data_6BR6 # _model_server_result.job_id j3gjttgtYXqnJCxu8Y8O6w _model_server_result.datetime_utc '2024-10-19 13:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":509}' # _entry.id 6BR6 # _exptl.entry_id 6BR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR6 _cell.length_a 108.457 _cell.length_b 108.457 _cell.length_c 70.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall 'P 4ab 2ab' _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 108.457 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 54.2285 54.2285 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -54.2285 54.2285 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 502 NAG 2 n B NAG 2 B 2 NAG A 503 NAG 2 n B BMA 3 B 3 BMA A 504 BMA 2 n B MAN 4 B 4 MAN A 505 MAN 2 n B MAN 5 B 5 MAN A 506 MAN 2 n B MAN 6 B 6 MAN A 507 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 92 1_555 A SG CYS 335 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 42 A CYS 124 1_555 A SG CYS 47 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 93 A CYS 175 1_555 A SG CYS 111 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 101 A CYS 183 1_555 A SG CYS 148 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 150 A CYS 232 1_555 A SG CYS 155 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 A SG CYS 196 A CYS 278 1_555 A SG CYS 209 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf7 A SG CYS 198 A CYS 280 1_555 A SG CYS 207 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 236 A CYS 318 1_555 A SG CYS 255 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 A SG CYS 339 A CYS 421 1_555 A SG CYS 365 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? covale ? covale1 A ND2 ASN 64 A ASN 146 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 118 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A O ASP 211 A ASP 293 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O GLY 215 A GLY 297 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A OD2 ASP 242 A ASP 324 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A NE2 HIS 254 A HIS 336 1_555 D NI NI . A NI 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A NE2 HIS 254 A HIS 336 1_555 D NI NI . A NI 508 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 A O GLY 263 A GLY 345 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 A O HIS 265 A HIS 347 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 E CA CA . A CA 509 1_555 H O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BR6 _atom_sites.fract_transf_matrix[1][1] 0.00922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 501 501 NAG NAG . D 4 NI A 1 508 508 NI NI . E 5 CA A 1 509 509 CA CA . F 6 GOL A 1 510 510 GOL GOL . G 7 E3M A 1 511 601 E3M GYA . H 8 HOH A 1 601 812 HOH HOH . H 8 HOH A 2 602 801 HOH HOH . H 8 HOH A 3 603 876 HOH HOH . H 8 HOH A 4 604 702 HOH HOH . H 8 HOH A 5 605 776 HOH HOH . H 8 HOH A 6 606 784 HOH HOH . H 8 HOH A 7 607 851 HOH HOH . H 8 HOH A 8 608 721 HOH HOH . H 8 HOH A 9 609 804 HOH HOH . H 8 HOH A 10 610 814 HOH HOH . H 8 HOH A 11 611 791 HOH HOH . H 8 HOH A 12 612 704 HOH HOH . H 8 HOH A 13 613 703 HOH HOH . H 8 HOH A 14 614 731 HOH HOH . H 8 HOH A 15 615 859 HOH HOH . H 8 HOH A 16 616 780 HOH HOH . H 8 HOH A 17 617 874 HOH HOH . H 8 HOH A 18 618 735 HOH HOH . H 8 HOH A 19 619 716 HOH HOH . H 8 HOH A 20 620 845 HOH HOH . H 8 HOH A 21 621 701 HOH HOH . H 8 HOH A 22 622 870 HOH HOH . H 8 HOH A 23 623 793 HOH HOH . H 8 HOH A 24 624 707 HOH HOH . H 8 HOH A 25 625 827 HOH HOH . H 8 HOH A 26 626 749 HOH HOH . H 8 HOH A 27 627 772 HOH HOH . H 8 HOH A 28 628 759 HOH HOH . H 8 HOH A 29 629 751 HOH HOH . H 8 HOH A 30 630 816 HOH HOH . H 8 HOH A 31 631 768 HOH HOH . H 8 HOH A 32 632 719 HOH HOH . H 8 HOH A 33 633 766 HOH HOH . H 8 HOH A 34 634 819 HOH HOH . H 8 HOH A 35 635 852 HOH HOH . H 8 HOH A 36 636 744 HOH HOH . H 8 HOH A 37 637 724 HOH HOH . H 8 HOH A 38 638 720 HOH HOH . H 8 HOH A 39 639 865 HOH HOH . H 8 HOH A 40 640 794 HOH HOH . H 8 HOH A 41 641 745 HOH HOH . H 8 HOH A 42 642 729 HOH HOH . H 8 HOH A 43 643 741 HOH HOH . H 8 HOH A 44 644 800 HOH HOH . H 8 HOH A 45 645 817 HOH HOH . H 8 HOH A 46 646 723 HOH HOH . H 8 HOH A 47 647 739 HOH HOH . H 8 HOH A 48 648 747 HOH HOH . H 8 HOH A 49 649 824 HOH HOH . H 8 HOH A 50 650 769 HOH HOH . H 8 HOH A 51 651 714 HOH HOH . H 8 HOH A 52 652 821 HOH HOH . H 8 HOH A 53 653 755 HOH HOH . H 8 HOH A 54 654 833 HOH HOH . H 8 HOH A 55 655 763 HOH HOH . H 8 HOH A 56 656 869 HOH HOH . H 8 HOH A 57 657 705 HOH HOH . H 8 HOH A 58 658 825 HOH HOH . H 8 HOH A 59 659 732 HOH HOH . H 8 HOH A 60 660 798 HOH HOH . H 8 HOH A 61 661 781 HOH HOH . H 8 HOH A 62 662 778 HOH HOH . H 8 HOH A 63 663 746 HOH HOH . H 8 HOH A 64 664 708 HOH HOH . H 8 HOH A 65 665 858 HOH HOH . H 8 HOH A 66 666 711 HOH HOH . H 8 HOH A 67 667 773 HOH HOH . H 8 HOH A 68 668 764 HOH HOH . H 8 HOH A 69 669 808 HOH HOH . H 8 HOH A 70 670 728 HOH HOH . H 8 HOH A 71 671 706 HOH HOH . H 8 HOH A 72 672 753 HOH HOH . H 8 HOH A 73 673 712 HOH HOH . H 8 HOH A 74 674 709 HOH HOH . H 8 HOH A 75 675 733 HOH HOH . H 8 HOH A 76 676 765 HOH HOH . H 8 HOH A 77 677 839 HOH HOH . H 8 HOH A 78 678 717 HOH HOH . H 8 HOH A 79 679 762 HOH HOH . H 8 HOH A 80 680 805 HOH HOH . H 8 HOH A 81 681 855 HOH HOH . H 8 HOH A 82 682 786 HOH HOH . H 8 HOH A 83 683 809 HOH HOH . H 8 HOH A 84 684 737 HOH HOH . H 8 HOH A 85 685 775 HOH HOH . H 8 HOH A 86 686 757 HOH HOH . H 8 HOH A 87 687 789 HOH HOH . H 8 HOH A 88 688 754 HOH HOH . H 8 HOH A 89 689 836 HOH HOH . H 8 HOH A 90 690 742 HOH HOH . H 8 HOH A 91 691 828 HOH HOH . H 8 HOH A 92 692 713 HOH HOH . H 8 HOH A 93 693 818 HOH HOH . H 8 HOH A 94 694 807 HOH HOH . H 8 HOH A 95 695 872 HOH HOH . H 8 HOH A 96 696 838 HOH HOH . H 8 HOH A 97 697 875 HOH HOH . H 8 HOH A 98 698 792 HOH HOH . H 8 HOH A 99 699 777 HOH HOH . H 8 HOH A 100 700 725 HOH HOH . H 8 HOH A 101 701 790 HOH HOH . H 8 HOH A 102 702 761 HOH HOH . H 8 HOH A 103 703 788 HOH HOH . H 8 HOH A 104 704 752 HOH HOH . H 8 HOH A 105 705 849 HOH HOH . H 8 HOH A 106 706 748 HOH HOH . H 8 HOH A 107 707 726 HOH HOH . H 8 HOH A 108 708 787 HOH HOH . H 8 HOH A 109 709 722 HOH HOH . H 8 HOH A 110 710 715 HOH HOH . H 8 HOH A 111 711 734 HOH HOH . H 8 HOH A 112 712 797 HOH HOH . H 8 HOH A 113 713 871 HOH HOH . H 8 HOH A 114 714 774 HOH HOH . H 8 HOH A 115 715 740 HOH HOH . H 8 HOH A 116 716 727 HOH HOH . H 8 HOH A 117 717 730 HOH HOH . H 8 HOH A 118 718 767 HOH HOH . H 8 HOH A 119 719 770 HOH HOH . H 8 HOH A 120 720 756 HOH HOH . H 8 HOH A 121 721 830 HOH HOH . H 8 HOH A 122 722 771 HOH HOH . H 8 HOH A 123 723 837 HOH HOH . H 8 HOH A 124 724 834 HOH HOH . H 8 HOH A 125 725 750 HOH HOH . H 8 HOH A 126 726 760 HOH HOH . H 8 HOH A 127 727 860 HOH HOH . H 8 HOH A 128 728 799 HOH HOH . H 8 HOH A 129 729 823 HOH HOH . H 8 HOH A 130 730 738 HOH HOH . H 8 HOH A 131 731 832 HOH HOH . H 8 HOH A 132 732 810 HOH HOH . H 8 HOH A 133 733 846 HOH HOH . H 8 HOH A 134 734 718 HOH HOH . H 8 HOH A 135 735 803 HOH HOH . H 8 HOH A 136 736 785 HOH HOH . H 8 HOH A 137 737 758 HOH HOH . H 8 HOH A 138 738 779 HOH HOH . H 8 HOH A 139 739 820 HOH HOH . H 8 HOH A 140 740 843 HOH HOH . H 8 HOH A 141 741 847 HOH HOH . H 8 HOH A 142 742 736 HOH HOH . H 8 HOH A 143 743 853 HOH HOH . H 8 HOH A 144 744 815 HOH HOH . H 8 HOH A 145 745 710 HOH HOH . H 8 HOH A 146 746 835 HOH HOH . H 8 HOH A 147 747 813 HOH HOH . H 8 HOH A 148 748 841 HOH HOH . H 8 HOH A 149 749 866 HOH HOH . H 8 HOH A 150 750 795 HOH HOH . H 8 HOH A 151 751 783 HOH HOH . H 8 HOH A 152 752 867 HOH HOH . H 8 HOH A 153 753 856 HOH HOH . H 8 HOH A 154 754 782 HOH HOH . H 8 HOH A 155 755 877 HOH HOH . H 8 HOH A 156 756 806 HOH HOH . H 8 HOH A 157 757 743 HOH HOH . H 8 HOH A 158 758 863 HOH HOH . H 8 HOH A 159 759 822 HOH HOH . H 8 HOH A 160 760 862 HOH HOH . H 8 HOH A 161 761 831 HOH HOH . H 8 HOH A 162 762 844 HOH HOH . H 8 HOH A 163 763 873 HOH HOH . H 8 HOH A 164 764 840 HOH HOH . H 8 HOH A 165 765 854 HOH HOH . H 8 HOH A 166 766 802 HOH HOH . H 8 HOH A 167 767 796 HOH HOH . H 8 HOH A 168 768 848 HOH HOH . H 8 HOH A 169 769 864 HOH HOH . H 8 HOH A 170 770 868 HOH HOH . H 8 HOH A 171 771 826 HOH HOH . H 8 HOH A 172 772 811 HOH HOH . H 8 HOH A 173 773 857 HOH HOH . H 8 HOH A 174 774 850 HOH HOH . H 8 HOH A 175 775 861 HOH HOH . H 8 HOH A 176 776 842 HOH HOH . H 8 HOH A 177 777 829 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 2.13 _atom_site.Cartn_y 13.29 _atom_site.Cartn_z 12.607 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 509 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #