data_6BP1 # _model_server_result.job_id xeYuOJaH9oRjzdTORw1CCg _model_server_result.datetime_utc '2024-10-18 17:29:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6BP1 # _exptl.entry_id 6BP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BP1 _cell.length_a 34.391 _cell.length_b 47.473 _cell.length_c 89.665 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GCP doub 83 n n PG O2G GCP sing 84 n n PG O3G GCP sing 85 n n PG C3B GCP sing 86 n n O2G HOG2 GCP sing 87 n n O3G HOG3 GCP sing 88 n n C3B PB GCP sing 89 n n C3B H3B1 GCP sing 90 n n C3B H3B2 GCP sing 91 n n PB O1B GCP doub 92 n n PB O2B GCP sing 93 n n PB O3A GCP sing 94 n n O2B HOB2 GCP sing 95 n n O3A PA GCP sing 96 n n PA O1A GCP doub 97 n n PA O2A GCP sing 98 n n PA O5' GCP sing 99 n n O2A HOA2 GCP sing 100 n n O5' C5' GCP sing 101 n n C5' C4' GCP sing 102 n n C5' "H5'2" GCP sing 103 n n C5' "H5'1" GCP sing 104 n n C4' O4' GCP sing 105 n n C4' C3' GCP sing 106 n n C4' H4' GCP sing 107 n n O4' C1' GCP sing 108 n n C3' O3' GCP sing 109 n n C3' C2' GCP sing 110 n n C3' H3' GCP sing 111 n n O3' HO3' GCP sing 112 n n C2' O2' GCP sing 113 n n C2' C1' GCP sing 114 n n C2' H2' GCP sing 115 n n O2' HO2' GCP sing 116 n n C1' N9 GCP sing 117 n n C1' H1' GCP sing 118 n n N9 C8 GCP sing 119 n y N9 C4 GCP sing 120 n y C8 N7 GCP doub 121 n y C8 H8 GCP sing 122 n n N7 C5 GCP sing 123 n y C5 C6 GCP sing 124 n y C5 C4 GCP doub 125 n y C6 O6 GCP doub 126 n n C6 N1 GCP sing 127 n y N1 C2 GCP sing 128 n y N1 HN1 GCP sing 129 n n C2 N2 GCP sing 130 n n C2 N3 GCP doub 131 n y N2 HN21 GCP sing 132 n n N2 HN22 GCP sing 133 n n N3 C4 GCP sing 134 n y # _atom_sites.entry_id 6BP1 _atom_sites.fract_transf_matrix[1][1] 0.029077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCP A 1 201 1 GCP GCP . C 3 HOH A 1 301 88 HOH HOH . C 3 HOH A 2 302 65 HOH HOH . C 3 HOH A 3 303 1 HOH HOH . C 3 HOH A 4 304 53 HOH HOH . C 3 HOH A 5 305 20 HOH HOH . C 3 HOH A 6 306 79 HOH HOH . C 3 HOH A 7 307 71 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 44 HOH HOH . C 3 HOH A 10 310 66 HOH HOH . C 3 HOH A 11 311 54 HOH HOH . C 3 HOH A 12 312 22 HOH HOH . C 3 HOH A 13 313 7 HOH HOH . C 3 HOH A 14 314 39 HOH HOH . C 3 HOH A 15 315 69 HOH HOH . C 3 HOH A 16 316 21 HOH HOH . C 3 HOH A 17 317 57 HOH HOH . C 3 HOH A 18 318 6 HOH HOH . C 3 HOH A 19 319 75 HOH HOH . C 3 HOH A 20 320 27 HOH HOH . C 3 HOH A 21 321 68 HOH HOH . C 3 HOH A 22 322 9 HOH HOH . C 3 HOH A 23 323 30 HOH HOH . C 3 HOH A 24 324 35 HOH HOH . C 3 HOH A 25 325 80 HOH HOH . C 3 HOH A 26 326 40 HOH HOH . C 3 HOH A 27 327 74 HOH HOH . C 3 HOH A 28 328 70 HOH HOH . C 3 HOH A 29 329 23 HOH HOH . C 3 HOH A 30 330 52 HOH HOH . C 3 HOH A 31 331 47 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 89 HOH HOH . C 3 HOH A 34 334 36 HOH HOH . C 3 HOH A 35 335 2 HOH HOH . C 3 HOH A 36 336 41 HOH HOH . C 3 HOH A 37 337 58 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 31 HOH HOH . C 3 HOH A 40 340 32 HOH HOH . C 3 HOH A 41 341 55 HOH HOH . C 3 HOH A 42 342 67 HOH HOH . C 3 HOH A 43 343 4 HOH HOH . C 3 HOH A 44 344 15 HOH HOH . C 3 HOH A 45 345 46 HOH HOH . C 3 HOH A 46 346 28 HOH HOH . C 3 HOH A 47 347 3 HOH HOH . C 3 HOH A 48 348 61 HOH HOH . C 3 HOH A 49 349 37 HOH HOH . C 3 HOH A 50 350 48 HOH HOH . C 3 HOH A 51 351 81 HOH HOH . C 3 HOH A 52 352 78 HOH HOH . C 3 HOH A 53 353 49 HOH HOH . C 3 HOH A 54 354 64 HOH HOH . C 3 HOH A 55 355 45 HOH HOH . C 3 HOH A 56 356 50 HOH HOH . C 3 HOH A 57 357 56 HOH HOH . C 3 HOH A 58 358 90 HOH HOH . C 3 HOH A 59 359 11 HOH HOH . C 3 HOH A 60 360 12 HOH HOH . C 3 HOH A 61 361 73 HOH HOH . C 3 HOH A 62 362 25 HOH HOH . C 3 HOH A 63 363 16 HOH HOH . C 3 HOH A 64 364 29 HOH HOH . C 3 HOH A 65 365 34 HOH HOH . C 3 HOH A 66 366 33 HOH HOH . C 3 HOH A 67 367 60 HOH HOH . C 3 HOH A 68 368 18 HOH HOH . C 3 HOH A 69 369 72 HOH HOH . C 3 HOH A 70 370 5 HOH HOH . C 3 HOH A 71 371 82 HOH HOH . C 3 HOH A 72 372 42 HOH HOH . C 3 HOH A 73 373 43 HOH HOH . C 3 HOH A 74 374 14 HOH HOH . C 3 HOH A 75 375 19 HOH HOH . C 3 HOH A 76 376 63 HOH HOH . C 3 HOH A 77 377 92 HOH HOH . C 3 HOH A 78 378 13 HOH HOH . C 3 HOH A 79 379 10 HOH HOH . C 3 HOH A 80 380 26 HOH HOH . C 3 HOH A 81 381 8 HOH HOH . C 3 HOH A 82 382 84 HOH HOH . C 3 HOH A 83 383 77 HOH HOH . C 3 HOH A 84 384 59 HOH HOH . C 3 HOH A 85 385 83 HOH HOH . C 3 HOH A 86 386 76 HOH HOH . C 3 HOH A 87 387 86 HOH HOH . C 3 HOH A 88 388 91 HOH HOH . C 3 HOH A 89 389 51 HOH HOH . C 3 HOH A 90 390 62 HOH HOH . C 3 HOH A 91 391 87 HOH HOH . C 3 HOH A 92 392 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . B 2 5.898 -13.583 -11.599 1 37.44 ? PG GCP 201 A 1 HETATM 2 O O1G GCP . . . B 2 6.432 -14.673 -10.725 1 33.11 ? O1G GCP 201 A 1 HETATM 3 O O2G GCP . . . B 2 5.614 -12.293 -10.797 1 38.99 ? O2G GCP 201 A 1 HETATM 4 O O3G GCP . . . B 2 4.593 -13.998 -12.318 1 39.5 ? O3G GCP 201 A 1 HETATM 5 C C3B GCP . . . B 2 7.052 -13.099 -12.89 1 30.93 ? C3B GCP 201 A 1 HETATM 6 P PB GCP . . . B 2 6.479 -13.161 -14.591 1 26.31 ? PB GCP 201 A 1 HETATM 7 O O1B GCP . . . B 2 5.263 -13.955 -15.006 1 25.88 ? O1B GCP 201 A 1 HETATM 8 O O2B GCP . . . B 2 6.281 -11.686 -15.044 1 23.04 ? O2B GCP 201 A 1 HETATM 9 O O3A GCP . . . B 2 7.807 -13.659 -15.359 1 24.66 ? O3A GCP 201 A 1 HETATM 10 P PA GCP . . . B 2 8.881 -14.799 -15.079 1 23.65 ? PA GCP 201 A 1 HETATM 11 O O1A GCP . . . B 2 10.014 -14.274 -14.29 1 24.45 ? O1A GCP 201 A 1 HETATM 12 O O2A GCP . . . B 2 8.139 -15.953 -14.427 1 23.94 ? O2A GCP 201 A 1 HETATM 13 O O5' GCP . . . B 2 9.375 -15.313 -16.538 1 27 ? O5' GCP 201 A 1 HETATM 14 C C5' GCP . . . B 2 8.448 -15.873 -17.494 1 28.3 ? C5' GCP 201 A 1 HETATM 15 C C4' GCP . . . B 2 9.225 -16.597 -18.564 1 29.93 ? C4' GCP 201 A 1 HETATM 16 O O4' GCP . . . B 2 9.994 -15.644 -19.333 1 28.81 ? O4' GCP 201 A 1 HETATM 17 C C3' GCP . . . B 2 10.219 -17.644 -18.063 1 31.16 ? C3' GCP 201 A 1 HETATM 18 O O3' GCP . . . B 2 10.264 -18.768 -18.934 1 33.77 ? O3' GCP 201 A 1 HETATM 19 C C2' GCP . . . B 2 11.544 -16.881 -18.068 1 28.87 ? C2' GCP 201 A 1 HETATM 20 O O2' GCP . . . B 2 12.655 -17.75 -18.254 1 29.55 ? O2' GCP 201 A 1 HETATM 21 C C1' GCP . . . B 2 11.365 -15.991 -19.296 1 27.94 ? C1' GCP 201 A 1 HETATM 22 N N9 GCP . . . B 2 12.154 -14.752 -19.244 1 25.21 ? N9 GCP 201 A 1 HETATM 23 C C8 GCP . . . B 2 12.168 -13.817 -18.242 1 23.39 ? C8 GCP 201 A 1 HETATM 24 N N7 GCP . . . B 2 12.964 -12.803 -18.49 1 22.43 ? N7 GCP 201 A 1 HETATM 25 C C5 GCP . . . B 2 13.506 -13.089 -19.732 1 23.35 ? C5 GCP 201 A 1 HETATM 26 C C6 GCP . . . B 2 14.435 -12.365 -20.538 1 24.25 ? C6 GCP 201 A 1 HETATM 27 O O6 GCP . . . B 2 14.957 -11.281 -20.281 1 21.75 ? O6 GCP 201 A 1 HETATM 28 N N1 GCP . . . B 2 14.714 -13.018 -21.724 1 27.15 ? N1 GCP 201 A 1 HETATM 29 C C2 GCP . . . B 2 14.176 -14.218 -22.108 1 28.71 ? C2 GCP 201 A 1 HETATM 30 N N2 GCP . . . B 2 14.557 -14.696 -23.291 1 31.01 ? N2 GCP 201 A 1 HETATM 31 N N3 GCP . . . B 2 13.309 -14.904 -21.369 1 27.47 ? N3 GCP 201 A 1 HETATM 32 C C4 GCP . . . B 2 13.019 -14.289 -20.207 1 25.44 ? C4 GCP 201 A 1 HETATM 33 H HOG2 GCP . . . B 2 5.312 -12.318 -9.851 1 46.81 ? HOG2 GCP 201 A 1 HETATM 34 H HOG3 GCP . . . B 2 4.091 -13.532 -13.036 1 47.41 ? HOG3 GCP 201 A 1 HETATM 35 H H3B1 GCP . . . B 2 7.435 -12.098 -12.694 1 37.14 ? H3B1 GCP 201 A 1 HETATM 36 H H3B2 GCP . . . B 2 7.966 -13.687 -12.814 1 37.14 ? H3B2 GCP 201 A 1 HETATM 37 H HOB2 GCP . . . B 2 5.963 -11.265 -15.885 1 27.66 ? HOB2 GCP 201 A 1 HETATM 38 H HOA2 GCP . . . B 2 8.499 -16.753 -13.961 1 28.74 ? HOA2 GCP 201 A 1 HETATM 39 H "H5'2" GCP . . . B 2 7.768 -16.56 -16.992 1 33.98 ? "H5'2" GCP 201 A 1 HETATM 40 H "H5'1" GCP . . . B 2 7.847 -15.08 -17.935 1 33.98 ? "H5'1" GCP 201 A 1 HETATM 41 H H4' GCP . . . B 2 8.552 -17.033 -19.301 1 35.94 ? H4' GCP 201 A 1 HETATM 42 H H3' GCP . . . B 2 9.971 -17.999 -17.064 1 37.41 ? H3' GCP 201 A 1 HETATM 43 H HO3' GCP . . . B 2 11.141 -19.218 -18.817 1 40.54 ? HO3' GCP 201 A 1 HETATM 44 H H2' GCP . . . B 2 11.659 -16.292 -17.159 1 34.66 ? H2' GCP 201 A 1 HETATM 45 H HO2' GCP . . . B 2 12.768 -18.251 -17.405 1 35.48 ? HO2' GCP 201 A 1 HETATM 46 H H1' GCP . . . B 2 11.615 -16.499 -20.226 1 33.54 ? H1' GCP 201 A 1 HETATM 47 H H8 GCP . . . B 2 11.582 -13.897 -17.328 1 28.09 ? H8 GCP 201 A 1 HETATM 48 H HN1 GCP . . . B 2 15.371 -12.55 -22.34 1 32.61 ? HN1 GCP 201 A 1 HETATM 49 H HN21 GCP . . . B 2 14.192 -15.581 -23.627 1 37.23 ? HN21 GCP 201 A 1 HETATM 50 H HN22 GCP . . . B 2 15.216 -14.178 -23.864 1 37.23 ? HN22 GCP 201 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #