data_6BQT # _model_server_result.job_id Mmn58_jP01y16h-up0Hm-Q _model_server_result.datetime_utc '2024-12-26 10:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":302}' # _entry.id 6BQT # _exptl.entry_id 6BQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.16 _cell.angle_beta 92.98 _cell.angle_gamma 115.98 _cell.entry_id 6BQT _cell.length_a 61.103 _cell.length_b 69.572 _cell.length_c 150.473 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,O,P,Q,R,S,DA,EA,FA 1 1 D,E,F,T,U,V,W,X,GA,HA,IA 2 1 G,H,I,Y,Z,AA,JA,KA,LA 3 1 J,K,L,BA,CA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 Y N N ? 4 Z N N ? 4 BA N N ? 4 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASN 5 C ASN 339 1_555 C N TPO 6 C TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 C C TPO 6 C TPO 340 1_555 C N LEU 7 C LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 C C LYS 25 C LYS 359 1_555 C N TPO 26 C TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C TPO 26 C TPO 360 1_555 C N LEU 27 C LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 F C ASN 5 F ASN 339 1_555 F N TPO 6 F TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 F C TPO 6 F TPO 340 1_555 F N LEU 7 F LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 F C LYS 25 F LYS 359 1_555 F N TPO 26 F TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 F C TPO 26 F TPO 360 1_555 F N LEU 27 F LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 I C ASN 5 I ASN 339 1_555 I N TPO 6 I TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 I C TPO 6 I TPO 340 1_555 I N LEU 7 I LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 I C LYS 25 I LYS 359 1_555 I N TPO 26 I TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 I C TPO 26 I TPO 360 1_555 I N LEU 27 I LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 L C ASN 5 L ASN 339 1_555 L N TPO 6 L TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 L C TPO 6 L TPO 340 1_555 L N LEU 7 L LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 L C LYS 25 L LYS 359 1_555 L N TPO 26 L TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 L C TPO 26 L TPO 360 1_555 L N LEU 27 L LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6BQT _atom_sites.fract_transf_matrix[1][1] 0.016366 _atom_sites.fract_transf_matrix[1][2] 0.007974 _atom_sites.fract_transf_matrix[1][3] 0.002522 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015989 _atom_sites.fract_transf_matrix[2][3] 0.003309 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 PE4 A 1 301 300 PE4 PE4 . N 4 1PE A 1 302 301 1PE 1PE . O 4 1PE A 1 303 303 1PE 1PE . P 5 EDO B 1 301 302 EDO EDO . Q 4 1PE B 1 302 300 1PE 1PE . R 6 PG4 B 1 303 301 PG4 PG4 . S 7 GOL B 1 304 302 GOL GOL . T 6 PG4 D 1 300 300 PG4 PG4 . U 5 EDO D 1 301 301 EDO EDO . V 6 PG4 E 1 300 300 PG4 PG4 . W 8 PGE E 1 301 301 PGE PGE . X 9 PEG E 1 302 302 PEG PEG . Y 4 1PE G 1 300 300 1PE 1PE . Z 4 1PE H 1 300 300 1PE 1PE . AA 7 GOL I 1 401 301 GOL GOL . BA 4 1PE J 1 300 300 1PE 1PE . CA 4 1PE J 1 301 301 1PE 1PE . DA 10 HOH A 1 401 22 HOH HOH . DA 10 HOH A 2 402 80 HOH HOH . DA 10 HOH A 3 403 36 HOH HOH . DA 10 HOH A 4 404 81 HOH HOH . DA 10 HOH A 5 405 54 HOH HOH . DA 10 HOH A 6 406 9 HOH HOH . DA 10 HOH A 7 407 20 HOH HOH . DA 10 HOH A 8 408 118 HOH HOH . DA 10 HOH A 9 409 72 HOH HOH . DA 10 HOH A 10 410 5 HOH HOH . DA 10 HOH A 11 411 7 HOH HOH . DA 10 HOH A 12 412 35 HOH HOH . DA 10 HOH A 13 413 100 HOH HOH . DA 10 HOH A 14 414 94 HOH HOH . DA 10 HOH A 15 415 64 HOH HOH . DA 10 HOH A 16 416 34 HOH HOH . DA 10 HOH A 17 417 99 HOH HOH . EA 10 HOH B 1 401 10 HOH HOH . EA 10 HOH B 2 402 126 HOH HOH . EA 10 HOH B 3 403 65 HOH HOH . EA 10 HOH B 4 404 13 HOH HOH . EA 10 HOH B 5 405 15 HOH HOH . EA 10 HOH B 6 406 84 HOH HOH . EA 10 HOH B 7 407 49 HOH HOH . EA 10 HOH B 8 408 21 HOH HOH . EA 10 HOH B 9 409 53 HOH HOH . EA 10 HOH B 10 410 104 HOH HOH . EA 10 HOH B 11 411 8 HOH HOH . EA 10 HOH B 12 412 85 HOH HOH . EA 10 HOH B 13 413 103 HOH HOH . EA 10 HOH B 14 414 97 HOH HOH . EA 10 HOH B 15 415 4 HOH HOH . EA 10 HOH B 16 416 106 HOH HOH . EA 10 HOH B 17 417 83 HOH HOH . EA 10 HOH B 18 418 109 HOH HOH . EA 10 HOH B 19 419 86 HOH HOH . EA 10 HOH B 20 420 130 HOH HOH . EA 10 HOH B 21 421 44 HOH HOH . FA 10 HOH C 1 401 32 HOH HOH . FA 10 HOH C 2 402 121 HOH HOH . FA 10 HOH C 3 403 110 HOH HOH . FA 10 HOH C 4 404 95 HOH HOH . FA 10 HOH C 5 405 48 HOH HOH . GA 10 HOH D 1 401 131 HOH HOH . GA 10 HOH D 2 402 3 HOH HOH . GA 10 HOH D 3 403 119 HOH HOH . GA 10 HOH D 4 404 6 HOH HOH . GA 10 HOH D 5 405 52 HOH HOH . GA 10 HOH D 6 406 55 HOH HOH . GA 10 HOH D 7 407 76 HOH HOH . GA 10 HOH D 8 408 87 HOH HOH . GA 10 HOH D 9 409 67 HOH HOH . GA 10 HOH D 10 410 125 HOH HOH . HA 10 HOH E 1 401 27 HOH HOH . HA 10 HOH E 2 402 105 HOH HOH . HA 10 HOH E 3 403 16 HOH HOH . HA 10 HOH E 4 404 90 HOH HOH . HA 10 HOH E 5 405 39 HOH HOH . HA 10 HOH E 6 406 31 HOH HOH . HA 10 HOH E 7 407 12 HOH HOH . HA 10 HOH E 8 408 42 HOH HOH . HA 10 HOH E 9 409 37 HOH HOH . HA 10 HOH E 10 410 92 HOH HOH . HA 10 HOH E 11 411 26 HOH HOH . HA 10 HOH E 12 412 120 HOH HOH . IA 10 HOH F 1 401 127 HOH HOH . IA 10 HOH F 2 402 128 HOH HOH . IA 10 HOH F 3 403 1 HOH HOH . IA 10 HOH F 4 404 123 HOH HOH . IA 10 HOH F 5 405 47 HOH HOH . IA 10 HOH F 6 406 122 HOH HOH . IA 10 HOH F 7 407 124 HOH HOH . IA 10 HOH F 8 408 46 HOH HOH . JA 10 HOH G 1 401 112 HOH HOH . JA 10 HOH G 2 402 28 HOH HOH . JA 10 HOH G 3 403 73 HOH HOH . JA 10 HOH G 4 404 132 HOH HOH . JA 10 HOH G 5 405 66 HOH HOH . JA 10 HOH G 6 406 59 HOH HOH . JA 10 HOH G 7 407 88 HOH HOH . KA 10 HOH H 1 401 77 HOH HOH . KA 10 HOH H 2 402 60 HOH HOH . KA 10 HOH H 3 403 116 HOH HOH . KA 10 HOH H 4 404 113 HOH HOH . LA 10 HOH I 1 501 50 HOH HOH . LA 10 HOH I 2 502 51 HOH HOH . LA 10 HOH I 3 503 111 HOH HOH . MA 10 HOH J 1 401 115 HOH HOH . MA 10 HOH J 2 402 29 HOH HOH . MA 10 HOH J 3 403 129 HOH HOH . MA 10 HOH J 4 404 101 HOH HOH . MA 10 HOH J 5 405 102 HOH HOH . MA 10 HOH J 6 406 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . Q 4 9.305 -8.623 17.084 1 19.4 ? OH2 1PE 302 B 1 HETATM 2 C C12 1PE . . . Q 4 8.561 -8.824 18.255 1 27.05 ? C12 1PE 302 B 1 HETATM 3 C C22 1PE . . . Q 4 7.182 -9.375 17.893 1 31.68 ? C22 1PE 302 B 1 HETATM 4 O OH3 1PE . . . Q 4 6.362 -8.358 17.385 1 32.57 ? OH3 1PE 302 B 1 HETATM 5 C C13 1PE . . . Q 4 4.616 -6.746 17.667 1 44.82 ? C13 1PE 302 B 1 HETATM 6 C C23 1PE . . . Q 4 5.666 -7.621 18.353 1 39.17 ? C23 1PE 302 B 1 HETATM 7 O OH4 1PE . . . Q 4 5.216 -5.647 17.035 1 45.95 ? OH4 1PE 302 B 1 HETATM 8 C C14 1PE . . . Q 4 5.226 -3.314 16.46 1 42.05 ? C14 1PE 302 B 1 HETATM 9 C C24 1PE . . . Q 4 4.423 -4.49 17.016 1 44.65 ? C24 1PE 302 B 1 HETATM 10 O OH5 1PE . . . Q 4 6.56 -3.413 16.872 1 34.23 ? OH5 1PE 302 B 1 HETATM 11 C C15 1PE . . . Q 4 8.191 -1.81 17.559 1 37.31 ? C15 1PE 302 B 1 HETATM 12 C C25 1PE . . . Q 4 7.384 -2.387 16.398 1 29.34 ? C25 1PE 302 B 1 HETATM 13 O OH6 1PE . . . Q 4 8.616 -2.843 18.403 1 40.55 ? OH6 1PE 302 B 1 HETATM 14 C C16 1PE . . . Q 4 9.128 -3.711 20.561 1 41.35 ? C16 1PE 302 B 1 HETATM 15 C C26 1PE . . . Q 4 8.634 -2.507 19.761 1 38.71 ? C26 1PE 302 B 1 HETATM 16 O OH7 1PE . . . Q 4 8.052 -4.559 20.845 1 36.94 ? OH7 1PE 302 B 1 HETATM 17 H HO2 1PE . . . Q 4 10.106 -8.426 17.288 1 23.28 ? HO2 1PE 302 B 1 HETATM 18 H H121 1PE . . . Q 4 9.023 -9.458 18.826 1 32.46 ? H121 1PE 302 B 1 HETATM 19 H H122 1PE . . . Q 4 8.46 -7.981 18.723 1 32.46 ? H122 1PE 302 B 1 HETATM 20 H H221 1PE . . . Q 4 7.28 -10.07 17.224 1 38.02 ? H221 1PE 302 B 1 HETATM 21 H H222 1PE . . . Q 4 6.77 -9.751 18.687 1 38.02 ? H222 1PE 302 B 1 HETATM 22 H H131 1PE . . . Q 4 4.143 -7.275 17.005 1 53.78 ? H131 1PE 302 B 1 HETATM 23 H H132 1PE . . . Q 4 3.984 -6.427 18.33 1 53.78 ? H132 1PE 302 B 1 HETATM 24 H H231 1PE . . . Q 4 6.288 -7.058 18.84 1 47 ? H231 1PE 302 B 1 HETATM 25 H H232 1PE . . . Q 4 5.228 -8.228 18.969 1 47 ? H232 1PE 302 B 1 HETATM 26 H H141 1PE . . . Q 4 4.849 -2.483 16.786 1 50.46 ? H141 1PE 302 B 1 HETATM 27 H H142 1PE . . . Q 4 5.187 -3.327 15.49 1 50.46 ? H142 1PE 302 B 1 HETATM 28 H H241 1PE . . . Q 4 4.133 -4.283 17.918 1 53.58 ? H241 1PE 302 B 1 HETATM 29 H H242 1PE . . . Q 4 3.646 -4.642 16.456 1 53.58 ? H242 1PE 302 B 1 HETATM 30 H H151 1PE . . . Q 4 8.965 -1.34 17.211 1 44.77 ? H151 1PE 302 B 1 HETATM 31 H H152 1PE . . . Q 4 7.638 -1.192 18.06 1 44.77 ? H152 1PE 302 B 1 HETATM 32 H H251 1PE . . . Q 4 6.837 -1.688 16.005 1 35.21 ? H251 1PE 302 B 1 HETATM 33 H H252 1PE . . . Q 4 7.988 -2.74 15.727 1 35.21 ? H252 1PE 302 B 1 HETATM 34 H H161 1PE . . . Q 4 9.791 -4.193 20.043 1 49.62 ? H161 1PE 302 B 1 HETATM 35 H H162 1PE . . . Q 4 9.526 -3.405 21.391 1 49.62 ? H162 1PE 302 B 1 HETATM 36 H H261 1PE . . . Q 4 7.739 -2.27 20.049 1 46.45 ? H261 1PE 302 B 1 HETATM 37 H H262 1PE . . . Q 4 9.231 -1.756 19.902 1 46.45 ? H262 1PE 302 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #