data_6BQT # _model_server_result.job_id -gx1ujtJA7CYi3-FQ_CuuQ _model_server_result.datetime_utc '2024-12-26 10:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":401}' # _entry.id 6BQT # _exptl.entry_id 6BQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.16 _cell.angle_beta 92.98 _cell.angle_gamma 115.98 _cell.entry_id 6BQT _cell.length_a 61.103 _cell.length_b 69.572 _cell.length_c 150.473 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,O,P,Q,R,S,DA,EA,FA 1 1 D,E,F,T,U,V,W,X,GA,HA,IA 2 1 G,H,I,Y,Z,AA,JA,KA,LA 3 1 J,K,L,BA,CA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 S N N ? 7 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASN 5 C ASN 339 1_555 C N TPO 6 C TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 C C TPO 6 C TPO 340 1_555 C N LEU 7 C LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 C C LYS 25 C LYS 359 1_555 C N TPO 26 C TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C TPO 26 C TPO 360 1_555 C N LEU 27 C LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 F C ASN 5 F ASN 339 1_555 F N TPO 6 F TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 F C TPO 6 F TPO 340 1_555 F N LEU 7 F LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 F C LYS 25 F LYS 359 1_555 F N TPO 26 F TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 F C TPO 26 F TPO 360 1_555 F N LEU 27 F LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 I C ASN 5 I ASN 339 1_555 I N TPO 6 I TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 I C TPO 6 I TPO 340 1_555 I N LEU 7 I LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 I C LYS 25 I LYS 359 1_555 I N TPO 26 I TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 I C TPO 26 I TPO 360 1_555 I N LEU 27 I LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 L C ASN 5 L ASN 339 1_555 L N TPO 6 L TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 L C TPO 6 L TPO 340 1_555 L N LEU 7 L LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 L C LYS 25 L LYS 359 1_555 L N TPO 26 L TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 L C TPO 26 L TPO 360 1_555 L N LEU 27 L LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 6BQT _atom_sites.fract_transf_matrix[1][1] 0.016366 _atom_sites.fract_transf_matrix[1][2] 0.007974 _atom_sites.fract_transf_matrix[1][3] 0.002522 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015989 _atom_sites.fract_transf_matrix[2][3] 0.003309 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 PE4 A 1 301 300 PE4 PE4 . N 4 1PE A 1 302 301 1PE 1PE . O 4 1PE A 1 303 303 1PE 1PE . P 5 EDO B 1 301 302 EDO EDO . Q 4 1PE B 1 302 300 1PE 1PE . R 6 PG4 B 1 303 301 PG4 PG4 . S 7 GOL B 1 304 302 GOL GOL . T 6 PG4 D 1 300 300 PG4 PG4 . U 5 EDO D 1 301 301 EDO EDO . V 6 PG4 E 1 300 300 PG4 PG4 . W 8 PGE E 1 301 301 PGE PGE . X 9 PEG E 1 302 302 PEG PEG . Y 4 1PE G 1 300 300 1PE 1PE . Z 4 1PE H 1 300 300 1PE 1PE . AA 7 GOL I 1 401 301 GOL GOL . BA 4 1PE J 1 300 300 1PE 1PE . CA 4 1PE J 1 301 301 1PE 1PE . DA 10 HOH A 1 401 22 HOH HOH . DA 10 HOH A 2 402 80 HOH HOH . DA 10 HOH A 3 403 36 HOH HOH . DA 10 HOH A 4 404 81 HOH HOH . DA 10 HOH A 5 405 54 HOH HOH . DA 10 HOH A 6 406 9 HOH HOH . DA 10 HOH A 7 407 20 HOH HOH . DA 10 HOH A 8 408 118 HOH HOH . DA 10 HOH A 9 409 72 HOH HOH . DA 10 HOH A 10 410 5 HOH HOH . DA 10 HOH A 11 411 7 HOH HOH . DA 10 HOH A 12 412 35 HOH HOH . DA 10 HOH A 13 413 100 HOH HOH . DA 10 HOH A 14 414 94 HOH HOH . DA 10 HOH A 15 415 64 HOH HOH . DA 10 HOH A 16 416 34 HOH HOH . DA 10 HOH A 17 417 99 HOH HOH . EA 10 HOH B 1 401 10 HOH HOH . EA 10 HOH B 2 402 126 HOH HOH . EA 10 HOH B 3 403 65 HOH HOH . EA 10 HOH B 4 404 13 HOH HOH . EA 10 HOH B 5 405 15 HOH HOH . EA 10 HOH B 6 406 84 HOH HOH . EA 10 HOH B 7 407 49 HOH HOH . EA 10 HOH B 8 408 21 HOH HOH . EA 10 HOH B 9 409 53 HOH HOH . EA 10 HOH B 10 410 104 HOH HOH . EA 10 HOH B 11 411 8 HOH HOH . EA 10 HOH B 12 412 85 HOH HOH . EA 10 HOH B 13 413 103 HOH HOH . EA 10 HOH B 14 414 97 HOH HOH . EA 10 HOH B 15 415 4 HOH HOH . EA 10 HOH B 16 416 106 HOH HOH . EA 10 HOH B 17 417 83 HOH HOH . EA 10 HOH B 18 418 109 HOH HOH . EA 10 HOH B 19 419 86 HOH HOH . EA 10 HOH B 20 420 130 HOH HOH . EA 10 HOH B 21 421 44 HOH HOH . FA 10 HOH C 1 401 32 HOH HOH . FA 10 HOH C 2 402 121 HOH HOH . FA 10 HOH C 3 403 110 HOH HOH . FA 10 HOH C 4 404 95 HOH HOH . FA 10 HOH C 5 405 48 HOH HOH . GA 10 HOH D 1 401 131 HOH HOH . GA 10 HOH D 2 402 3 HOH HOH . GA 10 HOH D 3 403 119 HOH HOH . GA 10 HOH D 4 404 6 HOH HOH . GA 10 HOH D 5 405 52 HOH HOH . GA 10 HOH D 6 406 55 HOH HOH . GA 10 HOH D 7 407 76 HOH HOH . GA 10 HOH D 8 408 87 HOH HOH . GA 10 HOH D 9 409 67 HOH HOH . GA 10 HOH D 10 410 125 HOH HOH . HA 10 HOH E 1 401 27 HOH HOH . HA 10 HOH E 2 402 105 HOH HOH . HA 10 HOH E 3 403 16 HOH HOH . HA 10 HOH E 4 404 90 HOH HOH . HA 10 HOH E 5 405 39 HOH HOH . HA 10 HOH E 6 406 31 HOH HOH . HA 10 HOH E 7 407 12 HOH HOH . HA 10 HOH E 8 408 42 HOH HOH . HA 10 HOH E 9 409 37 HOH HOH . HA 10 HOH E 10 410 92 HOH HOH . HA 10 HOH E 11 411 26 HOH HOH . HA 10 HOH E 12 412 120 HOH HOH . IA 10 HOH F 1 401 127 HOH HOH . IA 10 HOH F 2 402 128 HOH HOH . IA 10 HOH F 3 403 1 HOH HOH . IA 10 HOH F 4 404 123 HOH HOH . IA 10 HOH F 5 405 47 HOH HOH . IA 10 HOH F 6 406 122 HOH HOH . IA 10 HOH F 7 407 124 HOH HOH . IA 10 HOH F 8 408 46 HOH HOH . JA 10 HOH G 1 401 112 HOH HOH . JA 10 HOH G 2 402 28 HOH HOH . JA 10 HOH G 3 403 73 HOH HOH . JA 10 HOH G 4 404 132 HOH HOH . JA 10 HOH G 5 405 66 HOH HOH . JA 10 HOH G 6 406 59 HOH HOH . JA 10 HOH G 7 407 88 HOH HOH . KA 10 HOH H 1 401 77 HOH HOH . KA 10 HOH H 2 402 60 HOH HOH . KA 10 HOH H 3 403 116 HOH HOH . KA 10 HOH H 4 404 113 HOH HOH . LA 10 HOH I 1 501 50 HOH HOH . LA 10 HOH I 2 502 51 HOH HOH . LA 10 HOH I 3 503 111 HOH HOH . MA 10 HOH J 1 401 115 HOH HOH . MA 10 HOH J 2 402 29 HOH HOH . MA 10 HOH J 3 403 129 HOH HOH . MA 10 HOH J 4 404 101 HOH HOH . MA 10 HOH J 5 405 102 HOH HOH . MA 10 HOH J 6 406 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . AA 7 31.99 8.435 -27.717 1 54.17 ? C1 GOL 401 I 1 HETATM 2 O O1 GOL . . . AA 7 30.822 8.006 -28.344 1 50.62 ? O1 GOL 401 I 1 HETATM 3 C C2 GOL . . . AA 7 32.416 9.749 -28.417 1 56.66 ? C2 GOL 401 I 1 HETATM 4 O O2 GOL . . . AA 7 31.389 10.688 -28.44 1 56.97 ? O2 GOL 401 I 1 HETATM 5 C C3 GOL . . . AA 7 33.648 10.239 -27.62 1 54.26 ? C3 GOL 401 I 1 HETATM 6 O O3 GOL . . . AA 7 33.953 11.517 -28.089 1 41.51 ? O3 GOL 401 I 1 HETATM 7 H H11 GOL . . . AA 7 32.71 7.788 -27.776 1 65 ? H11 GOL 401 I 1 HETATM 8 H H12 GOL . . . AA 7 31.851 8.594 -26.771 1 65 ? H12 GOL 401 I 1 HETATM 9 H HO1 GOL . . . AA 7 30.313 8.685 -28.399 1 60.74 ? HO1 GOL 401 I 1 HETATM 10 H H2 GOL . . . AA 7 32.646 9.583 -29.345 1 67.99 ? H2 GOL 401 I 1 HETATM 11 H HO2 GOL . . . AA 7 31.737 11.459 -28.355 1 68.36 ? HO2 GOL 401 I 1 HETATM 12 H H31 GOL . . . AA 7 34.371 9.6 -27.722 1 65.11 ? H31 GOL 401 I 1 HETATM 13 H H32 GOL . . . AA 7 33.441 10.241 -26.672 1 65.11 ? H32 GOL 401 I 1 HETATM 14 H HO3 GOL . . . AA 7 34.596 11.805 -27.613 1 49.81 ? HO3 GOL 401 I 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #