data_6BPW # _model_server_result.job_id nKzsM7Kq0xQwOcinXDLtOw _model_server_result.datetime_utc '2024-11-16 06:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6BPW # _exptl.entry_id 6BPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BPW _cell.length_a 131.098 _cell.length_b 131.098 _cell.length_c 34.292 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 93 1_555 A CE1 2LT 157 A 2LT 157 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.76 ? covale ? covale2 A C LEU 156 A LEU 156 1_555 A N 2LT 157 A 2LT 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C 2LT 157 A 2LT 157 1_555 A N SER 158 A SER 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 A NE2 HIS 140 A HIS 140 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 B FE FE2 . A FE2 301 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc5 B FE FE2 . A FE2 301 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc6 B FE FE2 . A FE2 301 1_555 L O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 6BPW _atom_sites.fract_transf_matrix[1][1] 0.007628 _atom_sites.fract_transf_matrix[1][2] 0.004404 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 301 201 FE2 FE2 . C 3 GOL A 1 302 201 GOL GOL . D 3 GOL A 1 303 202 GOL GOL . E 3 GOL A 1 304 203 GOL GOL . F 3 GOL A 1 305 204 GOL GOL . G 3 GOL A 1 306 205 GOL GOL . H 3 GOL A 1 307 206 GOL GOL . I 4 SO4 A 1 308 301 SO4 SO4 . J 4 SO4 A 1 309 302 SO4 SO4 . K 4 SO4 A 1 310 303 SO4 SO4 . L 5 HOH A 1 401 68 HOH HOH . L 5 HOH A 2 402 4 HOH HOH . L 5 HOH A 3 403 48 HOH HOH . L 5 HOH A 4 404 49 HOH HOH . L 5 HOH A 5 405 65 HOH HOH . L 5 HOH A 6 406 19 HOH HOH . L 5 HOH A 7 407 12 HOH HOH . L 5 HOH A 8 408 2 HOH HOH . L 5 HOH A 9 409 14 HOH HOH . L 5 HOH A 10 410 53 HOH HOH . L 5 HOH A 11 411 15 HOH HOH . L 5 HOH A 12 412 45 HOH HOH . L 5 HOH A 13 413 56 HOH HOH . L 5 HOH A 14 414 50 HOH HOH . L 5 HOH A 15 415 27 HOH HOH . L 5 HOH A 16 416 82 HOH HOH . L 5 HOH A 17 417 13 HOH HOH . L 5 HOH A 18 418 9 HOH HOH . L 5 HOH A 19 419 33 HOH HOH . L 5 HOH A 20 420 44 HOH HOH . L 5 HOH A 21 421 66 HOH HOH . L 5 HOH A 22 422 70 HOH HOH . L 5 HOH A 23 423 20 HOH HOH . L 5 HOH A 24 424 51 HOH HOH . L 5 HOH A 25 425 21 HOH HOH . L 5 HOH A 26 426 11 HOH HOH . L 5 HOH A 27 427 29 HOH HOH . L 5 HOH A 28 428 54 HOH HOH . L 5 HOH A 29 429 30 HOH HOH . L 5 HOH A 30 430 18 HOH HOH . L 5 HOH A 31 431 22 HOH HOH . L 5 HOH A 32 432 28 HOH HOH . L 5 HOH A 33 433 8 HOH HOH . L 5 HOH A 34 434 39 HOH HOH . L 5 HOH A 35 435 41 HOH HOH . L 5 HOH A 36 436 17 HOH HOH . L 5 HOH A 37 437 24 HOH HOH . L 5 HOH A 38 438 59 HOH HOH . L 5 HOH A 39 439 35 HOH HOH . L 5 HOH A 40 440 16 HOH HOH . L 5 HOH A 41 441 31 HOH HOH . L 5 HOH A 42 442 79 HOH HOH . L 5 HOH A 43 443 80 HOH HOH . L 5 HOH A 44 444 37 HOH HOH . L 5 HOH A 45 445 62 HOH HOH . L 5 HOH A 46 446 67 HOH HOH . L 5 HOH A 47 447 63 HOH HOH . L 5 HOH A 48 448 64 HOH HOH . L 5 HOH A 49 449 61 HOH HOH . L 5 HOH A 50 450 84 HOH HOH . L 5 HOH A 51 451 78 HOH HOH . L 5 HOH A 52 452 25 HOH HOH . L 5 HOH A 53 453 77 HOH HOH . L 5 HOH A 54 454 42 HOH HOH . L 5 HOH A 55 455 74 HOH HOH . L 5 HOH A 56 456 47 HOH HOH . L 5 HOH A 57 457 38 HOH HOH . L 5 HOH A 58 458 90 HOH HOH . L 5 HOH A 59 459 23 HOH HOH . L 5 HOH A 60 460 40 HOH HOH . L 5 HOH A 61 461 26 HOH HOH . L 5 HOH A 62 462 43 HOH HOH . L 5 HOH A 63 463 46 HOH HOH . L 5 HOH A 64 464 55 HOH HOH . L 5 HOH A 65 465 3 HOH HOH . L 5 HOH A 66 466 69 HOH HOH . L 5 HOH A 67 467 87 HOH HOH . L 5 HOH A 68 468 72 HOH HOH . L 5 HOH A 69 469 52 HOH HOH . L 5 HOH A 70 470 32 HOH HOH . L 5 HOH A 71 471 83 HOH HOH . L 5 HOH A 72 472 91 HOH HOH . L 5 HOH A 73 473 85 HOH HOH . L 5 HOH A 74 474 88 HOH HOH . L 5 HOH A 75 475 1 HOH HOH . L 5 HOH A 76 476 76 HOH HOH . L 5 HOH A 77 477 89 HOH HOH . L 5 HOH A 78 478 5 HOH HOH . L 5 HOH A 79 479 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -48.221 25.135 1.846 1 63.47 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -47.867 23.858 1.415 1 63.9 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -48.144 25.12 3.394 1 76.35 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -46.907 24.649 3.844 1 94.55 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -48.426 26.587 3.844 1 67.63 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -49.354 26.524 4.89 1 72.4 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #