data_6BR8 # _model_server_result.job_id -5ihOcPxC9hicFmBlta4mw _model_server_result.datetime_utc '2024-11-09 02:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 6BR8 # _exptl.entry_id 6BR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR8 _cell.length_a 54.909 _cell.length_b 75.163 _cell.length_c 148.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 126 1_555 A N LYS 5 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 38 A LEU 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N GLU 40 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 165 A ILE 287 1_555 A N MSE 166 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 288 1_555 A N ALA 167 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 198 A GLU 320 1_555 A N MSE 199 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 199 A MSE 321 1_555 A N TYR 200 A TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 4 B MSE 126 1_555 B N LYS 5 B LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C LEU 38 B LEU 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 39 B MSE 161 1_555 B N GLU 40 B GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ILE 165 B ILE 287 1_555 B N MSE 166 B MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 166 B MSE 288 1_555 B N ALA 167 B ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C GLU 198 B GLU 320 1_555 B N MSE 199 B MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 B C MSE 199 B MSE 321 1_555 B N TYR 200 B TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 I C48 6OU . B 6OU 402 1_555 J C02 6OU . B 6OU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BR8 _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 401 401 6OU 6OU . D 2 6OU A 1 402 402 6OU 6OU . E 2 6OU A 1 403 403 6OU 6OU . F 3 PGV A 1 404 404 PGV PGV . G 2 6OU A 1 405 405 6OU 6OU . H 2 6OU B 1 401 401 6OU 6OU . I 2 6OU B 1 402 402 6OU 6OU . J 2 6OU B 1 403 403 6OU 6OU . K 3 PGV B 1 404 404 PGV PGV . L 2 6OU B 1 405 405 6OU 6OU . M 4 HOH A 1 501 502 HOH HOH . M 4 HOH A 2 502 501 HOH HOH . M 4 HOH A 3 503 504 HOH HOH . M 4 HOH A 4 504 503 HOH HOH . M 4 HOH A 5 505 506 HOH HOH . M 4 HOH A 6 506 505 HOH HOH . M 4 HOH A 7 507 510 HOH HOH . M 4 HOH A 8 508 509 HOH HOH . M 4 HOH A 9 509 508 HOH HOH . M 4 HOH A 10 510 507 HOH HOH . M 4 HOH A 11 511 511 HOH HOH . M 4 HOH A 12 512 515 HOH HOH . M 4 HOH A 13 513 513 HOH HOH . M 4 HOH A 14 514 514 HOH HOH . M 4 HOH A 15 515 512 HOH HOH . M 4 HOH A 16 516 517 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 502 502 HOH HOH . N 4 HOH B 3 503 508 HOH HOH . N 4 HOH B 4 504 505 HOH HOH . N 4 HOH B 5 505 510 HOH HOH . N 4 HOH B 6 506 504 HOH HOH . N 4 HOH B 7 507 503 HOH HOH . N 4 HOH B 8 508 507 HOH HOH . N 4 HOH B 9 509 509 HOH HOH . N 4 HOH B 10 510 513 HOH HOH . N 4 HOH B 11 511 506 HOH HOH . N 4 HOH B 12 512 511 HOH HOH . N 4 HOH B 13 513 512 HOH HOH . N 4 HOH B 14 514 515 HOH HOH . N 4 HOH B 15 515 514 HOH HOH . N 4 HOH B 16 516 517 HOH HOH . N 4 HOH B 17 517 518 HOH HOH . N 4 HOH B 18 518 519 HOH HOH . N 4 HOH B 19 519 516 HOH HOH . N 4 HOH B 20 520 521 HOH HOH . N 4 HOH B 21 521 520 HOH HOH . N 4 HOH B 22 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . H 2 -6.144 21.012 -13.64 1 88.71 ? C01 6OU 401 B 1 HETATM 2 C C02 6OU . . . H 2 -7.568 21.423 -14.022 1 77.58 ? C02 6OU 401 B 1 HETATM 3 C C03 6OU . . . H 2 -8.311 20.29 -14.719 1 76.61 ? C03 6OU 401 B 1 HETATM 4 C C04 6OU . . . H 2 -8.842 20.712 -16.084 1 73.31 ? C04 6OU 401 B 1 HETATM 5 C C05 6OU . . . H 2 -10.017 19.84 -16.503 1 72.97 ? C05 6OU 401 B 1 HETATM 6 C C06 6OU . . . H 2 -9.741 19.019 -17.754 1 73.15 ? C06 6OU 401 B 1 HETATM 7 C C07 6OU . . . H 2 -10.245 17.586 -17.62 1 80.42 ? C07 6OU 401 B 1 HETATM 8 C C08 6OU . . . H 2 -10.524 16.969 -18.987 1 90.37 ? C08 6OU 401 B 1 HETATM 9 C C09 6OU . . . H 2 -10.912 15.497 -18.873 1 89.88 ? C09 6OU 401 B 1 HETATM 10 C C10 6OU . . . H 2 -10.378 14.666 -20.041 1 82.09 ? C10 6OU 401 B 1 HETATM 11 C C11 6OU . . . H 2 -10.371 13.187 -19.675 1 82.16 ? C11 6OU 401 B 1 HETATM 12 C C12 6OU . . . H 2 -10.606 12.284 -20.876 1 85.88 ? C12 6OU 401 B 1 HETATM 13 C C13 6OU . . . H 2 -9.375 11.435 -21.166 1 89.44 ? C13 6OU 401 B 1 HETATM 14 C C14 6OU . . . H 2 -9.728 10.067 -21.733 1 84.43 ? C14 6OU 401 B 1 HETATM 15 C C15 6OU . . . H 2 -10.858 9.427 -20.947 1 81.94 ? C15 6OU 401 B 1 HETATM 16 C C16 6OU . . . H 2 -10.582 7.95 -20.779 1 79.88 ? C16 6OU 401 B 1 HETATM 17 O O17 6OU . . . H 2 -9.51 7.543 -21.041 1 87.21 ? O17 6OU 401 B 1 HETATM 18 O O18 6OU . . . H 2 -11.602 7.106 -20.35 1 82.76 ? O18 6OU 401 B 1 HETATM 19 C C19 6OU . . . H 2 -11.399 6.381 -19.181 1 80.92 ? C19 6OU 401 B 1 HETATM 20 C C20 6OU . . . H 2 -10.661 5.088 -19.505 1 86.81 ? C20 6OU 401 B 1 HETATM 21 C C21 6OU . . . H 2 -11.451 3.92 -18.906 1 92.16 ? C21 6OU 401 B 1 HETATM 22 O O22 6OU . . . H 2 -12.638 3.784 -19.635 1 92.9 ? O22 6OU 401 B 1 HETATM 23 P P23 6OU . . . H 2 -13.123 2.281 -20.081 0 89.82 ? P23 6OU 401 B 1 HETATM 24 O O24 6OU . . . H 2 -12.088 1.288 -19.615 1 91.55 ? O24 6OU 401 B 1 HETATM 25 O O25 6OU . . . H 2 -13.26 2.261 -21.583 1 88.26 -1 O25 6OU 401 B 1 HETATM 26 O O26 6OU . . . H 2 -14.573 1.92 -19.39 1 91.08 ? O26 6OU 401 B 1 HETATM 27 C C27 6OU . . . H 2 -14.846 2.376 -18.092 1 97.87 ? C27 6OU 401 B 1 HETATM 28 C C28 6OU . . . H 2 -13.825 1.759 -17.132 1 95.39 ? C28 6OU 401 B 1 HETATM 29 N N29 6OU . . . H 2 -14.172 2.012 -15.745 1 84.82 ? N29 6OU 401 B 1 HETATM 30 O O30 6OU . . . H 2 -9.413 5.297 -18.912 1 99.81 ? O30 6OU 401 B 1 HETATM 31 C C31 6OU . . . H 2 -8.542 4.257 -18.564 1 97.81 ? C31 6OU 401 B 1 HETATM 32 O O32 6OU . . . H 2 -8.654 3.162 -18.994 1 99.29 ? O32 6OU 401 B 1 HETATM 33 C C33 6OU . . . H 2 -7.391 4.586 -17.615 1 82.15 ? C33 6OU 401 B 1 HETATM 34 C C34 6OU . . . H 2 -6.386 5.525 -18.277 1 82.25 ? C34 6OU 401 B 1 HETATM 35 C C35 6OU . . . H 2 -6.849 6.981 -18.287 1 86.82 ? C35 6OU 401 B 1 HETATM 36 C C36 6OU . . . H 2 -6.109 7.802 -19.335 1 86.22 ? C36 6OU 401 B 1 HETATM 37 C C37 6OU . . . H 2 -5.651 9.171 -18.843 1 86.94 ? C37 6OU 401 B 1 HETATM 38 C C38 6OU . . . H 2 -5.782 10.243 -19.927 1 84.17 ? C38 6OU 401 B 1 HETATM 39 C C39 6OU . . . H 2 -4.804 11.398 -19.702 1 86.91 ? C39 6OU 401 B 1 HETATM 40 C C40 6OU . . . H 2 -4.873 12.497 -20.768 1 94.63 ? C40 6OU 401 B 1 HETATM 41 C C41 6OU . . . H 2 -6.092 12.768 -21.207 1 86.95 ? C41 6OU 401 B 1 HETATM 42 C C42 6OU . . . H 2 -6.187 14.093 -21.964 1 80.97 ? C42 6OU 401 B 1 HETATM 43 C C43 6OU . . . H 2 -5.356 15.213 -21.329 1 93.33 ? C43 6OU 401 B 1 HETATM 44 C C44 6OU . . . H 2 -6.196 16.396 -20.829 1 99.16 ? C44 6OU 401 B 1 HETATM 45 C C45 6OU . . . H 2 -5.974 16.724 -19.35 1 97.45 ? C45 6OU 401 B 1 HETATM 46 C C46 6OU . . . H 2 -5.604 18.183 -19.094 1 86.88 ? C46 6OU 401 B 1 HETATM 47 C C47 6OU . . . H 2 -4.579 18.274 -17.966 1 87.53 ? C47 6OU 401 B 1 HETATM 48 C C48 6OU . . . H 2 -3.463 19.283 -18.23 1 88.59 ? C48 6OU 401 B 1 HETATM 49 C C49 6OU . . . H 2 -2.733 19.683 -16.947 1 89.25 ? C49 6OU 401 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #