data_6BON # _model_server_result.job_id AWEok5O6qyJVYXVXPdpoNQ _model_server_result.datetime_utc '2024-11-05 21:04:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6BON # _exptl.entry_id 6BON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BON _cell.length_a 68.869 _cell.length_b 93.235 _cell.length_c 124.867 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BON _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6BON _atom_sites.fract_transf_matrix[1][1] 0.01452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OAA A 1 501 3 OAA OAA . D 3 COA B 1 501 1 COA COA . E 2 OAA B 1 502 1 OAA OAA . F 2 OAA B 1 503 2 OAA OAA . G 4 HOH A 1 601 96 HOH HOH . G 4 HOH A 2 602 90 HOH HOH . G 4 HOH A 3 603 58 HOH HOH . G 4 HOH A 4 604 59 HOH HOH . G 4 HOH A 5 605 44 HOH HOH . G 4 HOH A 6 606 7 HOH HOH . G 4 HOH A 7 607 33 HOH HOH . G 4 HOH A 8 608 114 HOH HOH . G 4 HOH A 9 609 125 HOH HOH . G 4 HOH A 10 610 21 HOH HOH . G 4 HOH A 11 611 55 HOH HOH . G 4 HOH A 12 612 57 HOH HOH . G 4 HOH A 13 613 103 HOH HOH . G 4 HOH A 14 614 48 HOH HOH . G 4 HOH A 15 615 93 HOH HOH . G 4 HOH A 16 616 23 HOH HOH . G 4 HOH A 17 617 18 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 89 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 24 HOH HOH . G 4 HOH A 22 622 116 HOH HOH . G 4 HOH A 23 623 54 HOH HOH . G 4 HOH A 24 624 11 HOH HOH . G 4 HOH A 25 625 53 HOH HOH . G 4 HOH A 26 626 122 HOH HOH . G 4 HOH A 27 627 117 HOH HOH . G 4 HOH A 28 628 49 HOH HOH . G 4 HOH A 29 629 111 HOH HOH . G 4 HOH A 30 630 50 HOH HOH . G 4 HOH A 31 631 27 HOH HOH . G 4 HOH A 32 632 123 HOH HOH . G 4 HOH A 33 633 98 HOH HOH . G 4 HOH A 34 634 124 HOH HOH . G 4 HOH A 35 635 22 HOH HOH . G 4 HOH A 36 636 35 HOH HOH . G 4 HOH A 37 637 5 HOH HOH . G 4 HOH A 38 638 9 HOH HOH . G 4 HOH A 39 639 29 HOH HOH . G 4 HOH A 40 640 25 HOH HOH . G 4 HOH A 41 641 12 HOH HOH . G 4 HOH A 42 642 110 HOH HOH . G 4 HOH A 43 643 39 HOH HOH . G 4 HOH A 44 644 95 HOH HOH . G 4 HOH A 45 645 94 HOH HOH . G 4 HOH A 46 646 47 HOH HOH . G 4 HOH A 47 647 2 HOH HOH . G 4 HOH A 48 648 26 HOH HOH . G 4 HOH A 49 649 36 HOH HOH . G 4 HOH A 50 650 10 HOH HOH . G 4 HOH A 51 651 4 HOH HOH . G 4 HOH A 52 652 118 HOH HOH . G 4 HOH A 53 653 56 HOH HOH . G 4 HOH A 54 654 32 HOH HOH . G 4 HOH A 55 655 102 HOH HOH . G 4 HOH A 56 656 100 HOH HOH . G 4 HOH A 57 657 28 HOH HOH . G 4 HOH A 58 658 115 HOH HOH . G 4 HOH A 59 659 88 HOH HOH . G 4 HOH A 60 660 46 HOH HOH . G 4 HOH A 61 661 19 HOH HOH . G 4 HOH A 62 662 31 HOH HOH . G 4 HOH A 63 663 45 HOH HOH . G 4 HOH A 64 664 97 HOH HOH . G 4 HOH A 65 665 147 HOH HOH . G 4 HOH A 66 666 3 HOH HOH . G 4 HOH A 67 667 99 HOH HOH . G 4 HOH A 68 668 37 HOH HOH . G 4 HOH A 69 669 121 HOH HOH . G 4 HOH A 70 670 148 HOH HOH . G 4 HOH A 71 671 104 HOH HOH . G 4 HOH A 72 672 51 HOH HOH . G 4 HOH A 73 673 92 HOH HOH . G 4 HOH A 74 674 126 HOH HOH . G 4 HOH A 75 675 120 HOH HOH . G 4 HOH A 76 676 101 HOH HOH . H 4 HOH B 1 601 136 HOH HOH . H 4 HOH B 2 602 133 HOH HOH . H 4 HOH B 3 603 62 HOH HOH . H 4 HOH B 4 604 109 HOH HOH . H 4 HOH B 5 605 66 HOH HOH . H 4 HOH B 6 606 85 HOH HOH . H 4 HOH B 7 607 106 HOH HOH . H 4 HOH B 8 608 138 HOH HOH . H 4 HOH B 9 609 112 HOH HOH . H 4 HOH B 10 610 42 HOH HOH . H 4 HOH B 11 611 74 HOH HOH . H 4 HOH B 12 612 60 HOH HOH . H 4 HOH B 13 613 61 HOH HOH . H 4 HOH B 14 614 20 HOH HOH . H 4 HOH B 15 615 67 HOH HOH . H 4 HOH B 16 616 63 HOH HOH . H 4 HOH B 17 617 127 HOH HOH . H 4 HOH B 18 618 142 HOH HOH . H 4 HOH B 19 619 81 HOH HOH . H 4 HOH B 20 620 141 HOH HOH . H 4 HOH B 21 621 75 HOH HOH . H 4 HOH B 22 622 91 HOH HOH . H 4 HOH B 23 623 135 HOH HOH . H 4 HOH B 24 624 40 HOH HOH . H 4 HOH B 25 625 137 HOH HOH . H 4 HOH B 26 626 76 HOH HOH . H 4 HOH B 27 627 16 HOH HOH . H 4 HOH B 28 628 79 HOH HOH . H 4 HOH B 29 629 41 HOH HOH . H 4 HOH B 30 630 83 HOH HOH . H 4 HOH B 31 631 13 HOH HOH . H 4 HOH B 32 632 64 HOH HOH . H 4 HOH B 33 633 78 HOH HOH . H 4 HOH B 34 634 65 HOH HOH . H 4 HOH B 35 635 14 HOH HOH . H 4 HOH B 36 636 139 HOH HOH . H 4 HOH B 37 637 107 HOH HOH . H 4 HOH B 38 638 143 HOH HOH . H 4 HOH B 39 639 87 HOH HOH . H 4 HOH B 40 640 129 HOH HOH . H 4 HOH B 41 641 80 HOH HOH . H 4 HOH B 42 642 69 HOH HOH . H 4 HOH B 43 643 15 HOH HOH . H 4 HOH B 44 644 149 HOH HOH . H 4 HOH B 45 645 73 HOH HOH . H 4 HOH B 46 646 17 HOH HOH . H 4 HOH B 47 647 140 HOH HOH . H 4 HOH B 48 648 128 HOH HOH . H 4 HOH B 49 649 131 HOH HOH . H 4 HOH B 50 650 132 HOH HOH . H 4 HOH B 51 651 82 HOH HOH . H 4 HOH B 52 652 108 HOH HOH . H 4 HOH B 53 653 77 HOH HOH . H 4 HOH B 54 654 72 HOH HOH . H 4 HOH B 55 655 130 HOH HOH . H 4 HOH B 56 656 6 HOH HOH . H 4 HOH B 57 657 52 HOH HOH . H 4 HOH B 58 658 71 HOH HOH . H 4 HOH B 59 659 145 HOH HOH . H 4 HOH B 60 660 144 HOH HOH . H 4 HOH B 61 661 70 HOH HOH . H 4 HOH B 62 662 134 HOH HOH . H 4 HOH B 63 663 86 HOH HOH . H 4 HOH B 64 664 38 HOH HOH . H 4 HOH B 65 665 119 HOH HOH . H 4 HOH B 66 666 105 HOH HOH . H 4 HOH B 67 667 146 HOH HOH . H 4 HOH B 68 668 84 HOH HOH . H 4 HOH B 69 669 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 9.487 -11.823 31.699 1 39.59 ? N1A COA 501 B 1 HETATM 2 C C2A COA . . . D 3 9.786 -11.939 30.395 1 39.41 ? C2A COA 501 B 1 HETATM 3 N N3A COA . . . D 3 9.187 -11.233 29.425 1 39.52 ? N3A COA 501 B 1 HETATM 4 C C4A COA . . . D 3 8.231 -10.333 29.724 1 40.36 ? C4A COA 501 B 1 HETATM 5 C C5A COA . . . D 3 7.848 -10.141 31.125 1 40.03 ? C5A COA 501 B 1 HETATM 6 C C6A COA . . . D 3 8.553 -10.96 32.126 1 39.33 ? C6A COA 501 B 1 HETATM 7 N N6A COA . . . D 3 8.264 -10.848 33.429 1 42.17 ? N6A COA 501 B 1 HETATM 8 N N7A COA . . . D 3 6.905 -9.194 31.14 1 40.03 ? N7A COA 501 B 1 HETATM 9 C C8A COA . . . D 3 6.692 -8.829 29.856 1 39.92 ? C8A COA 501 B 1 HETATM 10 N N9A COA . . . D 3 7.486 -9.506 29.019 1 40.38 ? N9A COA 501 B 1 HETATM 11 C C1B COA . . . D 3 7.523 -9.382 27.555 1 42.74 ? C1B COA 501 B 1 HETATM 12 C C2B COA . . . D 3 6.217 -9.855 26.93 1 43.95 ? C2B COA 501 B 1 HETATM 13 O O2B COA . . . D 3 6.098 -11.267 26.801 1 47.47 ? O2B COA 501 B 1 HETATM 14 C C3B COA . . . D 3 6.274 -9.158 25.602 1 43.64 ? C3B COA 501 B 1 HETATM 15 O O3B COA . . . D 3 7.148 -9.916 24.789 1 45.56 ? O3B COA 501 B 1 HETATM 16 P P3B COA . . . D 3 6.758 -10.511 23.372 1 46.14 ? P3B COA 501 B 1 HETATM 17 O O7A COA . . . D 3 8.105 -10.902 22.826 1 45.01 ? O7A COA 501 B 1 HETATM 18 O O8A COA . . . D 3 5.837 -11.656 23.7 1 48.06 ? O8A COA 501 B 1 HETATM 19 O O9A COA . . . D 3 6.095 -9.359 22.674 1 45.13 ? O9A COA 501 B 1 HETATM 20 C C4B COA . . . D 3 6.903 -7.809 25.935 1 43.5 ? C4B COA 501 B 1 HETATM 21 O O4B COA . . . D 3 7.641 -8.024 27.141 1 45.01 ? O4B COA 501 B 1 HETATM 22 C C5B COA . . . D 3 5.894 -6.687 26.157 1 41.36 ? C5B COA 501 B 1 HETATM 23 O O5B COA . . . D 3 4.949 -7.068 27.149 1 41.06 ? O5B COA 501 B 1 HETATM 24 P P1A COA . . . D 3 4.303 -6.143 28.295 1 40.64 ? P1A COA 501 B 1 HETATM 25 O O1A COA . . . D 3 3.43 -5.093 27.678 1 41.57 ? O1A COA 501 B 1 HETATM 26 O O2A COA . . . D 3 5.322 -5.698 29.294 1 41.87 ? O2A COA 501 B 1 HETATM 27 O O3A COA . . . D 3 3.448 -7.256 29.068 1 39.77 ? O3A COA 501 B 1 HETATM 28 P P2A COA . . . D 3 1.859 -7.485 29.069 1 42.03 ? P2A COA 501 B 1 HETATM 29 O O4A COA . . . D 3 1.192 -6.335 29.748 1 46.22 ? O4A COA 501 B 1 HETATM 30 O O5A COA . . . D 3 1.366 -7.931 27.732 1 38.38 ? O5A COA 501 B 1 HETATM 31 O O6A COA . . . D 3 1.755 -8.742 30.035 1 42.45 ? O6A COA 501 B 1 HETATM 32 C CBP COA . . . D 3 2.376 -9.987 31.976 1 41.02 ? CBP COA 501 B 1 HETATM 33 C CCP COA . . . D 3 1.95 -8.632 31.436 1 42.01 ? CCP COA 501 B 1 HETATM 34 C CDP COA . . . D 3 2.125 -9.997 33.458 1 39.3 ? CDP COA 501 B 1 HETATM 35 C CEP COA . . . D 3 1.536 -11.072 31.303 1 38.2 ? CEP COA 501 B 1 HETATM 36 C CAP COA . . . D 3 3.877 -10.155 31.73 1 41.59 ? CAP COA 501 B 1 HETATM 37 O OAP COA . . . D 3 4.624 -9.246 32.559 1 41.25 ? OAP COA 501 B 1 HETATM 38 C C9P COA . . . D 3 4.449 -11.565 31.815 1 40.54 ? C9P COA 501 B 1 HETATM 39 O O9P COA . . . D 3 3.948 -12.455 31.156 1 44.09 ? O9P COA 501 B 1 HETATM 40 N N8P COA . . . D 3 5.329 -11.928 32.726 1 43.14 ? N8P COA 501 B 1 HETATM 41 C C7P COA . . . D 3 4.932 -12.06 34.117 1 43.72 ? C7P COA 501 B 1 HETATM 42 C C6P COA . . . D 3 4.453 -13.469 34.451 1 41.69 ? C6P COA 501 B 1 HETATM 43 C C5P COA . . . D 3 3.669 -13.316 35.719 1 41.71 ? C5P COA 501 B 1 HETATM 44 O O5P COA . . . D 3 4.273 -13.072 36.746 1 39.1 ? O5P COA 501 B 1 HETATM 45 N N4P COA . . . D 3 2.35 -13.308 35.626 1 43.14 ? N4P COA 501 B 1 HETATM 46 C C3P COA . . . D 3 1.527 -12.72 36.666 1 48.63 ? C3P COA 501 B 1 HETATM 47 C C2P COA . . . D 3 1.434 -11.22 36.428 1 52.85 ? C2P COA 501 B 1 HETATM 48 S S1P COA . . . D 3 0.63 -10.461 37.841 1 60.76 ? S1P COA 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #