data_6BQO # _model_server_result.job_id lA079QvU2VN08rqM5orReQ _model_server_result.datetime_utc '2024-12-27 00:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6BQO # _exptl.entry_id 6BQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.39 _cell.angle_gamma 90 _cell.entry_id 6BQO _cell.length_a 114.92 _cell.length_b 39.85 _cell.length_c 109.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -65.674626 0 209.696235 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 77 A GLY 77 1_555 E NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O THR 80 A THR 80 1_555 E NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 E NA NA . A NA 202 1_555 B O GLY 77 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 E NA NA . A NA 202 1_555 B O THR 80 B THR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BQO _atom_sites.fract_transf_matrix[1][1] 0.008702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002725 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 F A 1 201 1 F F . E 4 NA A 1 202 1 NA NA . F 5 OLC B 1 201 1 OLC OLC . G 5 OLC B 1 202 3 OLC OLC . H 3 F B 1 203 2 F F . I 5 OLC C 1 101 2 OLC OLC . J 6 HOH A 1 301 26 HOH HOH . J 6 HOH A 2 302 33 HOH HOH . J 6 HOH A 3 303 3 HOH HOH . J 6 HOH A 4 304 44 HOH HOH . J 6 HOH A 5 305 43 HOH HOH . J 6 HOH A 6 306 25 HOH HOH . J 6 HOH A 7 307 34 HOH HOH . J 6 HOH A 8 308 35 HOH HOH . J 6 HOH A 9 309 46 HOH HOH . K 6 HOH B 1 301 36 HOH HOH . K 6 HOH B 2 302 20 HOH HOH . K 6 HOH B 3 303 1 HOH HOH . K 6 HOH B 4 304 7 HOH HOH . K 6 HOH B 5 305 23 HOH HOH . K 6 HOH B 6 306 24 HOH HOH . K 6 HOH B 7 307 32 HOH HOH . K 6 HOH B 8 308 47 HOH HOH . K 6 HOH B 9 309 4 HOH HOH . K 6 HOH B 10 310 10 HOH HOH . K 6 HOH B 11 311 22 HOH HOH . K 6 HOH B 12 312 45 HOH HOH . L 6 HOH C 1 201 39 HOH HOH . L 6 HOH C 2 202 31 HOH HOH . L 6 HOH C 3 203 38 HOH HOH . L 6 HOH C 4 204 29 HOH HOH . L 6 HOH C 5 205 13 HOH HOH . L 6 HOH C 6 206 17 HOH HOH . L 6 HOH C 7 207 8 HOH HOH . L 6 HOH C 8 208 15 HOH HOH . L 6 HOH C 9 209 48 HOH HOH . L 6 HOH C 10 210 9 HOH HOH . L 6 HOH C 11 211 28 HOH HOH . L 6 HOH C 12 212 40 HOH HOH . L 6 HOH C 13 213 37 HOH HOH . L 6 HOH C 14 214 19 HOH HOH . L 6 HOH C 15 215 21 HOH HOH . L 6 HOH C 16 216 27 HOH HOH . L 6 HOH C 17 217 41 HOH HOH . L 6 HOH C 18 218 6 HOH HOH . L 6 HOH C 19 219 5 HOH HOH . L 6 HOH C 20 220 42 HOH HOH . L 6 HOH C 21 221 30 HOH HOH . L 6 HOH C 22 222 16 HOH HOH . L 6 HOH C 23 223 18 HOH HOH . L 6 HOH C 24 224 12 HOH HOH . L 6 HOH C 25 225 11 HOH HOH . L 6 HOH C 26 226 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -27.447 _atom_site.Cartn_y 7.422 _atom_site.Cartn_z 134.629 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #