data_6BPU # _model_server_result.job_id yPLLJwxrrw5J9HjRIdL76Q _model_server_result.datetime_utc '2024-11-16 08:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6BPU # _exptl.entry_id 6BPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BPU _cell.length_a 131.385 _cell.length_b 131.385 _cell.length_c 34.246 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 93 1_555 A CE1 F2Y 157 A F2Y 157 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.825 ? covale ? covale2 A C LEU 156 A LEU 156 1_555 A N F2Y 157 A F2Y 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C F2Y 157 A F2Y 157 1_555 A N SER 158 A SER 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 A NE2 HIS 140 A HIS 140 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 B FE FE2 . A FE2 301 1_555 J O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 B FE FE2 . A FE2 301 1_555 J O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 B FE FE2 . A FE2 301 1_555 J O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 6BPU _atom_sites.fract_transf_matrix[1][1] 0.007611 _atom_sites.fract_transf_matrix[1][2] 0.004394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 301 200 FE2 FE2 . C 3 SO4 A 1 302 192 SO4 SO4 . D 3 SO4 A 1 303 193 SO4 SO4 . E 3 SO4 A 1 304 194 SO4 SO4 . F 4 GOL A 1 305 196 GOL GOL . G 4 GOL A 1 306 197 GOL GOL . H 4 GOL A 1 307 198 GOL GOL . I 4 GOL A 1 308 199 GOL GOL . J 5 HOH A 1 401 158 HOH HOH . J 5 HOH A 2 402 159 HOH HOH . J 5 HOH A 3 403 110 HOH HOH . J 5 HOH A 4 404 141 HOH HOH . J 5 HOH A 5 405 106 HOH HOH . J 5 HOH A 6 406 157 HOH HOH . J 5 HOH A 7 407 25 HOH HOH . J 5 HOH A 8 408 7 HOH HOH . J 5 HOH A 9 409 154 HOH HOH . J 5 HOH A 10 410 66 HOH HOH . J 5 HOH A 11 411 5 HOH HOH . J 5 HOH A 12 412 146 HOH HOH . J 5 HOH A 13 413 12 HOH HOH . J 5 HOH A 14 414 149 HOH HOH . J 5 HOH A 15 415 138 HOH HOH . J 5 HOH A 16 416 85 HOH HOH . J 5 HOH A 17 417 46 HOH HOH . J 5 HOH A 18 418 16 HOH HOH . J 5 HOH A 19 419 96 HOH HOH . J 5 HOH A 20 420 37 HOH HOH . J 5 HOH A 21 421 63 HOH HOH . J 5 HOH A 22 422 30 HOH HOH . J 5 HOH A 23 423 35 HOH HOH . J 5 HOH A 24 424 23 HOH HOH . J 5 HOH A 25 425 64 HOH HOH . J 5 HOH A 26 426 103 HOH HOH . J 5 HOH A 27 427 47 HOH HOH . J 5 HOH A 28 428 43 HOH HOH . J 5 HOH A 29 429 99 HOH HOH . J 5 HOH A 30 430 105 HOH HOH . J 5 HOH A 31 431 53 HOH HOH . J 5 HOH A 32 432 136 HOH HOH . J 5 HOH A 33 433 27 HOH HOH . J 5 HOH A 34 434 4 HOH HOH . J 5 HOH A 35 435 54 HOH HOH . J 5 HOH A 36 436 11 HOH HOH . J 5 HOH A 37 437 44 HOH HOH . J 5 HOH A 38 438 28 HOH HOH . J 5 HOH A 39 439 52 HOH HOH . J 5 HOH A 40 440 17 HOH HOH . J 5 HOH A 41 441 18 HOH HOH . J 5 HOH A 42 442 29 HOH HOH . J 5 HOH A 43 443 62 HOH HOH . J 5 HOH A 44 444 102 HOH HOH . J 5 HOH A 45 445 13 HOH HOH . J 5 HOH A 46 446 75 HOH HOH . J 5 HOH A 47 447 51 HOH HOH . J 5 HOH A 48 448 50 HOH HOH . J 5 HOH A 49 449 107 HOH HOH . J 5 HOH A 50 450 42 HOH HOH . J 5 HOH A 51 451 34 HOH HOH . J 5 HOH A 52 452 100 HOH HOH . J 5 HOH A 53 453 55 HOH HOH . J 5 HOH A 54 454 128 HOH HOH . J 5 HOH A 55 455 130 HOH HOH . J 5 HOH A 56 456 49 HOH HOH . J 5 HOH A 57 457 15 HOH HOH . J 5 HOH A 58 458 39 HOH HOH . J 5 HOH A 59 459 124 HOH HOH . J 5 HOH A 60 460 156 HOH HOH . J 5 HOH A 61 461 122 HOH HOH . J 5 HOH A 62 462 81 HOH HOH . J 5 HOH A 63 463 36 HOH HOH . J 5 HOH A 64 464 82 HOH HOH . J 5 HOH A 65 465 144 HOH HOH . J 5 HOH A 66 466 41 HOH HOH . J 5 HOH A 67 467 59 HOH HOH . J 5 HOH A 68 468 32 HOH HOH . J 5 HOH A 69 469 8 HOH HOH . J 5 HOH A 70 470 26 HOH HOH . J 5 HOH A 71 471 117 HOH HOH . J 5 HOH A 72 472 31 HOH HOH . J 5 HOH A 73 473 67 HOH HOH . J 5 HOH A 74 474 45 HOH HOH . J 5 HOH A 75 475 116 HOH HOH . J 5 HOH A 76 476 20 HOH HOH . J 5 HOH A 77 477 9 HOH HOH . J 5 HOH A 78 478 69 HOH HOH . J 5 HOH A 79 479 48 HOH HOH . J 5 HOH A 80 480 56 HOH HOH . J 5 HOH A 81 481 24 HOH HOH . J 5 HOH A 82 482 57 HOH HOH . J 5 HOH A 83 483 3 HOH HOH . J 5 HOH A 84 484 101 HOH HOH . J 5 HOH A 85 485 83 HOH HOH . J 5 HOH A 86 486 76 HOH HOH . J 5 HOH A 87 487 58 HOH HOH . J 5 HOH A 88 488 19 HOH HOH . J 5 HOH A 89 489 90 HOH HOH . J 5 HOH A 90 490 137 HOH HOH . J 5 HOH A 91 491 70 HOH HOH . J 5 HOH A 92 492 22 HOH HOH . J 5 HOH A 93 493 95 HOH HOH . J 5 HOH A 94 494 115 HOH HOH . J 5 HOH A 95 495 88 HOH HOH . J 5 HOH A 96 496 113 HOH HOH . J 5 HOH A 97 497 65 HOH HOH . J 5 HOH A 98 498 92 HOH HOH . J 5 HOH A 99 499 87 HOH HOH . J 5 HOH A 100 500 74 HOH HOH . J 5 HOH A 101 501 10 HOH HOH . J 5 HOH A 102 502 145 HOH HOH . J 5 HOH A 103 503 98 HOH HOH . J 5 HOH A 104 504 68 HOH HOH . J 5 HOH A 105 505 38 HOH HOH . J 5 HOH A 106 506 14 HOH HOH . J 5 HOH A 107 507 114 HOH HOH . J 5 HOH A 108 508 132 HOH HOH . J 5 HOH A 109 509 78 HOH HOH . J 5 HOH A 110 510 40 HOH HOH . J 5 HOH A 111 511 129 HOH HOH . J 5 HOH A 112 512 86 HOH HOH . J 5 HOH A 113 513 61 HOH HOH . J 5 HOH A 114 514 126 HOH HOH . J 5 HOH A 115 515 6 HOH HOH . J 5 HOH A 116 516 21 HOH HOH . J 5 HOH A 117 517 94 HOH HOH . J 5 HOH A 118 518 33 HOH HOH . J 5 HOH A 119 519 91 HOH HOH . J 5 HOH A 120 520 112 HOH HOH . J 5 HOH A 121 521 123 HOH HOH . J 5 HOH A 122 522 121 HOH HOH . J 5 HOH A 123 523 148 HOH HOH . J 5 HOH A 124 524 93 HOH HOH . J 5 HOH A 125 525 71 HOH HOH . J 5 HOH A 126 526 153 HOH HOH . J 5 HOH A 127 527 79 HOH HOH . J 5 HOH A 128 528 151 HOH HOH . J 5 HOH A 129 529 142 HOH HOH . J 5 HOH A 130 530 80 HOH HOH . J 5 HOH A 131 531 73 HOH HOH . J 5 HOH A 132 532 111 HOH HOH . J 5 HOH A 133 533 2 HOH HOH . J 5 HOH A 134 534 72 HOH HOH . J 5 HOH A 135 535 89 HOH HOH . J 5 HOH A 136 536 152 HOH HOH . J 5 HOH A 137 537 143 HOH HOH . J 5 HOH A 138 538 134 HOH HOH . J 5 HOH A 139 539 155 HOH HOH . J 5 HOH A 140 540 60 HOH HOH . J 5 HOH A 141 541 131 HOH HOH . J 5 HOH A 142 542 118 HOH HOH . J 5 HOH A 143 543 150 HOH HOH . J 5 HOH A 144 544 140 HOH HOH . J 5 HOH A 145 545 120 HOH HOH . J 5 HOH A 146 546 119 HOH HOH . J 5 HOH A 147 547 127 HOH HOH . J 5 HOH A 148 548 147 HOH HOH . J 5 HOH A 149 549 97 HOH HOH . J 5 HOH A 150 550 77 HOH HOH . J 5 HOH A 151 551 125 HOH HOH . J 5 HOH A 152 552 108 HOH HOH . J 5 HOH A 153 553 104 HOH HOH . J 5 HOH A 154 554 139 HOH HOH . J 5 HOH A 155 555 84 HOH HOH . J 5 HOH A 156 556 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -35.233 37.472 -1.139 1 63.21 ? C1 GOL 306 A 1 HETATM 2 O O1 GOL . . . G 4 -34.247 36.901 -1.945 1 61.82 ? O1 GOL 306 A 1 HETATM 3 C C2 GOL . . . G 4 -34.628 38.785 -0.598 1 50.27 ? C2 GOL 306 A 1 HETATM 4 O O2 GOL . . . G 4 -35.522 39.846 -0.624 1 44.44 ? O2 GOL 306 A 1 HETATM 5 C C3 GOL . . . G 4 -34.129 38.434 0.787 1 48.75 ? C3 GOL 306 A 1 HETATM 6 O O3 GOL . . . G 4 -33.189 39.406 1.128 1 57.99 ? O3 GOL 306 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #