data_6BQH # _model_server_result.job_id euQR0uZLCieQBDgNZzn5Lg _model_server_result.datetime_utc '2024-11-26 22:07:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 6BQH # _exptl.entry_id 6BQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BQH _cell.length_a 88.31 _cell.length_b 97.05 _cell.length_c 150.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 127 1_555 A SG CYS 194 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 375 A CYS 337 1_555 A SG CYS 379 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 353 n n C10 C9 OLC doub 354 n n C10 C11 OLC sing 355 n n C9 C8 OLC sing 356 n n C17 C16 OLC sing 357 z n C11 C12 OLC sing 358 n n C8 C7 OLC sing 359 n n C24 C22 OLC sing 360 n n C24 O25 OLC sing 361 n n C16 C15 OLC sing 362 n n C12 C13 OLC sing 363 n n C7 C6 OLC sing 364 n n C15 C14 OLC sing 365 n n C13 C14 OLC sing 366 n n C6 C5 OLC sing 367 n n C5 C4 OLC sing 368 n n C4 C3 OLC sing 369 n n C3 C2 OLC sing 370 n n C2 C1 OLC sing 371 n n C21 C22 OLC sing 372 n n C21 O20 OLC sing 373 n n C1 O19 OLC doub 374 n n C1 O20 OLC sing 375 n n C22 O23 OLC sing 376 n n C18 H18 OLC sing 377 n n C18 H18A OLC sing 378 n n C18 H18B OLC sing 379 n n C10 H10 OLC sing 380 n n C9 H9 OLC sing 381 n n C17 H17 OLC sing 382 n n C17 H17A OLC sing 383 n n C11 H11 OLC sing 384 n n C11 H11A OLC sing 385 n n C8 H8 OLC sing 386 n n C8 H8A OLC sing 387 n n C24 H24 OLC sing 388 n n C24 H24A OLC sing 389 n n C16 H16 OLC sing 390 n n C16 H16A OLC sing 391 n n C12 H12 OLC sing 392 n n C12 H12A OLC sing 393 n n C7 H7 OLC sing 394 n n C7 H7A OLC sing 395 n n C15 H15 OLC sing 396 n n C15 H15A OLC sing 397 n n C13 H13 OLC sing 398 n n C13 H13A OLC sing 399 n n C6 H6 OLC sing 400 n n C6 H6A OLC sing 401 n n C14 H14 OLC sing 402 n n C14 H14A OLC sing 403 n n C5 H5 OLC sing 404 n n C5 H5A OLC sing 405 n n C4 H4 OLC sing 406 n n C4 H4A OLC sing 407 n n C3 H3 OLC sing 408 n n C3 H3A OLC sing 409 n n C2 H2 OLC sing 410 n n C2 H2A OLC sing 411 n n C21 H21 OLC sing 412 n n C21 H21A OLC sing 413 n n C22 H22 OLC sing 414 n n O25 HO25 OLC sing 415 n n O23 HO23 OLC sing 416 n n # _atom_sites.entry_id 6BQH _atom_sites.fract_transf_matrix[1][1] 0.011324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E2J A 1 1201 2 E2J RIT . C 3 OLC A 1 1202 1 OLC OLC . D 3 OLC A 1 1203 2 OLC OLC . E 3 OLC A 1 1204 3 OLC OLC . F 3 OLC A 1 1205 4 OLC OLC . G 3 OLC A 1 1206 5 OLC OLC . H 3 OLC A 1 1207 6 OLC OLC . I 4 PEG A 1 1208 1 PEG PEG . J 5 OLA A 1 1209 1 OLA OLA . K 5 OLA A 1 1210 2 OLA OLA . L 6 HOH A 1 1301 3 HOH HOH . L 6 HOH A 2 1302 1 HOH HOH . L 6 HOH A 3 1303 4 HOH HOH . L 6 HOH A 4 1304 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . D 3 32.45 62.829 63.498 1 116.76 ? C24 OLC 1203 A 1 HETATM 2 C C6 OLC . . . D 3 33.603 61.901 52.519 1 95.57 ? C6 OLC 1203 A 1 HETATM 3 C C5 OLC . . . D 3 33.717 61.24 53.884 1 104.91 ? C5 OLC 1203 A 1 HETATM 4 C C4 OLC . . . D 3 33.899 62.211 55.044 1 98.57 ? C4 OLC 1203 A 1 HETATM 5 C C3 OLC . . . D 3 33.865 61.543 56.411 1 86.32 ? C3 OLC 1203 A 1 HETATM 6 C C2 OLC . . . D 3 33.787 62.527 57.571 1 95.23 ? C2 OLC 1203 A 1 HETATM 7 C C21 OLC . . . D 3 32.618 62.236 61.065 1 122.8 ? C21 OLC 1203 A 1 HETATM 8 C C1 OLC . . . D 3 33.201 61.895 58.801 1 115.98 ? C1 OLC 1203 A 1 HETATM 9 C C22 OLC . . . D 3 32.883 63.279 62.122 1 125.81 ? C22 OLC 1203 A 1 HETATM 10 O O19 OLC . . . D 3 32.735 60.788 58.843 1 122.8 ? O19 OLC 1203 A 1 HETATM 11 O O25 OLC . . . D 3 32.767 63.803 64.483 1 109.03 ? O25 OLC 1203 A 1 HETATM 12 O O23 OLC . . . D 3 34.277 63.597 62.127 1 129.14 ? O23 OLC 1203 A 1 HETATM 13 O O20 OLC . . . D 3 33.241 62.719 59.852 1 115.51 ? O20 OLC 1203 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 490 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 13 #