data_6BON # _model_server_result.job_id w7PI-ZM6eLhybSLLrZL7yQ _model_server_result.datetime_utc '2024-11-05 21:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 6BON # _exptl.entry_id 6BON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.064 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXALOACETATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BON _cell.length_a 68.869 _cell.length_b 93.235 _cell.length_c 124.867 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BON _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C4 H3 O5 -1' _chem_comp.formula_weight 131.064 _chem_comp.id OAA _chem_comp.mon_nstd_flag . _chem_comp.name 'OXALOACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 OAA doub 323 n n O2 C1 OAA sing 324 n n O4 C4 OAA doub 325 n n O5 C4 OAA sing 326 n n O5 HO5 OAA sing 327 n n O3 C3 OAA doub 328 n n C1 C2 OAA sing 329 n n C2 C3 OAA sing 330 n n C2 H21 OAA sing 331 n n C2 H22 OAA sing 332 n n C3 C4 OAA sing 333 n n # _atom_sites.entry_id 6BON _atom_sites.fract_transf_matrix[1][1] 0.01452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OAA A 1 501 3 OAA OAA . D 3 COA B 1 501 1 COA COA . E 2 OAA B 1 502 1 OAA OAA . F 2 OAA B 1 503 2 OAA OAA . G 4 HOH A 1 601 96 HOH HOH . G 4 HOH A 2 602 90 HOH HOH . G 4 HOH A 3 603 58 HOH HOH . G 4 HOH A 4 604 59 HOH HOH . G 4 HOH A 5 605 44 HOH HOH . G 4 HOH A 6 606 7 HOH HOH . G 4 HOH A 7 607 33 HOH HOH . G 4 HOH A 8 608 114 HOH HOH . G 4 HOH A 9 609 125 HOH HOH . G 4 HOH A 10 610 21 HOH HOH . G 4 HOH A 11 611 55 HOH HOH . G 4 HOH A 12 612 57 HOH HOH . G 4 HOH A 13 613 103 HOH HOH . G 4 HOH A 14 614 48 HOH HOH . G 4 HOH A 15 615 93 HOH HOH . G 4 HOH A 16 616 23 HOH HOH . G 4 HOH A 17 617 18 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 89 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 24 HOH HOH . G 4 HOH A 22 622 116 HOH HOH . G 4 HOH A 23 623 54 HOH HOH . G 4 HOH A 24 624 11 HOH HOH . G 4 HOH A 25 625 53 HOH HOH . G 4 HOH A 26 626 122 HOH HOH . G 4 HOH A 27 627 117 HOH HOH . G 4 HOH A 28 628 49 HOH HOH . G 4 HOH A 29 629 111 HOH HOH . G 4 HOH A 30 630 50 HOH HOH . G 4 HOH A 31 631 27 HOH HOH . G 4 HOH A 32 632 123 HOH HOH . G 4 HOH A 33 633 98 HOH HOH . G 4 HOH A 34 634 124 HOH HOH . G 4 HOH A 35 635 22 HOH HOH . G 4 HOH A 36 636 35 HOH HOH . G 4 HOH A 37 637 5 HOH HOH . G 4 HOH A 38 638 9 HOH HOH . G 4 HOH A 39 639 29 HOH HOH . G 4 HOH A 40 640 25 HOH HOH . G 4 HOH A 41 641 12 HOH HOH . G 4 HOH A 42 642 110 HOH HOH . G 4 HOH A 43 643 39 HOH HOH . G 4 HOH A 44 644 95 HOH HOH . G 4 HOH A 45 645 94 HOH HOH . G 4 HOH A 46 646 47 HOH HOH . G 4 HOH A 47 647 2 HOH HOH . G 4 HOH A 48 648 26 HOH HOH . G 4 HOH A 49 649 36 HOH HOH . G 4 HOH A 50 650 10 HOH HOH . G 4 HOH A 51 651 4 HOH HOH . G 4 HOH A 52 652 118 HOH HOH . G 4 HOH A 53 653 56 HOH HOH . G 4 HOH A 54 654 32 HOH HOH . G 4 HOH A 55 655 102 HOH HOH . G 4 HOH A 56 656 100 HOH HOH . G 4 HOH A 57 657 28 HOH HOH . G 4 HOH A 58 658 115 HOH HOH . G 4 HOH A 59 659 88 HOH HOH . G 4 HOH A 60 660 46 HOH HOH . G 4 HOH A 61 661 19 HOH HOH . G 4 HOH A 62 662 31 HOH HOH . G 4 HOH A 63 663 45 HOH HOH . G 4 HOH A 64 664 97 HOH HOH . G 4 HOH A 65 665 147 HOH HOH . G 4 HOH A 66 666 3 HOH HOH . G 4 HOH A 67 667 99 HOH HOH . G 4 HOH A 68 668 37 HOH HOH . G 4 HOH A 69 669 121 HOH HOH . G 4 HOH A 70 670 148 HOH HOH . G 4 HOH A 71 671 104 HOH HOH . G 4 HOH A 72 672 51 HOH HOH . G 4 HOH A 73 673 92 HOH HOH . G 4 HOH A 74 674 126 HOH HOH . G 4 HOH A 75 675 120 HOH HOH . G 4 HOH A 76 676 101 HOH HOH . H 4 HOH B 1 601 136 HOH HOH . H 4 HOH B 2 602 133 HOH HOH . H 4 HOH B 3 603 62 HOH HOH . H 4 HOH B 4 604 109 HOH HOH . H 4 HOH B 5 605 66 HOH HOH . H 4 HOH B 6 606 85 HOH HOH . H 4 HOH B 7 607 106 HOH HOH . H 4 HOH B 8 608 138 HOH HOH . H 4 HOH B 9 609 112 HOH HOH . H 4 HOH B 10 610 42 HOH HOH . H 4 HOH B 11 611 74 HOH HOH . H 4 HOH B 12 612 60 HOH HOH . H 4 HOH B 13 613 61 HOH HOH . H 4 HOH B 14 614 20 HOH HOH . H 4 HOH B 15 615 67 HOH HOH . H 4 HOH B 16 616 63 HOH HOH . H 4 HOH B 17 617 127 HOH HOH . H 4 HOH B 18 618 142 HOH HOH . H 4 HOH B 19 619 81 HOH HOH . H 4 HOH B 20 620 141 HOH HOH . H 4 HOH B 21 621 75 HOH HOH . H 4 HOH B 22 622 91 HOH HOH . H 4 HOH B 23 623 135 HOH HOH . H 4 HOH B 24 624 40 HOH HOH . H 4 HOH B 25 625 137 HOH HOH . H 4 HOH B 26 626 76 HOH HOH . H 4 HOH B 27 627 16 HOH HOH . H 4 HOH B 28 628 79 HOH HOH . H 4 HOH B 29 629 41 HOH HOH . H 4 HOH B 30 630 83 HOH HOH . H 4 HOH B 31 631 13 HOH HOH . H 4 HOH B 32 632 64 HOH HOH . H 4 HOH B 33 633 78 HOH HOH . H 4 HOH B 34 634 65 HOH HOH . H 4 HOH B 35 635 14 HOH HOH . H 4 HOH B 36 636 139 HOH HOH . H 4 HOH B 37 637 107 HOH HOH . H 4 HOH B 38 638 143 HOH HOH . H 4 HOH B 39 639 87 HOH HOH . H 4 HOH B 40 640 129 HOH HOH . H 4 HOH B 41 641 80 HOH HOH . H 4 HOH B 42 642 69 HOH HOH . H 4 HOH B 43 643 15 HOH HOH . H 4 HOH B 44 644 149 HOH HOH . H 4 HOH B 45 645 73 HOH HOH . H 4 HOH B 46 646 17 HOH HOH . H 4 HOH B 47 647 140 HOH HOH . H 4 HOH B 48 648 128 HOH HOH . H 4 HOH B 49 649 131 HOH HOH . H 4 HOH B 50 650 132 HOH HOH . H 4 HOH B 51 651 82 HOH HOH . H 4 HOH B 52 652 108 HOH HOH . H 4 HOH B 53 653 77 HOH HOH . H 4 HOH B 54 654 72 HOH HOH . H 4 HOH B 55 655 130 HOH HOH . H 4 HOH B 56 656 6 HOH HOH . H 4 HOH B 57 657 52 HOH HOH . H 4 HOH B 58 658 71 HOH HOH . H 4 HOH B 59 659 145 HOH HOH . H 4 HOH B 60 660 144 HOH HOH . H 4 HOH B 61 661 70 HOH HOH . H 4 HOH B 62 662 134 HOH HOH . H 4 HOH B 63 663 86 HOH HOH . H 4 HOH B 64 664 38 HOH HOH . H 4 HOH B 65 665 119 HOH HOH . H 4 HOH B 66 666 105 HOH HOH . H 4 HOH B 67 667 146 HOH HOH . H 4 HOH B 68 668 84 HOH HOH . H 4 HOH B 69 669 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OAA . . . F 2 -5.19 -10.286 38.978 0.5 43.78 ? O1 OAA 503 B 1 HETATM 2 O O2 OAA . . . F 2 -4.249 -9.212 40.601 0.5 42.07 ? O2 OAA 503 B 1 HETATM 3 O O4 OAA . . . F 2 -1.792 -12.114 37.296 0.5 36.47 ? O4 OAA 503 B 1 HETATM 4 O O5 OAA . . . F 2 -1.654 -13.263 39.166 0.5 36.56 ? O5 OAA 503 B 1 HETATM 5 O O3 OAA . . . F 2 -1.498 -10.86 40.433 0.5 40.28 ? O3 OAA 503 B 1 HETATM 6 C C1 OAA . . . F 2 -4.182 -9.783 39.496 0.5 43.06 ? C1 OAA 503 B 1 HETATM 7 C C2 OAA . . . F 2 -2.857 -9.85 38.771 0.5 41.34 ? C2 OAA 503 B 1 HETATM 8 C C3 OAA . . . F 2 -2.022 -10.971 39.336 0.5 40.7 ? C3 OAA 503 B 1 HETATM 9 C C4 OAA . . . F 2 -1.819 -12.187 38.553 0.5 39.04 ? C4 OAA 503 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #