H16 E0V sing 137 n n C01 H17 E0V sing 138 n n C04 H18 E0V sing 139 n n C05 H19 E0V sing 140 n n C22 H20 E0V sing 141 n n C22 H21 E0V sing 142 n n N02 H22 E0V sing 143 n n N14 H23 E0V sing 144 n n O28 H25 E0V sing 145 n n O30 H26 E0V sing 146 n n O32 H27 E0V sing 147 n n O35 H28 E0V sing 148 n n # _atom_sites.entry_id 6BO6 _atom_sites.fract_transf_matrix[1][1] 0.005573 _atom_sites.fract_transf_matrix[1][2] 0.003217 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E0V A 1 701 1 E0V 17G . C 3 HOH A 1 801 6 HOH HOH . C 3 HOH A 2 802 4 HOH HOH . C 3 HOH A 3 803 10 HOH HOH . C 3 HOH A 4 804 1 HOH HOH . C 3 HOH A 5 805 17 HOH HOH . C 3 HOH A 6 806 8 HOH HOH . C 3 HOH A 7 807 5 HOH HOH . C 3 HOH A 8 808 2 HOH HOH . C 3 HOH A 9 809 15 HOH HOH . C 3 HOH A 10 810 7 HOH HOH . C 3 HOH A 11 811 13 HOH HOH . C 3 HOH A 12 812 14 HOH HOH . C 3 HOH A 13 813 19 HOH HOH . C 3 HOH A 14 814 3 HOH HOH . C 3 HOH A 15 815 11 HOH HOH . C 3 HOH A 16 816 18 HOH HOH . C 3 HOH A 17 817 9 HOH HOH . C 3 HOH A 18 818 16 HOH HOH . C 3 HOH A 19 819 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 E0V . . . B 2 -58.214 -61.557 -32.857 1 54.65 ? C27 E0V 701 A 1 HETATM 2 C C19 E0V . . . B 2 -62.549 -59.344 -34.184 1 70.81 ? C19 E0V 701 A 1 HETATM 3 C C15 E0V . . . B 2 -67.383 -61.138 -38.075 1 87.27 ? C15 E0V 701 A 1 HETATM 4 C C20 E0V . . . B 2 -61.123 -59.619 -33.674 1 65.04 ? C20 E0V 701 A 1 HETATM 5 C C24 E0V . . . B 2 -58.948 -58.788 -33.093 1 56.21 ? C24 E0V 701 A 1 HETATM 6 C C31 E0V . . . B 2 -59.006 -59.548 -31.741 1 57.19 ? C31 E0V 701 A 1 HETATM 7 C C26 E0V . . . B 2 -57.681 -60.737 -34.044 1 54.9 ? C26 E0V 701 A 1 HETATM 8 C C23 E0V . . . B 2 -61.696 -57.28 -35.184 1 72.46 ? C23 E0V 701 A 1 HETATM 9 C C33 E0V . . . B 2 -57.732 -61.551 -35.303 1 59.49 ? C33 E0V 701 A 1 HETATM 10 C C29 E0V . . . B 2 -58.115 -60.724 -31.636 1 56.32 ? C29 E0V 701 A 1 HETATM 11 C C01 E0V . . . B 2 -63.216 -52.984 -42.334 1 70.57 ? C01 E0V 701 A 1 HETATM 12 C C03 E0V . . . B 2 -64.254 -55.128 -41.619 1 90.61 ? C03 E0V 701 A 1 HETATM 13 C C04 E0V . . . B 2 -65.396 -55.971 -41.701 1 101.9 ? C04 E0V 701 A 1 HETATM 14 C C05 E0V . . . B 2 -65.604 -56.899 -40.712 1 102.73 ? C05 E0V 701 A 1 HETATM 15 C C06 E0V . . . B 2 -64.672 -56.965 -39.668 1 100.79 ? C06 E0V 701 A 1 HETATM 16 C C07 E0V . . . B 2 -63.575 -56.091 -39.67 1 93 ? C07 E0V 701 A 1 HETATM 17 C C10 E0V . . . B 2 -63.657 -57.746 -37.609 1 95.1 ? C10 E0V 701 A 1 HETATM 18 C C11 E0V . . . B 2 -64.716 -57.895 -38.507 1 101.67 ? C11 E0V 701 A 1 HETATM 19 C C13 E0V . . . B 2 -65.602 -59.624 -37.176 1 98.17 ? C13 E0V 701 A 1 HETATM 20 C C17 E0V . . . B 2 -63.629 -58.609 -36.466 1 90.96 ? C17 E0V 701 A 1 HETATM 21 C C22 E0V . . . B 2 -60.27 -57.648 -34.719 1 64.73 ? C22 E0V 701 A 1 HETATM 22 N N02 E0V . . . B 2 -63.993 -54.111 -42.673 1 77.66 ? N02 E0V 701 A 1 HETATM 23 N N08 E0V . . . B 2 -63.402 -55.208 -40.63 1 86.27 ? N08 E0V 701 A 1 HETATM 24 N N12 E0V . . . B 2 -65.669 -58.834 -38.266 1 103.73 ? N12 E0V 701 A 1 HETATM 25 N N14 E0V . . . B 2 -66.627 -60.613 -36.951 1 87.15 ? N14 E0V 701 A 1 HETATM 26 N N16 E0V . . . B 2 -64.602 -59.514 -36.294 1 98.85 ? N16 E0V 701 A 1 HETATM 27 N N18 E0V . . . B 2 -62.521 -58.521 -35.438 1 77.66 ? N18 E0V 701 A 1 HETATM 28 N N21 E0V . . . B 2 -60.345 -58.405 -33.526 1 67.3 ? N21 E0V 701 A 1 HETATM 29 O O25 E0V . . . B 2 -58.511 -59.542 -34.284 1 65.88 ? O25 E0V 701 A 1 HETATM 30 O O28 E0V . . . B 2 -57.486 -62.748 -32.738 1 58.56 ? O28 E0V 701 A 1 HETATM 31 O O30 E0V . . . B 2 -58.484 -61.473 -30.524 1 53.68 ? O30 E0V 701 A 1 HETATM 32 O O32 E0V . . . B 2 -58.734 -58.582 -30.705 1 56.03 ? O32 E0V 701 A 1 HETATM 33 O O34 E0V . . . B 2 -58.786 -61.468 -36.056 1 58.46 ? O34 E0V 701 A 1 HETATM 34 O O35 E0V . . . B 2 -56.745 -62.3 -35.625 1 53.47 ? O35 E0V 701 A 1 HETATM 35 S S09 E0V . . . B 2 -62.685 -56.471 -38.257 1 92.5 ? S09 E0V 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #