data_6BQ5 # _model_server_result.job_id DKjvdDw7csGJfEXyb_i08w _model_server_result.datetime_utc '2024-11-17 00:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6BQ5 # _exptl.entry_id 6BQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BQ5 _cell.length_a 82.766 _cell.length_b 82.766 _cell.length_c 164.194 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 6BQ5 _atom_sites.fract_transf_matrix[1][1] 0.012082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B3P A 1 401 1 B3P B3P . D 3 MTA A 1 402 1 MTA MTA . E 4 GOL A 1 403 2 GOL GOL . F 4 GOL A 1 404 3 GOL GOL . G 2 B3P B 1 401 2 B3P B3P . H 3 MTA B 1 402 2 MTA MTA . I 4 GOL B 1 403 4 GOL GOL . J 5 HOH A 1 501 211 HOH HOH . J 5 HOH A 2 502 297 HOH HOH . J 5 HOH A 3 503 149 HOH HOH . J 5 HOH A 4 504 305 HOH HOH . J 5 HOH A 5 505 274 HOH HOH . J 5 HOH A 6 506 279 HOH HOH . J 5 HOH A 7 507 148 HOH HOH . J 5 HOH A 8 508 257 HOH HOH . J 5 HOH A 9 509 215 HOH HOH . J 5 HOH A 10 510 308 HOH HOH . J 5 HOH A 11 511 221 HOH HOH . J 5 HOH A 12 512 153 HOH HOH . J 5 HOH A 13 513 72 HOH HOH . J 5 HOH A 14 514 120 HOH HOH . J 5 HOH A 15 515 232 HOH HOH . J 5 HOH A 16 516 207 HOH HOH . J 5 HOH A 17 517 52 HOH HOH . J 5 HOH A 18 518 60 HOH HOH . J 5 HOH A 19 519 183 HOH HOH . J 5 HOH A 20 520 82 HOH HOH . J 5 HOH A 21 521 134 HOH HOH . J 5 HOH A 22 522 314 HOH HOH . J 5 HOH A 23 523 121 HOH HOH . J 5 HOH A 24 524 142 HOH HOH . J 5 HOH A 25 525 92 HOH HOH . J 5 HOH A 26 526 67 HOH HOH . J 5 HOH A 27 527 146 HOH HOH . J 5 HOH A 28 528 165 HOH HOH . J 5 HOH A 29 529 164 HOH HOH . J 5 HOH A 30 530 219 HOH HOH . J 5 HOH A 31 531 118 HOH HOH . J 5 HOH A 32 532 68 HOH HOH . J 5 HOH A 33 533 167 HOH HOH . J 5 HOH A 34 534 212 HOH HOH . J 5 HOH A 35 535 66 HOH HOH . J 5 HOH A 36 536 233 HOH HOH . J 5 HOH A 37 537 248 HOH HOH . J 5 HOH A 38 538 71 HOH HOH . J 5 HOH A 39 539 73 HOH HOH . J 5 HOH A 40 540 58 HOH HOH . J 5 HOH A 41 541 144 HOH HOH . J 5 HOH A 42 542 216 HOH HOH . J 5 HOH A 43 543 109 HOH HOH . J 5 HOH A 44 544 213 HOH HOH . J 5 HOH A 45 545 76 HOH HOH . J 5 HOH A 46 546 125 HOH HOH . J 5 HOH A 47 547 313 HOH HOH . J 5 HOH A 48 548 38 HOH HOH . J 5 HOH A 49 549 85 HOH HOH . J 5 HOH A 50 550 177 HOH HOH . J 5 HOH A 51 551 93 HOH HOH . J 5 HOH A 52 552 112 HOH HOH . J 5 HOH A 53 553 103 HOH HOH . J 5 HOH A 54 554 276 HOH HOH . J 5 HOH A 55 555 266 HOH HOH . J 5 HOH A 56 556 306 HOH HOH . J 5 HOH A 57 557 249 HOH HOH . J 5 HOH A 58 558 100 HOH HOH . J 5 HOH A 59 559 54 HOH HOH . J 5 HOH A 60 560 74 HOH HOH . J 5 HOH A 61 561 195 HOH HOH . J 5 HOH A 62 562 159 HOH HOH . J 5 HOH A 63 563 77 HOH HOH . J 5 HOH A 64 564 53 HOH HOH . J 5 HOH A 65 565 315 HOH HOH . J 5 HOH A 66 566 254 HOH HOH . J 5 HOH A 67 567 228 HOH HOH . J 5 HOH A 68 568 61 HOH HOH . J 5 HOH A 69 569 117 HOH HOH . J 5 HOH A 70 570 1 HOH HOH . J 5 HOH A 71 571 170 HOH HOH . J 5 HOH A 72 572 236 HOH HOH . J 5 HOH A 73 573 84 HOH HOH . J 5 HOH A 74 574 259 HOH HOH . J 5 HOH A 75 575 97 HOH HOH . J 5 HOH A 76 576 253 HOH HOH . J 5 HOH A 77 577 27 HOH HOH . J 5 HOH A 78 578 255 HOH HOH . J 5 HOH A 79 579 147 HOH HOH . J 5 HOH A 80 580 302 HOH HOH . J 5 HOH A 81 581 105 HOH HOH . J 5 HOH A 82 582 280 HOH HOH . J 5 HOH A 83 583 57 HOH HOH . J 5 HOH A 84 584 300 HOH HOH . J 5 HOH A 85 585 99 HOH HOH . J 5 HOH A 86 586 197 HOH HOH . J 5 HOH A 87 587 209 HOH HOH . J 5 HOH A 88 588 158 HOH HOH . J 5 HOH A 89 589 86 HOH HOH . J 5 HOH A 90 590 175 HOH HOH . J 5 HOH A 91 591 208 HOH HOH . J 5 HOH A 92 592 70 HOH HOH . J 5 HOH A 93 593 155 HOH HOH . J 5 HOH A 94 594 55 HOH HOH . J 5 HOH A 95 595 258 HOH HOH . J 5 HOH A 96 596 250 HOH HOH . J 5 HOH A 97 597 312 HOH HOH . J 5 HOH A 98 598 152 HOH HOH . J 5 HOH A 99 599 127 HOH HOH . J 5 HOH A 100 600 91 HOH HOH . J 5 HOH A 101 601 65 HOH HOH . J 5 HOH A 102 602 69 HOH HOH . J 5 HOH A 103 603 107 HOH HOH . J 5 HOH A 104 604 87 HOH HOH . J 5 HOH A 105 605 272 HOH HOH . J 5 HOH A 106 606 193 HOH HOH . J 5 HOH A 107 607 126 HOH HOH . J 5 HOH A 108 608 131 HOH HOH . J 5 HOH A 109 609 181 HOH HOH . J 5 HOH A 110 610 150 HOH HOH . J 5 HOH A 111 611 178 HOH HOH . J 5 HOH A 112 612 115 HOH HOH . J 5 HOH A 113 613 179 HOH HOH . J 5 HOH A 114 614 79 HOH HOH . J 5 HOH A 115 615 180 HOH HOH . J 5 HOH A 116 616 81 HOH HOH . J 5 HOH A 117 617 230 HOH HOH . J 5 HOH A 118 618 59 HOH HOH . J 5 HOH A 119 619 63 HOH HOH . J 5 HOH A 120 620 301 HOH HOH . J 5 HOH A 121 621 173 HOH HOH . J 5 HOH A 122 622 202 HOH HOH . J 5 HOH A 123 623 310 HOH HOH . J 5 HOH A 124 624 187 HOH HOH . J 5 HOH A 125 625 298 HOH HOH . J 5 HOH A 126 626 64 HOH HOH . J 5 HOH A 127 627 174 HOH HOH . J 5 HOH A 128 628 171 HOH HOH . J 5 HOH A 129 629 182 HOH HOH . J 5 HOH A 130 630 214 HOH HOH . J 5 HOH A 131 631 78 HOH HOH . J 5 HOH A 132 632 268 HOH HOH . J 5 HOH A 133 633 204 HOH HOH . J 5 HOH A 134 634 277 HOH HOH . J 5 HOH A 135 635 244 HOH HOH . J 5 HOH A 136 636 191 HOH HOH . J 5 HOH A 137 637 130 HOH HOH . J 5 HOH A 138 638 157 HOH HOH . J 5 HOH A 139 639 119 HOH HOH . J 5 HOH A 140 640 247 HOH HOH . J 5 HOH A 141 641 145 HOH HOH . J 5 HOH A 142 642 123 HOH HOH . J 5 HOH A 143 643 161 HOH HOH . J 5 HOH A 144 644 80 HOH HOH . J 5 HOH A 145 645 287 HOH HOH . J 5 HOH A 146 646 303 HOH HOH . J 5 HOH A 147 647 294 HOH HOH . J 5 HOH A 148 648 288 HOH HOH . J 5 HOH A 149 649 129 HOH HOH . J 5 HOH A 150 650 289 HOH HOH . J 5 HOH A 151 651 260 HOH HOH . J 5 HOH A 152 652 296 HOH HOH . J 5 HOH A 153 653 33 HOH HOH . J 5 HOH A 154 654 83 HOH HOH . J 5 HOH A 155 655 293 HOH HOH . J 5 HOH A 156 656 113 HOH HOH . J 5 HOH A 157 657 218 HOH HOH . J 5 HOH A 158 658 88 HOH HOH . K 5 HOH B 1 501 316 HOH HOH . K 5 HOH B 2 502 262 HOH HOH . K 5 HOH B 3 503 45 HOH HOH . K 5 HOH B 4 504 226 HOH HOH . K 5 HOH B 5 505 234 HOH HOH . K 5 HOH B 6 506 141 HOH HOH . K 5 HOH B 7 507 94 HOH HOH . K 5 HOH B 8 508 235 HOH HOH . K 5 HOH B 9 509 267 HOH HOH . K 5 HOH B 10 510 220 HOH HOH . K 5 HOH B 11 511 75 HOH HOH . K 5 HOH B 12 512 124 HOH HOH . K 5 HOH B 13 513 217 HOH HOH . K 5 HOH B 14 514 48 HOH HOH . K 5 HOH B 15 515 231 HOH HOH . K 5 HOH B 16 516 18 HOH HOH . K 5 HOH B 17 517 162 HOH HOH . K 5 HOH B 18 518 189 HOH HOH . K 5 HOH B 19 519 229 HOH HOH . K 5 HOH B 20 520 271 HOH HOH . K 5 HOH B 21 521 163 HOH HOH . K 5 HOH B 22 522 172 HOH HOH . K 5 HOH B 23 523 176 HOH HOH . K 5 HOH B 24 524 12 HOH HOH . K 5 HOH B 25 525 16 HOH HOH . K 5 HOH B 26 526 36 HOH HOH . K 5 HOH B 27 527 269 HOH HOH . K 5 HOH B 28 528 151 HOH HOH . K 5 HOH B 29 529 9 HOH HOH . K 5 HOH B 30 530 168 HOH HOH . K 5 HOH B 31 531 41 HOH HOH . K 5 HOH B 32 532 299 HOH HOH . K 5 HOH B 33 533 95 HOH HOH . K 5 HOH B 34 534 241 HOH HOH . K 5 HOH B 35 535 31 HOH HOH . K 5 HOH B 36 536 227 HOH HOH . K 5 HOH B 37 537 8 HOH HOH . K 5 HOH B 38 538 32 HOH HOH . K 5 HOH B 39 539 160 HOH HOH . K 5 HOH B 40 540 283 HOH HOH . K 5 HOH B 41 541 192 HOH HOH . K 5 HOH B 42 542 263 HOH HOH . K 5 HOH B 43 543 46 HOH HOH . K 5 HOH B 44 544 156 HOH HOH . K 5 HOH B 45 545 169 HOH HOH . K 5 HOH B 46 546 243 HOH HOH . K 5 HOH B 47 547 89 HOH HOH . K 5 HOH B 48 548 90 HOH HOH . K 5 HOH B 49 549 49 HOH HOH . K 5 HOH B 50 550 11 HOH HOH . K 5 HOH B 51 551 245 HOH HOH . K 5 HOH B 52 552 137 HOH HOH . K 5 HOH B 53 553 2 HOH HOH . K 5 HOH B 54 554 138 HOH HOH . K 5 HOH B 55 555 273 HOH HOH . K 5 HOH B 56 556 30 HOH HOH . K 5 HOH B 57 557 56 HOH HOH . K 5 HOH B 58 558 42 HOH HOH . K 5 HOH B 59 559 5 HOH HOH . K 5 HOH B 60 560 205 HOH HOH . K 5 HOH B 61 561 196 HOH HOH . K 5 HOH B 62 562 111 HOH HOH . K 5 HOH B 63 563 239 HOH HOH . K 5 HOH B 64 564 44 HOH HOH . K 5 HOH B 65 565 252 HOH HOH . K 5 HOH B 66 566 281 HOH HOH . K 5 HOH B 67 567 10 HOH HOH . K 5 HOH B 68 568 51 HOH HOH . K 5 HOH B 69 569 15 HOH HOH . K 5 HOH B 70 570 20 HOH HOH . K 5 HOH B 71 571 35 HOH HOH . K 5 HOH B 72 572 135 HOH HOH . K 5 HOH B 73 573 224 HOH HOH . K 5 HOH B 74 574 309 HOH HOH . K 5 HOH B 75 575 199 HOH HOH . K 5 HOH B 76 576 238 HOH HOH . K 5 HOH B 77 577 17 HOH HOH . K 5 HOH B 78 578 34 HOH HOH . K 5 HOH B 79 579 26 HOH HOH . K 5 HOH B 80 580 14 HOH HOH . K 5 HOH B 81 581 185 HOH HOH . K 5 HOH B 82 582 166 HOH HOH . K 5 HOH B 83 583 40 HOH HOH . K 5 HOH B 84 584 47 HOH HOH . K 5 HOH B 85 585 6 HOH HOH . K 5 HOH B 86 586 136 HOH HOH . K 5 HOH B 87 587 122 HOH HOH . K 5 HOH B 88 588 4 HOH HOH . K 5 HOH B 89 589 154 HOH HOH . K 5 HOH B 90 590 22 HOH HOH . K 5 HOH B 91 591 24 HOH HOH . K 5 HOH B 92 592 203 HOH HOH . K 5 HOH B 93 593 13 HOH HOH . K 5 HOH B 94 594 128 HOH HOH . K 5 HOH B 95 595 132 HOH HOH . K 5 HOH B 96 596 184 HOH HOH . K 5 HOH B 97 597 37 HOH HOH . K 5 HOH B 98 598 43 HOH HOH . K 5 HOH B 99 599 198 HOH HOH . K 5 HOH B 100 600 264 HOH HOH . K 5 HOH B 101 601 237 HOH HOH . K 5 HOH B 102 602 223 HOH HOH . K 5 HOH B 103 603 251 HOH HOH . K 5 HOH B 104 604 225 HOH HOH . K 5 HOH B 105 605 206 HOH HOH . K 5 HOH B 106 606 19 HOH HOH . K 5 HOH B 107 607 194 HOH HOH . K 5 HOH B 108 608 7 HOH HOH . K 5 HOH B 109 609 101 HOH HOH . K 5 HOH B 110 610 222 HOH HOH . K 5 HOH B 111 611 23 HOH HOH . K 5 HOH B 112 612 282 HOH HOH . K 5 HOH B 113 613 102 HOH HOH . K 5 HOH B 114 614 133 HOH HOH . K 5 HOH B 115 615 114 HOH HOH . K 5 HOH B 116 616 270 HOH HOH . K 5 HOH B 117 617 256 HOH HOH . K 5 HOH B 118 618 188 HOH HOH . K 5 HOH B 119 619 246 HOH HOH . K 5 HOH B 120 620 106 HOH HOH . K 5 HOH B 121 621 200 HOH HOH . K 5 HOH B 122 622 275 HOH HOH . K 5 HOH B 123 623 190 HOH HOH . K 5 HOH B 124 624 96 HOH HOH . K 5 HOH B 125 625 285 HOH HOH . K 5 HOH B 126 626 292 HOH HOH . K 5 HOH B 127 627 143 HOH HOH . K 5 HOH B 128 628 28 HOH HOH . K 5 HOH B 129 629 3 HOH HOH . K 5 HOH B 130 630 201 HOH HOH . K 5 HOH B 131 631 186 HOH HOH . K 5 HOH B 132 632 284 HOH HOH . K 5 HOH B 133 633 108 HOH HOH . K 5 HOH B 134 634 290 HOH HOH . K 5 HOH B 135 635 240 HOH HOH . K 5 HOH B 136 636 304 HOH HOH . K 5 HOH B 137 637 29 HOH HOH . K 5 HOH B 138 638 116 HOH HOH . K 5 HOH B 139 639 62 HOH HOH . K 5 HOH B 140 640 261 HOH HOH . K 5 HOH B 141 641 210 HOH HOH . K 5 HOH B 142 642 50 HOH HOH . K 5 HOH B 143 643 317 HOH HOH . K 5 HOH B 144 644 286 HOH HOH . K 5 HOH B 145 645 104 HOH HOH . K 5 HOH B 146 646 307 HOH HOH . K 5 HOH B 147 647 291 HOH HOH . K 5 HOH B 148 648 140 HOH HOH . K 5 HOH B 149 649 278 HOH HOH . K 5 HOH B 150 650 39 HOH HOH . K 5 HOH B 151 651 25 HOH HOH . K 5 HOH B 152 652 98 HOH HOH . K 5 HOH B 153 653 265 HOH HOH . K 5 HOH B 154 654 295 HOH HOH . K 5 HOH B 155 655 311 HOH HOH . K 5 HOH B 156 656 21 HOH HOH . K 5 HOH B 157 657 139 HOH HOH . K 5 HOH B 158 658 110 HOH HOH . K 5 HOH B 159 659 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 19.867 20.042 51.501 1 59.01 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . F 4 20.147 21.443 51.418 1 57.86 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . F 4 21.16 19.231 51.632 1 59.15 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . F 4 22.182 19.706 50.751 1 63.39 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . F 4 20.947 17.736 51.367 1 58.56 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . F 4 20.981 16.976 52.578 1 59.83 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #