data_6BPL # _model_server_result.job_id qBesVsi7KjgMTBbxPyN5Ng _model_server_result.datetime_utc '2025-01-09 07:56:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 6BPL # _exptl.entry_id 6BPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 748.065 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.39 _cell.angle_gamma 90 _cell.entry_id 6BPL _cell.length_a 74.747 _cell.length_b 91.606 _cell.length_c 111.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GMH C1 O1 . O3 HO3 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O3 HO3 . sing 3 ? 2 4 2 GLC GLC C1 O1 . O6 HO6 . sing 4 ? 2 5 1 GMH GMH C1 O1 . O7 HO7 . sing 5 ? 3 2 1 KDO GCS C2 O2 . O6 HO6 . sing 6 ? 3 3 2 KDO KDO C2 O2 . O4 HO4 . sing 7 ? 3 4 2 GMH KDO C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GMH 1 C 1 GMH L 2015 GMH 2 n C GLC 2 C 2 GLC L 2016 GLC 2 n C GLC 3 C 3 GLC L 2018 GLC 2 n C GLC 4 C 4 GLC L 2019 GLC 2 n C GMH 5 C 5 GMH L 2017 GMH 3 n D GCS 1 D 1 GCS L 2005 GCS 3 n D KDO 2 D 2 KDO L 2011 KDO 3 n D KDO 3 D 3 KDO L 2012 KDO 3 n D GMH 4 D 4 GMH L 2013 GMH # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 FTT . A FTT 603 1_555 P N2 PA1 . B PA1 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 H O3 FTT . A FTT 604 1_555 S C1 DAO . B DAO 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 H C1 FTT . A FTT 604 1_555 D N2 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 I O3 FTT . A FTT 605 1_555 J C1 MYR . A MYR 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale5 I C1 FTT . A FTT 605 1_555 D O3 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale6 K P PO4 . A PO4 607 1_555 D O4 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale7 P O1 PA1 . B PA1 605 1_555 Q P PO4 . B PO4 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale8 P O3 PA1 . B PA1 605 1_555 R C1 FTT . B FTT 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale9 T P1 DPO . B DPO 609 1_555 D O4 GMH . D GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale10 C O3 GMH . C GMH 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 C O7 GMH . C GMH 1 1_555 C C1 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 C O3 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale13 C O6 GLC . C GLC 2 1_555 C C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 D O6 GCS . D GCS 1 1_555 D C2 KDO . D KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale15 D O4 KDO . D KDO 2 1_555 D C2 KDO . D KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale16 D O5 KDO . D KDO 2 1_555 D C1 GMH . D GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 6BPL _atom_sites.fract_transf_matrix[1][1] 0.013378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 3PE A 1 601 2 3PE 3PE . F 5 AU7 A 1 602 1 AU7 DRG . G 6 FTT A 1 603 2003 FTT FTT . H 6 FTT A 1 604 2006 FTT FTT . I 6 FTT A 1 605 2008 FTT FTT . J 7 MYR A 1 606 2009 MYR MYR . K 8 PO4 A 1 607 2010 PO4 PO4 . L 4 3PE B 1 601 1 3PE 3PE . M 4 3PE B 1 602 3 3PE 3PE . N 4 3PE B 1 603 4 3PE 3PE . O 5 AU7 B 1 604 2 AU7 DRG . P 9 PA1 B 1 605 2001 PA1 PA1 . Q 8 PO4 B 1 606 2002 PO4 PO4 . R 6 FTT B 1 607 2004 FTT FTT . S 10 DAO B 1 608 2007 DAO DAO . T 11 DPO B 1 609 2014 DPO DPO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . L 4 -81.252 24.693 42.656 1 119.9 ? P 3PE 601 B 1 HETATM 2 N N 3PE . . . L 4 -84.353 22.753 46.335 1 103.38 ? N 3PE 601 B 1 HETATM 3 O O11 3PE . . . L 4 -81.682 24.344 41.086 1 107.28 ? O11 3PE 601 B 1 HETATM 4 O O12 3PE . . . L 4 -82.104 25.832 43.09 1 109.09 ? O12 3PE 601 B 1 HETATM 5 O O13 3PE . . . L 4 -81.909 23.347 43.704 1 104.16 ? O13 3PE 601 B 1 HETATM 6 O O14 3PE . . . L 4 -79.805 24.464 42.881 1 105.1 ? O14 3PE 601 B 1 HETATM 7 C C11 3PE . . . L 4 -82.575 23.702 44.833 1 100.83 ? C11 3PE 601 B 1 HETATM 8 C C12 3PE . . . L 4 -83.891 22.851 44.875 1 88.95 ? C12 3PE 601 B 1 HETATM 9 C C1 3PE . . . L 4 -82.089 23.084 40.659 1 104.74 ? C1 3PE 601 B 1 HETATM 10 C C2 3PE . . . L 4 -80.834 22.173 40.628 1 102.04 ? C2 3PE 601 B 1 HETATM 11 C C3 3PE . . . L 4 -79.584 22.929 40.007 1 88.63 ? C3 3PE 601 B 1 HETATM 12 O O31 3PE . . . L 4 -79.87 23.539 38.731 1 85.85 ? O31 3PE 601 B 1 HETATM 13 O O32 3PE . . . L 4 -80.4 21.562 37.825 1 89.39 ? O32 3PE 601 B 1 HETATM 14 C C31 3PE . . . L 4 -80.106 22.731 37.644 1 98.26 ? C31 3PE 601 B 1 HETATM 15 C C32 3PE . . . L 4 -79.991 23.342 36.238 1 88.53 ? C32 3PE 601 B 1 HETATM 16 O O21 3PE . . . L 4 -80.472 21.802 41.996 1 101.98 ? O21 3PE 601 B 1 HETATM 17 O O22 3PE . . . L 4 -80.457 20.203 43.569 1 91.81 ? O22 3PE 601 B 1 HETATM 18 C C21 3PE . . . L 4 -81.052 20.716 42.64 1 104.87 ? C21 3PE 601 B 1 HETATM 19 C C22 3PE . . . L 4 -82.424 20.162 42.195 1 104.28 ? C22 3PE 601 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 656 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 19 #