data_6BR2 # _model_server_result.job_id Qkruas8cedG0-YXiqddKQA _model_server_result.datetime_utc '2025-01-10 23:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6BR2 # _exptl.entry_id 6BR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BR2 _cell.length_a 99.842 _cell.length_b 99.842 _cell.length_c 125.484 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 303 n n C1 H11 MPD sing 304 n n C1 H12 MPD sing 305 n n C1 H13 MPD sing 306 n n C2 O2 MPD sing 307 n n C2 CM MPD sing 308 n n C2 C3 MPD sing 309 n n O2 HO2 MPD sing 310 n n CM HM1 MPD sing 311 n n CM HM2 MPD sing 312 n n CM HM3 MPD sing 313 n n C3 C4 MPD sing 314 n n C3 H31 MPD sing 315 n n C3 H32 MPD sing 316 n n C4 O4 MPD sing 317 n n C4 C5 MPD sing 318 n n C4 H4 MPD sing 319 n n O4 HO4 MPD sing 320 n n C5 H51 MPD sing 321 n n C5 H52 MPD sing 322 n n C5 H53 MPD sing 323 n n # _atom_sites.entry_id 6BR2 _atom_sites.fract_transf_matrix[1][1] 0.010016 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 501 599 MPD MPD . D 3 E3S A 1 502 600 E3S LIG . E 2 MPD B 1 501 599 MPD MPD . F 3 E3S B 1 502 600 E3S LIG . G 4 HOH A 1 601 602 HOH HOH . G 4 HOH A 2 602 603 HOH HOH . G 4 HOH A 3 603 601 HOH HOH . G 4 HOH A 4 604 618 HOH HOH . G 4 HOH A 5 605 604 HOH HOH . G 4 HOH A 6 606 617 HOH HOH . G 4 HOH A 7 607 620 HOH HOH . G 4 HOH A 8 608 619 HOH HOH . H 4 HOH B 1 601 610 HOH HOH . H 4 HOH B 2 602 608 HOH HOH . H 4 HOH B 3 603 613 HOH HOH . H 4 HOH B 4 604 612 HOH HOH . H 4 HOH B 5 605 611 HOH HOH . H 4 HOH B 6 606 606 HOH HOH . H 4 HOH B 7 607 607 HOH HOH . H 4 HOH B 8 608 614 HOH HOH . H 4 HOH B 9 609 615 HOH HOH . H 4 HOH B 10 610 616 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 1.531 -20.643 4.89 1 136.5 ? C1 MPD 501 A 1 HETATM 2 C C2 MPD . . . C 2 2.622 -20.87 5.923 1 139.77 ? C2 MPD 501 A 1 HETATM 3 O O2 MPD . . . C 2 3.745 -21.502 5.288 1 128.89 ? O2 MPD 501 A 1 HETATM 4 C CM MPD . . . C 2 3.01 -19.484 6.452 1 140.53 ? CM MPD 501 A 1 HETATM 5 C C3 MPD . . . C 2 2.083 -21.847 6.984 1 140.07 ? C3 MPD 501 A 1 HETATM 6 C C4 MPD . . . C 2 2.784 -21.883 8.352 1 150.17 ? C4 MPD 501 A 1 HETATM 7 O O4 MPD . . . C 2 1.883 -22.457 9.31 1 143.02 ? O4 MPD 501 A 1 HETATM 8 C C5 MPD . . . C 2 4.122 -22.633 8.36 1 144.41 ? C5 MPD 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #