data_6BPP # _model_server_result.job_id I7WIQmsppLfjdmmCxfgNZw _model_server_result.datetime_utc '2024-11-21 13:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 6BPP # _exptl.entry_id 6BPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.29 _cell.angle_gamma 90 _cell.entry_id 6BPP _cell.length_a 256.286 _cell.length_b 89.786 _cell.length_c 72.509 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GCS PA1 C1 O1 . O6 HO6 . sing 2 ? 2 3 2 KDO GCS C2 O2 . O6 HO6 . sing 3 ? 2 4 3 GMH KDO C1 O1 . O5 HO5 . sing 4 ? 2 5 4 GMH GMH C1 O1 . O3 HO3 . sing 5 ? 2 6 5 GLC GMH C1 O1 . O3 HO3 . sing 6 ? 2 7 6 GLC GLC C1 O1 . O3 HO3 . sing 7 ? 2 8 6 GLC GLC C1 O1 . O6 HO6 . sing 8 ? 2 9 5 GMH GMH C1 O1 . O7 HO7 . sing 9 ? 2 10 3 KDO KDO C2 O2 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C PA1 1 C 1 PA1 L 2001 PA1 2 n C GCS 2 C 2 GCS L 2005 GCS 2 n C KDO 3 C 3 KDO L 2011 KDO 2 n C GMH 4 C 4 GMH L 2013 GMH 2 n C GMH 5 C 5 GMH L 2015 GMH 2 n C GLC 6 C 6 GLC L 2016 GLC 2 n C GLC 7 C 7 GLC L 2018 GLC 2 n C GLC 8 C 8 GLC L 2019 GLC 2 n C GMH 9 C 9 GMH L 2017 GMH 2 n C KDO 10 C 10 KDO L 2012 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 FTT . A FTT 602 1_555 C N2 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 F C1 DAO . A DAO 603 1_555 O O3 FTT . B FTT 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 G O3 FTT . A FTT 604 1_555 P C1 MYR . B MYR 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 G C1 FTT . A FTT 604 1_555 C O3 GCS . C GCS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale5 M P PO4 . B PO4 612 1_555 C O1 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale6 N C1 FTT . B FTT 613 1_555 C O3 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale7 O C1 FTT . B FTT 614 1_555 C N2 GCS . C GCS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 Q P PO4 . B PO4 616 1_555 C O4 GCS . C GCS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale9 C O6 PA1 . C PA1 1 1_555 C C1 GCS . C GCS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 C O6 GCS . C GCS 2 1_555 C C2 KDO . C KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 C O5 KDO . C KDO 3 1_555 C C1 GMH . C GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 C O4 KDO . C KDO 3 1_555 C C2 KDO . C KDO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale13 C O3 GMH . C GMH 4 1_555 C C1 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 C O3 GMH . C GMH 5 1_555 C C1 GLC . C GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale15 C O7 GMH . C GMH 5 1_555 C C1 GMH . C GMH 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 C O3 GLC . C GLC 6 1_555 C C1 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 C O6 GLC . C GLC 6 1_555 C C1 GLC . C GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 699 n n P O2 PO4 sing 700 n n P O3 PO4 sing 701 n n P O4 PO4 sing 702 n n # _atom_sites.entry_id 6BPP _atom_sites.fract_transf_matrix[1][1] 0.003902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000088 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 E1M A 1 601 1 E1M DRG . E 4 FTT A 1 602 2003 FTT FTT . F 5 DAO A 1 603 2007 DAO DAO . G 4 FTT A 1 604 2008 FTT FTT . H 6 3PE A 1 605 2 3PE 3PE . I 6 3PE A 1 606 6 3PE 3PE . J 6 3PE A 1 607 9 3PE 3PE . K 6 3PE A 1 608 10 3PE 3PE . L 3 E1M B 1 601 2 E1M DRG . M 7 PO4 B 1 612 2002 PO4 PO4 . N 4 FTT B 1 613 2004 FTT FTT . O 4 FTT B 1 614 2006 FTT FTT . P 8 MYR B 1 615 2009 MYR MYR . Q 7 PO4 B 1 616 2010 PO4 PO4 . R 6 3PE B 1 617 1 3PE 3PE . S 6 3PE B 1 618 3 3PE 3PE . T 6 3PE B 1 619 5 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 7 -34.635 6.972 27.64 1 114.59 ? P PO4 612 B 1 HETATM 2 O O2 PO4 . . . M 7 -35.895 6.174 27.868 1 107.01 ? O2 PO4 612 B 1 HETATM 3 O O3 PO4 . . . M 7 -33.54 6.421 28.527 1 93.23 ? O3 PO4 612 B 1 HETATM 4 O O4 PO4 . . . M 7 -34.944 8.384 28.068 1 108.57 ? O4 PO4 612 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #