data_6BQP # _model_server_result.job_id sIY6iThf2rAu8k22bJacJA _model_server_result.datetime_utc '2024-11-26 16:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6BQP # _exptl.entry_id 6BQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BQP _cell.length_a 49.113 _cell.length_b 77.834 _cell.length_c 78.709 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H29 N5 O2' _chem_comp.formula_weight 443.541 _chem_comp.id 6T2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Crenolanib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C26 6T2 sing 1 n n O2 C24 6T2 sing 2 n n C26 C23 6T2 sing 3 n n C24 C23 6T2 sing 4 n n C23 C5 6T2 sing 5 n n C23 C27 6T2 sing 6 n n C5 O1 6T2 sing 7 n n N80 C50 6T2 sing 8 n n O1 C13 6T2 sing 9 n n C40 C50 6T2 sing 10 n n C40 C30 6T2 sing 11 n n C13 C18 6T2 doub 12 n y C13 C12 6T2 sing 13 n y C18 C19 6T2 sing 14 n y C50 C60 6T2 sing 15 n n C12 C10 6T2 doub 16 n y C19 C9 6T2 doub 17 n y C30 N4 6T2 sing 18 n n C10 C9 6T2 sing 19 n y C10 N2 6T2 sing 20 n y C60 C70 6T2 sing 21 n n C9 N1 6T2 sing 22 n y N4 C70 6T2 sing 23 n n N4 C11 6T2 sing 24 n n N2 C1 6T2 doub 25 n y N1 C1 6T2 sing 26 n y N1 C2 6T2 sing 27 n n N3 C2 6T2 doub 28 n y N3 C7 6T2 sing 29 n y C11 C7 6T2 doub 30 n y C11 C14 6T2 sing 31 n y C2 C3 6T2 sing 32 n y C7 C6 6T2 sing 33 n y C14 C15 6T2 doub 34 n y C3 C4 6T2 doub 35 n y C6 C4 6T2 sing 36 n y C6 C16 6T2 doub 37 n y C15 C16 6T2 sing 38 n y C1 H1 6T2 sing 39 n n C3 H2 6T2 sing 40 n n C4 H3 6T2 sing 41 n n C5 H4 6T2 sing 42 n n C5 H5 6T2 sing 43 n n C12 H6 6T2 sing 44 n n C14 H7 6T2 sing 45 n n C15 H8 6T2 sing 46 n n C30 H9 6T2 sing 47 n n C30 H10 6T2 sing 48 n n C40 H11 6T2 sing 49 n n C40 H12 6T2 sing 50 n n C50 H13 6T2 sing 51 n n N80 H14 6T2 sing 52 n n N80 H15 6T2 sing 53 n n C60 H17 6T2 sing 54 n n C60 H18 6T2 sing 55 n n C70 H19 6T2 sing 56 n n C70 H20 6T2 sing 57 n n C16 H21 6T2 sing 58 n n C19 H22 6T2 sing 59 n n C18 H23 6T2 sing 60 n n C27 H24 6T2 sing 61 n n C27 H25 6T2 sing 62 n n C27 H26 6T2 sing 63 n n C24 H27 6T2 sing 64 n n C24 H28 6T2 sing 65 n n C26 H29 6T2 sing 66 n n C26 H30 6T2 sing 67 n n # _atom_sites.entry_id 6BQP _atom_sites.fract_transf_matrix[1][1] 0.020361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6T2 A 1 501 600 6T2 DRG . C 3 EDO A 1 502 1 EDO EDO . D 4 HOH A 1 601 70 HOH HOH . D 4 HOH A 2 602 37 HOH HOH . D 4 HOH A 3 603 98 HOH HOH . D 4 HOH A 4 604 85 HOH HOH . D 4 HOH A 5 605 67 HOH HOH . D 4 HOH A 6 606 68 HOH HOH . D 4 HOH A 7 607 58 HOH HOH . D 4 HOH A 8 608 81 HOH HOH . D 4 HOH A 9 609 62 HOH HOH . D 4 HOH A 10 610 88 HOH HOH . D 4 HOH A 11 611 45 HOH HOH . D 4 HOH A 12 612 24 HOH HOH . D 4 HOH A 13 613 31 HOH HOH . D 4 HOH A 14 614 38 HOH HOH . D 4 HOH A 15 615 100 HOH HOH . D 4 HOH A 16 616 15 HOH HOH . D 4 HOH A 17 617 74 HOH HOH . D 4 HOH A 18 618 27 HOH HOH . D 4 HOH A 19 619 65 HOH HOH . D 4 HOH A 20 620 64 HOH HOH . D 4 HOH A 21 621 72 HOH HOH . D 4 HOH A 22 622 29 HOH HOH . D 4 HOH A 23 623 33 HOH HOH . D 4 HOH A 24 624 7 HOH HOH . D 4 HOH A 25 625 56 HOH HOH . D 4 HOH A 26 626 22 HOH HOH . D 4 HOH A 27 627 99 HOH HOH . D 4 HOH A 28 628 97 HOH HOH . D 4 HOH A 29 629 20 HOH HOH . D 4 HOH A 30 630 42 HOH HOH . D 4 HOH A 31 631 40 HOH HOH . D 4 HOH A 32 632 87 HOH HOH . D 4 HOH A 33 633 69 HOH HOH . D 4 HOH A 34 634 78 HOH HOH . D 4 HOH A 35 635 50 HOH HOH . D 4 HOH A 36 636 11 HOH HOH . D 4 HOH A 37 637 94 HOH HOH . D 4 HOH A 38 638 57 HOH HOH . D 4 HOH A 39 639 41 HOH HOH . D 4 HOH A 40 640 8 HOH HOH . D 4 HOH A 41 641 34 HOH HOH . D 4 HOH A 42 642 9 HOH HOH . D 4 HOH A 43 643 73 HOH HOH . D 4 HOH A 44 644 52 HOH HOH . D 4 HOH A 45 645 95 HOH HOH . D 4 HOH A 46 646 32 HOH HOH . D 4 HOH A 47 647 21 HOH HOH . D 4 HOH A 48 648 13 HOH HOH . D 4 HOH A 49 649 60 HOH HOH . D 4 HOH A 50 650 16 HOH HOH . D 4 HOH A 51 651 76 HOH HOH . D 4 HOH A 52 652 82 HOH HOH . D 4 HOH A 53 653 14 HOH HOH . D 4 HOH A 54 654 5 HOH HOH . D 4 HOH A 55 655 25 HOH HOH . D 4 HOH A 56 656 36 HOH HOH . D 4 HOH A 57 657 30 HOH HOH . D 4 HOH A 58 658 63 HOH HOH . D 4 HOH A 59 659 26 HOH HOH . D 4 HOH A 60 660 80 HOH HOH . D 4 HOH A 61 661 43 HOH HOH . D 4 HOH A 62 662 79 HOH HOH . D 4 HOH A 63 663 59 HOH HOH . D 4 HOH A 64 664 35 HOH HOH . D 4 HOH A 65 665 2 HOH HOH . D 4 HOH A 66 666 46 HOH HOH . D 4 HOH A 67 667 77 HOH HOH . D 4 HOH A 68 668 17 HOH HOH . D 4 HOH A 69 669 86 HOH HOH . D 4 HOH A 70 670 75 HOH HOH . D 4 HOH A 71 671 3 HOH HOH . D 4 HOH A 72 672 28 HOH HOH . D 4 HOH A 73 673 48 HOH HOH . D 4 HOH A 74 674 61 HOH HOH . D 4 HOH A 75 675 6 HOH HOH . D 4 HOH A 76 676 92 HOH HOH . D 4 HOH A 77 677 53 HOH HOH . D 4 HOH A 78 678 39 HOH HOH . D 4 HOH A 79 679 83 HOH HOH . D 4 HOH A 80 680 93 HOH HOH . D 4 HOH A 81 681 55 HOH HOH . D 4 HOH A 82 682 4 HOH HOH . D 4 HOH A 83 683 89 HOH HOH . D 4 HOH A 84 684 49 HOH HOH . D 4 HOH A 85 685 44 HOH HOH . D 4 HOH A 86 686 1 HOH HOH . D 4 HOH A 87 687 71 HOH HOH . D 4 HOH A 88 688 66 HOH HOH . D 4 HOH A 89 689 90 HOH HOH . D 4 HOH A 90 690 51 HOH HOH . D 4 HOH A 91 691 18 HOH HOH . D 4 HOH A 92 692 91 HOH HOH . D 4 HOH A 93 693 47 HOH HOH . D 4 HOH A 94 694 19 HOH HOH . D 4 HOH A 95 695 84 HOH HOH . D 4 HOH A 96 696 23 HOH HOH . D 4 HOH A 97 697 54 HOH HOH . D 4 HOH A 98 698 96 HOH HOH . D 4 HOH A 99 699 12 HOH HOH . D 4 HOH A 100 700 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6T2 . . . B 2 -3.35 3.42 23.221 1 27.03 ? C1 6T2 501 A 1 HETATM 2 C C2 6T2 . . . B 2 -2.019 5.314 24.119 1 27.59 ? C2 6T2 501 A 1 HETATM 3 C C3 6T2 . . . B 2 -3.132 6.101 24.412 1 30.26 ? C3 6T2 501 A 1 HETATM 4 C C4 6T2 . . . B 2 -2.951 7.365 24.885 1 29.55 ? C4 6T2 501 A 1 HETATM 5 C C5 6T2 . . . B 2 0.131 -1.865 23.548 1 41.24 ? C5 6T2 501 A 1 HETATM 6 C C6 6T2 . . . B 2 -1.655 7.869 25.041 1 29.55 ? C6 6T2 501 A 1 HETATM 7 C C7 6T2 . . . B 2 -0.571 7.03 24.704 1 28.03 ? C7 6T2 501 A 1 HETATM 8 C C9 6T2 . . . B 2 -1.248 2.941 23.755 1 27.39 ? C9 6T2 501 A 1 HETATM 9 C C10 6T2 . . . B 2 -1.908 1.818 23.273 1 28.24 ? C10 6T2 501 A 1 HETATM 10 C C11 6T2 . . . B 2 0.749 7.517 24.866 1 29.67 ? C11 6T2 501 A 1 HETATM 11 C C12 6T2 . . . B 2 -1.237 0.597 23.165 1 31.05 ? C12 6T2 501 A 1 HETATM 12 C C13 6T2 . . . B 2 0.08 0.541 23.573 1 31.02 ? C13 6T2 501 A 1 HETATM 13 C C14 6T2 . . . B 2 0.936 8.823 25.316 1 30.98 ? C14 6T2 501 A 1 HETATM 14 C C15 6T2 . . . B 2 -0.154 9.634 25.655 1 27.17 ? C15 6T2 501 A 1 HETATM 15 C C30 6T2 . . . B 2 3.157 6.938 25.092 1 31.09 ? C30 6T2 501 A 1 HETATM 16 C C40 6T2 . . . B 2 4.137 5.827 24.804 1 32.34 ? C40 6T2 501 A 1 HETATM 17 C C50 6T2 . . . B 2 4.239 5.556 23.321 1 31.47 ? C50 6T2 501 A 1 HETATM 18 N N80 6T2 . . . B 2 5.262 4.54 23.016 1 31.53 ? N80 6T2 501 A 1 HETATM 19 C C60 6T2 . . . B 2 2.886 5.137 22.814 1 30.39 ? C60 6T2 501 A 1 HETATM 20 C C70 6T2 . . . B 2 1.867 6.228 23.054 1 32.71 ? C70 6T2 501 A 1 HETATM 21 N N4 6T2 . . . B 2 1.851 6.789 24.436 1 31.24 ? N4 6T2 501 A 1 HETATM 22 N N3 6T2 . . . B 2 -0.792 5.761 24.247 1 29.28 ? N3 6T2 501 A 1 HETATM 23 C C16 6T2 . . . B 2 -1.423 9.179 25.51 1 29 ? C16 6T2 501 A 1 HETATM 24 N N1 6T2 . . . B 2 -2.184 3.968 23.696 1 26.88 ? N1 6T2 501 A 1 HETATM 25 N N2 6T2 . . . B 2 -3.214 2.148 22.941 1 29.9 ? N2 6T2 501 A 1 HETATM 26 C C19 6T2 . . . B 2 0.083 2.896 24.145 1 31.57 ? C19 6T2 501 A 1 HETATM 27 C C18 6T2 . . . B 2 0.734 1.685 24.06 1 30.89 ? C18 6T2 501 A 1 HETATM 28 O O1 6T2 . . . B 2 0.828 -0.609 23.523 1 34.81 ? O1 6T2 501 A 1 HETATM 29 C C23 6T2 . . . B 2 1.103 -2.952 23.921 1 45.9 ? C23 6T2 501 A 1 HETATM 30 C C27 6T2 . . . B 2 1.144 -3.179 25.421 1 44.63 ? C27 6T2 501 A 1 HETATM 31 C C24 6T2 . . . B 2 0.962 -4.256 23.123 1 50.18 ? C24 6T2 501 A 1 HETATM 32 O O2 6T2 . . . B 2 2.141 -3.913 22.339 1 54.13 ? O2 6T2 501 A 1 HETATM 33 C C26 6T2 . . . B 2 2.497 -2.866 23.278 1 48.52 ? C26 6T2 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #