data_6BPL # _model_server_result.job_id rosph_Z7aDH1c9dosdpiuQ _model_server_result.datetime_utc '2025-01-09 07:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":606}' # _entry.id 6BPL # _exptl.entry_id 6BPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.39 _cell.angle_gamma 90 _cell.entry_id 6BPL _cell.length_a 74.747 _cell.length_b 91.606 _cell.length_c 111.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GMH C1 O1 . O3 HO3 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O3 HO3 . sing 3 ? 2 4 2 GLC GLC C1 O1 . O6 HO6 . sing 4 ? 2 5 1 GMH GMH C1 O1 . O7 HO7 . sing 5 ? 3 2 1 KDO GCS C2 O2 . O6 HO6 . sing 6 ? 3 3 2 KDO KDO C2 O2 . O4 HO4 . sing 7 ? 3 4 2 GMH KDO C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GMH 1 C 1 GMH L 2015 GMH 2 n C GLC 2 C 2 GLC L 2016 GLC 2 n C GLC 3 C 3 GLC L 2018 GLC 2 n C GLC 4 C 4 GLC L 2019 GLC 2 n C GMH 5 C 5 GMH L 2017 GMH 3 n D GCS 1 D 1 GCS L 2005 GCS 3 n D KDO 2 D 2 KDO L 2011 KDO 3 n D KDO 3 D 3 KDO L 2012 KDO 3 n D GMH 4 D 4 GMH L 2013 GMH # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 FTT . A FTT 603 1_555 P N2 PA1 . B PA1 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 H O3 FTT . A FTT 604 1_555 S C1 DAO . B DAO 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 H C1 FTT . A FTT 604 1_555 D N2 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 I O3 FTT . A FTT 605 1_555 J C1 MYR . A MYR 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale5 I C1 FTT . A FTT 605 1_555 D O3 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale6 K P PO4 . A PO4 607 1_555 D O4 GCS . D GCS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale7 P O1 PA1 . B PA1 605 1_555 Q P PO4 . B PO4 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale8 P O3 PA1 . B PA1 605 1_555 R C1 FTT . B FTT 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale9 T P1 DPO . B DPO 609 1_555 D O4 GMH . D GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale10 C O3 GMH . C GMH 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 C O7 GMH . C GMH 1 1_555 C C1 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 C O3 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale13 C O6 GLC . C GLC 2 1_555 C C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 D O6 GCS . D GCS 1 1_555 D C2 KDO . D KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale15 D O4 KDO . D KDO 2 1_555 D C2 KDO . D KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale16 D O5 KDO . D KDO 2 1_555 D C1 GMH . D GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 622 n n C1 O2 MYR sing 623 n n C1 C2 MYR sing 624 n n O2 HO2 MYR sing 625 n n C2 C3 MYR sing 626 n n C2 H21 MYR sing 627 n n C2 H22 MYR sing 628 n n C3 C4 MYR sing 629 n n C3 H31 MYR sing 630 n n C3 H32 MYR sing 631 n n C4 C5 MYR sing 632 n n C4 H41 MYR sing 633 n n C4 H42 MYR sing 634 n n C5 C6 MYR sing 635 n n C5 H51 MYR sing 636 n n C5 H52 MYR sing 637 n n C6 C7 MYR sing 638 n n C6 H61 MYR sing 639 n n C6 H62 MYR sing 640 n n C7 C8 MYR sing 641 n n C7 H71 MYR sing 642 n n C7 H72 MYR sing 643 n n C8 C9 MYR sing 644 n n C8 H81 MYR sing 645 n n C8 H82 MYR sing 646 n n C9 C10 MYR sing 647 n n C9 H91 MYR sing 648 n n C9 H92 MYR sing 649 n n C10 C11 MYR sing 650 n n C10 H101 MYR sing 651 n n C10 H102 MYR sing 652 n n C11 C12 MYR sing 653 n n C11 H111 MYR sing 654 n n C11 H112 MYR sing 655 n n C12 C13 MYR sing 656 n n C12 H121 MYR sing 657 n n C12 H122 MYR sing 658 n n C13 C14 MYR sing 659 n n C13 H131 MYR sing 660 n n C13 H132 MYR sing 661 n n C14 H141 MYR sing 662 n n C14 H142 MYR sing 663 n n C14 H143 MYR sing 664 n n # _atom_sites.entry_id 6BPL _atom_sites.fract_transf_matrix[1][1] 0.013378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 3PE A 1 601 2 3PE 3PE . F 5 AU7 A 1 602 1 AU7 DRG . G 6 FTT A 1 603 2003 FTT FTT . H 6 FTT A 1 604 2006 FTT FTT . I 6 FTT A 1 605 2008 FTT FTT . J 7 MYR A 1 606 2009 MYR MYR . K 8 PO4 A 1 607 2010 PO4 PO4 . L 4 3PE B 1 601 1 3PE 3PE . M 4 3PE B 1 602 3 3PE 3PE . N 4 3PE B 1 603 4 3PE 3PE . O 5 AU7 B 1 604 2 AU7 DRG . P 9 PA1 B 1 605 2001 PA1 PA1 . Q 8 PO4 B 1 606 2002 PO4 PO4 . R 6 FTT B 1 607 2004 FTT FTT . S 10 DAO B 1 608 2007 DAO DAO . T 11 DPO B 1 609 2014 DPO DPO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . J 7 -56.682 23.961 37.999 1 101.14 ? C1 MYR 606 A 1 HETATM 2 O O1 MYR . . . J 7 -56.525 24.726 37.021 1 95.55 ? O1 MYR 606 A 1 HETATM 3 C C2 MYR . . . J 7 -57.591 24.384 39.131 1 85.79 ? C2 MYR 606 A 1 HETATM 4 C C3 MYR . . . J 7 -57.012 25.599 39.844 1 73.4 ? C3 MYR 606 A 1 HETATM 5 C C4 MYR . . . J 7 -57.296 26.877 39.066 1 80.63 ? C4 MYR 606 A 1 HETATM 6 C C5 MYR . . . J 7 -57.224 28.088 39.991 1 83.76 ? C5 MYR 606 A 1 HETATM 7 C C6 MYR . . . J 7 -58.421 28.115 40.936 1 72.67 ? C6 MYR 606 A 1 HETATM 8 C C7 MYR . . . J 7 -58.048 28.7 42.292 1 73.94 ? C7 MYR 606 A 1 HETATM 9 C C8 MYR . . . J 7 -59.02 28.221 43.365 1 83.03 ? C8 MYR 606 A 1 HETATM 10 C C9 MYR . . . J 7 -58.501 28.523 44.766 1 65.25 ? C9 MYR 606 A 1 HETATM 11 C C10 MYR . . . J 7 -59.597 28.32 45.806 1 65.26 ? C10 MYR 606 A 1 HETATM 12 C C11 MYR . . . J 7 -60.245 29.648 46.19 1 76.54 ? C11 MYR 606 A 1 HETATM 13 C C12 MYR . . . J 7 -61.475 29.43 47.066 1 76.42 ? C12 MYR 606 A 1 HETATM 14 C C13 MYR . . . J 7 -61.179 28.436 48.184 1 75.75 ? C13 MYR 606 A 1 HETATM 15 C C14 MYR . . . J 7 -62.392 28.205 49.06 1 72.68 ? C14 MYR 606 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 15 #