data_6BQ4 # _model_server_result.job_id -eJ7H8EpolN-wZ_jzfjwBw _model_server_result.datetime_utc '2024-11-28 20:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6BQ4 # _exptl.entry_id 6BQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BQ4 _cell.length_a 81.04 _cell.length_b 81.04 _cell.length_c 163.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 6BQ4 _atom_sites.fract_transf_matrix[1][1] 0.01234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN A 1 401 1 ADN ADN . D 3 B3P A 1 402 1 B3P B3P . E 4 GOL A 1 403 2 GOL GOL . F 2 ADN B 1 401 2 ADN ADN . G 5 MES B 1 402 1 MES MES . H 4 GOL B 1 403 1 GOL GOL . I 6 HOH A 1 501 116 HOH HOH . I 6 HOH A 2 502 127 HOH HOH . I 6 HOH A 3 503 175 HOH HOH . I 6 HOH A 4 504 177 HOH HOH . I 6 HOH A 5 505 114 HOH HOH . I 6 HOH A 6 506 64 HOH HOH . I 6 HOH A 7 507 113 HOH HOH . I 6 HOH A 8 508 137 HOH HOH . I 6 HOH A 9 509 124 HOH HOH . I 6 HOH A 10 510 65 HOH HOH . I 6 HOH A 11 511 135 HOH HOH . I 6 HOH A 12 512 63 HOH HOH . I 6 HOH A 13 513 99 HOH HOH . I 6 HOH A 14 514 57 HOH HOH . I 6 HOH A 15 515 140 HOH HOH . I 6 HOH A 16 516 136 HOH HOH . I 6 HOH A 17 517 117 HOH HOH . I 6 HOH A 18 518 169 HOH HOH . I 6 HOH A 19 519 98 HOH HOH . I 6 HOH A 20 520 81 HOH HOH . I 6 HOH A 21 521 58 HOH HOH . I 6 HOH A 22 522 51 HOH HOH . I 6 HOH A 23 523 95 HOH HOH . I 6 HOH A 24 524 104 HOH HOH . I 6 HOH A 25 525 115 HOH HOH . I 6 HOH A 26 526 139 HOH HOH . I 6 HOH A 27 527 73 HOH HOH . I 6 HOH A 28 528 44 HOH HOH . I 6 HOH A 29 529 37 HOH HOH . I 6 HOH A 30 530 118 HOH HOH . I 6 HOH A 31 531 67 HOH HOH . I 6 HOH A 32 532 45 HOH HOH . I 6 HOH A 33 533 62 HOH HOH . I 6 HOH A 34 534 129 HOH HOH . I 6 HOH A 35 535 76 HOH HOH . I 6 HOH A 36 536 90 HOH HOH . I 6 HOH A 37 537 79 HOH HOH . I 6 HOH A 38 538 146 HOH HOH . I 6 HOH A 39 539 69 HOH HOH . I 6 HOH A 40 540 165 HOH HOH . I 6 HOH A 41 541 78 HOH HOH . I 6 HOH A 42 542 162 HOH HOH . I 6 HOH A 43 543 120 HOH HOH . I 6 HOH A 44 544 87 HOH HOH . I 6 HOH A 45 545 93 HOH HOH . I 6 HOH A 46 546 26 HOH HOH . I 6 HOH A 47 547 75 HOH HOH . I 6 HOH A 48 548 60 HOH HOH . I 6 HOH A 49 549 170 HOH HOH . I 6 HOH A 50 550 166 HOH HOH . I 6 HOH A 51 551 167 HOH HOH . I 6 HOH A 52 552 144 HOH HOH . I 6 HOH A 53 553 74 HOH HOH . I 6 HOH A 54 554 106 HOH HOH . I 6 HOH A 55 555 100 HOH HOH . I 6 HOH A 56 556 80 HOH HOH . I 6 HOH A 57 557 132 HOH HOH . I 6 HOH A 58 558 71 HOH HOH . I 6 HOH A 59 559 68 HOH HOH . I 6 HOH A 60 560 46 HOH HOH . I 6 HOH A 61 561 61 HOH HOH . I 6 HOH A 62 562 138 HOH HOH . I 6 HOH A 63 563 49 HOH HOH . I 6 HOH A 64 564 59 HOH HOH . I 6 HOH A 65 565 159 HOH HOH . I 6 HOH A 66 566 101 HOH HOH . I 6 HOH A 67 567 52 HOH HOH . I 6 HOH A 68 568 50 HOH HOH . I 6 HOH A 69 569 92 HOH HOH . I 6 HOH A 70 570 56 HOH HOH . I 6 HOH A 71 571 154 HOH HOH . I 6 HOH A 72 572 89 HOH HOH . I 6 HOH A 73 573 70 HOH HOH . I 6 HOH A 74 574 55 HOH HOH . I 6 HOH A 75 575 54 HOH HOH . I 6 HOH A 76 576 97 HOH HOH . I 6 HOH A 77 577 83 HOH HOH . I 6 HOH A 78 578 111 HOH HOH . I 6 HOH A 79 579 102 HOH HOH . I 6 HOH A 80 580 85 HOH HOH . I 6 HOH A 81 581 72 HOH HOH . I 6 HOH A 82 582 145 HOH HOH . I 6 HOH A 83 583 77 HOH HOH . I 6 HOH A 84 584 31 HOH HOH . I 6 HOH A 85 585 131 HOH HOH . J 6 HOH B 1 501 103 HOH HOH . J 6 HOH B 2 502 66 HOH HOH . J 6 HOH B 3 503 18 HOH HOH . J 6 HOH B 4 504 179 HOH HOH . J 6 HOH B 5 505 30 HOH HOH . J 6 HOH B 6 506 2 HOH HOH . J 6 HOH B 7 507 109 HOH HOH . J 6 HOH B 8 508 17 HOH HOH . J 6 HOH B 9 509 176 HOH HOH . J 6 HOH B 10 510 82 HOH HOH . J 6 HOH B 11 511 6 HOH HOH . J 6 HOH B 12 512 16 HOH HOH . J 6 HOH B 13 513 20 HOH HOH . J 6 HOH B 14 514 178 HOH HOH . J 6 HOH B 15 515 9 HOH HOH . J 6 HOH B 16 516 133 HOH HOH . J 6 HOH B 17 517 35 HOH HOH . J 6 HOH B 18 518 28 HOH HOH . J 6 HOH B 19 519 42 HOH HOH . J 6 HOH B 20 520 4 HOH HOH . J 6 HOH B 21 521 151 HOH HOH . J 6 HOH B 22 522 123 HOH HOH . J 6 HOH B 23 523 84 HOH HOH . J 6 HOH B 24 524 43 HOH HOH . J 6 HOH B 25 525 160 HOH HOH . J 6 HOH B 26 526 128 HOH HOH . J 6 HOH B 27 527 29 HOH HOH . J 6 HOH B 28 528 150 HOH HOH . J 6 HOH B 29 529 130 HOH HOH . J 6 HOH B 30 530 15 HOH HOH . J 6 HOH B 31 531 96 HOH HOH . J 6 HOH B 32 532 107 HOH HOH . J 6 HOH B 33 533 12 HOH HOH . J 6 HOH B 34 534 141 HOH HOH . J 6 HOH B 35 535 8 HOH HOH . J 6 HOH B 36 536 122 HOH HOH . J 6 HOH B 37 537 88 HOH HOH . J 6 HOH B 38 538 161 HOH HOH . J 6 HOH B 39 539 125 HOH HOH . J 6 HOH B 40 540 40 HOH HOH . J 6 HOH B 41 541 36 HOH HOH . J 6 HOH B 42 542 38 HOH HOH . J 6 HOH B 43 543 121 HOH HOH . J 6 HOH B 44 544 1 HOH HOH . J 6 HOH B 45 545 39 HOH HOH . J 6 HOH B 46 546 153 HOH HOH . J 6 HOH B 47 547 48 HOH HOH . J 6 HOH B 48 548 168 HOH HOH . J 6 HOH B 49 549 172 HOH HOH . J 6 HOH B 50 550 10 HOH HOH . J 6 HOH B 51 551 155 HOH HOH . J 6 HOH B 52 552 47 HOH HOH . J 6 HOH B 53 553 19 HOH HOH . J 6 HOH B 54 554 171 HOH HOH . J 6 HOH B 55 555 25 HOH HOH . J 6 HOH B 56 556 13 HOH HOH . J 6 HOH B 57 557 156 HOH HOH . J 6 HOH B 58 558 22 HOH HOH . J 6 HOH B 59 559 143 HOH HOH . J 6 HOH B 60 560 11 HOH HOH . J 6 HOH B 61 561 152 HOH HOH . J 6 HOH B 62 562 91 HOH HOH . J 6 HOH B 63 563 108 HOH HOH . J 6 HOH B 64 564 119 HOH HOH . J 6 HOH B 65 565 7 HOH HOH . J 6 HOH B 66 566 126 HOH HOH . J 6 HOH B 67 567 164 HOH HOH . J 6 HOH B 68 568 41 HOH HOH . J 6 HOH B 69 569 105 HOH HOH . J 6 HOH B 70 570 14 HOH HOH . J 6 HOH B 71 571 173 HOH HOH . J 6 HOH B 72 572 110 HOH HOH . J 6 HOH B 73 573 147 HOH HOH . J 6 HOH B 74 574 5 HOH HOH . J 6 HOH B 75 575 148 HOH HOH . J 6 HOH B 76 576 34 HOH HOH . J 6 HOH B 77 577 163 HOH HOH . J 6 HOH B 78 578 112 HOH HOH . J 6 HOH B 79 579 33 HOH HOH . J 6 HOH B 80 580 142 HOH HOH . J 6 HOH B 81 581 27 HOH HOH . J 6 HOH B 82 582 149 HOH HOH . J 6 HOH B 83 583 23 HOH HOH . J 6 HOH B 84 584 157 HOH HOH . J 6 HOH B 85 585 3 HOH HOH . J 6 HOH B 86 586 158 HOH HOH . J 6 HOH B 87 587 53 HOH HOH . J 6 HOH B 88 588 174 HOH HOH . J 6 HOH B 89 589 32 HOH HOH . J 6 HOH B 90 590 86 HOH HOH . J 6 HOH B 91 591 24 HOH HOH . J 6 HOH B 92 592 134 HOH HOH . J 6 HOH B 93 593 21 HOH HOH . J 6 HOH B 94 594 180 HOH HOH . J 6 HOH B 95 595 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . F 2 22.243 44.732 14.176 1 37.3 ? O5' ADN 401 B 1 HETATM 2 C C5' ADN . . . F 2 21.198 44.985 15.068 1 34.73 ? C5' ADN 401 B 1 HETATM 3 C C4' ADN . . . F 2 20.681 46.39 14.92 1 33.67 ? C4' ADN 401 B 1 HETATM 4 O O4' ADN . . . F 2 21.66 47.284 15.332 1 33.21 ? O4' ADN 401 B 1 HETATM 5 C C3' ADN . . . F 2 20.342 46.754 13.505 1 33.37 ? C3' ADN 401 B 1 HETATM 6 O O3' ADN . . . F 2 19.042 47.277 13.533 1 31.52 ? O3' ADN 401 B 1 HETATM 7 C C2' ADN . . . F 2 21.342 47.844 13.191 1 34.54 ? C2' ADN 401 B 1 HETATM 8 O O2' ADN . . . F 2 20.82 48.811 12.329 1 34.1 ? O2' ADN 401 B 1 HETATM 9 C C1' ADN . . . F 2 21.627 48.421 14.544 1 33.09 ? C1' ADN 401 B 1 HETATM 10 N N9 ADN . . . F 2 22.943 49.049 14.685 1 32.84 ? N9 ADN 401 B 1 HETATM 11 C C8 ADN . . . F 2 24.12 48.636 14.256 1 30.44 ? C8 ADN 401 B 1 HETATM 12 N N7 ADN . . . F 2 25.067 49.485 14.621 1 31.89 ? N7 ADN 401 B 1 HETATM 13 C C5 ADN . . . F 2 24.51 50.438 15.327 1 30.27 ? C5 ADN 401 B 1 HETATM 14 C C6 ADN . . . F 2 24.944 51.64 16.019 1 32.43 ? C6 ADN 401 B 1 HETATM 15 N N6 ADN . . . F 2 26.216 52.021 16.033 1 31.01 ? N6 ADN 401 B 1 HETATM 16 N N1 ADN . . . F 2 24.012 52.343 16.63 1 31.35 ? N1 ADN 401 B 1 HETATM 17 C C2 ADN . . . F 2 22.745 51.994 16.614 1 34.4 ? C2 ADN 401 B 1 HETATM 18 N N3 ADN . . . F 2 22.28 50.924 16.018 1 30.6 ? N3 ADN 401 B 1 HETATM 19 C C4 ADN . . . F 2 23.104 50.133 15.365 1 31.42 ? C4 ADN 401 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #