data_6BR8 # _model_server_result.job_id c-Sn5kvUTmXEfRr7zzjUyQ _model_server_result.datetime_utc '2024-11-09 02:06:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6BR8 # _exptl.entry_id 6BR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR8 _cell.length_a 54.909 _cell.length_b 75.163 _cell.length_c 148.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 126 1_555 A N LYS 5 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 38 A LEU 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N GLU 40 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 165 A ILE 287 1_555 A N MSE 166 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 288 1_555 A N ALA 167 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 198 A GLU 320 1_555 A N MSE 199 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 199 A MSE 321 1_555 A N TYR 200 A TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 4 B MSE 126 1_555 B N LYS 5 B LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C LEU 38 B LEU 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 39 B MSE 161 1_555 B N GLU 40 B GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ILE 165 B ILE 287 1_555 B N MSE 166 B MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 166 B MSE 288 1_555 B N ALA 167 B ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C GLU 198 B GLU 320 1_555 B N MSE 199 B MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 B C MSE 199 B MSE 321 1_555 B N TYR 200 B TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 I C48 6OU . B 6OU 402 1_555 J C02 6OU . B 6OU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BR8 _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 401 401 6OU 6OU . D 2 6OU A 1 402 402 6OU 6OU . E 2 6OU A 1 403 403 6OU 6OU . F 3 PGV A 1 404 404 PGV PGV . G 2 6OU A 1 405 405 6OU 6OU . H 2 6OU B 1 401 401 6OU 6OU . I 2 6OU B 1 402 402 6OU 6OU . J 2 6OU B 1 403 403 6OU 6OU . K 3 PGV B 1 404 404 PGV PGV . L 2 6OU B 1 405 405 6OU 6OU . M 4 HOH A 1 501 502 HOH HOH . M 4 HOH A 2 502 501 HOH HOH . M 4 HOH A 3 503 504 HOH HOH . M 4 HOH A 4 504 503 HOH HOH . M 4 HOH A 5 505 506 HOH HOH . M 4 HOH A 6 506 505 HOH HOH . M 4 HOH A 7 507 510 HOH HOH . M 4 HOH A 8 508 509 HOH HOH . M 4 HOH A 9 509 508 HOH HOH . M 4 HOH A 10 510 507 HOH HOH . M 4 HOH A 11 511 511 HOH HOH . M 4 HOH A 12 512 515 HOH HOH . M 4 HOH A 13 513 513 HOH HOH . M 4 HOH A 14 514 514 HOH HOH . M 4 HOH A 15 515 512 HOH HOH . M 4 HOH A 16 516 517 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 502 502 HOH HOH . N 4 HOH B 3 503 508 HOH HOH . N 4 HOH B 4 504 505 HOH HOH . N 4 HOH B 5 505 510 HOH HOH . N 4 HOH B 6 506 504 HOH HOH . N 4 HOH B 7 507 503 HOH HOH . N 4 HOH B 8 508 507 HOH HOH . N 4 HOH B 9 509 509 HOH HOH . N 4 HOH B 10 510 513 HOH HOH . N 4 HOH B 11 511 506 HOH HOH . N 4 HOH B 12 512 511 HOH HOH . N 4 HOH B 13 513 512 HOH HOH . N 4 HOH B 14 514 515 HOH HOH . N 4 HOH B 15 515 514 HOH HOH . N 4 HOH B 16 516 517 HOH HOH . N 4 HOH B 17 517 518 HOH HOH . N 4 HOH B 18 518 519 HOH HOH . N 4 HOH B 19 519 516 HOH HOH . N 4 HOH B 20 520 521 HOH HOH . N 4 HOH B 21 521 520 HOH HOH . N 4 HOH B 22 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . D 2 -29.476 14.714 -42.817 0 100.82 ? C01 6OU 402 A 1 HETATM 2 C C02 6OU . . . D 2 -30.069 13.852 -43.928 0 100.51 ? C02 6OU 402 A 1 HETATM 3 C C03 6OU . . . D 2 -29.126 12.73 -44.35 0 99.47 ? C03 6OU 402 A 1 HETATM 4 C C04 6OU . . . D 2 -29.712 11.876 -45.471 0 97.93 ? C04 6OU 402 A 1 HETATM 5 C C05 6OU . . . D 2 -28.866 11.969 -46.735 1 96.72 ? C05 6OU 402 A 1 HETATM 6 C C06 6OU . . . D 2 -27.919 10.787 -46.874 1 91.22 ? C06 6OU 402 A 1 HETATM 7 C C07 6OU . . . D 2 -26.798 11.076 -47.861 1 91.67 ? C07 6OU 402 A 1 HETATM 8 C C08 6OU . . . D 2 -26.417 9.823 -48.638 1 96.54 ? C08 6OU 402 A 1 HETATM 9 C C09 6OU . . . D 2 -26.05 10.152 -50.08 1 98.94 ? C09 6OU 402 A 1 HETATM 10 C C10 6OU . . . D 2 -24.573 10.489 -50.249 1 93.23 ? C10 6OU 402 A 1 HETATM 11 C C11 6OU . . . D 2 -23.692 9.399 -49.658 1 93.73 ? C11 6OU 402 A 1 HETATM 12 C C12 6OU . . . D 2 -23.834 8.07 -50.39 1 94.41 ? C12 6OU 402 A 1 HETATM 13 C C13 6OU . . . D 2 -22.566 7.763 -51.175 1 100.47 ? C13 6OU 402 A 1 HETATM 14 C C14 6OU . . . D 2 -22.586 6.404 -51.863 1 99.86 ? C14 6OU 402 A 1 HETATM 15 C C15 6OU . . . D 2 -22.499 5.228 -50.893 1 100.68 ? C15 6OU 402 A 1 HETATM 16 C C16 6OU . . . D 2 -22.472 3.877 -51.612 1 106.67 ? C16 6OU 402 A 1 HETATM 17 O O17 6OU . . . D 2 -21.721 3.022 -51.281 1 106.13 ? O17 6OU 402 A 1 HETATM 18 O O18 6OU . . . D 2 -23.353 3.641 -52.668 1 110.71 ? O18 6OU 402 A 1 HETATM 19 C C19 6OU . . . D 2 -24.684 3.826 -52.289 1 116.17 ? C19 6OU 402 A 1 HETATM 20 C C20 6OU . . . D 2 -25.442 2.5 -52.266 1 119.12 ? C20 6OU 402 A 1 HETATM 21 C C21 6OU . . . D 2 -24.665 1.412 -53.019 1 109.82 ? C21 6OU 402 A 1 HETATM 22 O O22 6OU . . . D 2 -23.638 1.062 -52.131 1 110.32 ? O22 6OU 402 A 1 HETATM 23 P P23 6OU . . . D 2 -22.874 -0.399 -52.168 0 107.81 ? P23 6OU 402 A 1 HETATM 24 O O24 6OU . . . D 2 -21.46 -0.21 -51.663 1 100.43 ? O24 6OU 402 A 1 HETATM 25 O O25 6OU . . . D 2 -22.849 -0.893 -53.598 1 107.51 -1 O25 6OU 402 A 1 HETATM 26 O O26 6OU . . . D 2 -23.62 -1.513 -51.196 1 113.79 ? O26 6OU 402 A 1 HETATM 27 C C27 6OU . . . D 2 -24.964 -1.361 -50.818 1 110.79 ? C27 6OU 402 A 1 HETATM 28 C C28 6OU . . . D 2 -25.843 -2.018 -51.883 1 109.02 ? C28 6OU 402 A 1 HETATM 29 N N29 6OU . . . D 2 -25.032 -2.46 -53.005 0 106.93 ? N29 6OU 402 A 1 HETATM 30 O O30 6OU . . . D 2 -26.788 2.675 -52.67 1 132.77 ? O30 6OU 402 A 1 HETATM 31 C C31 6OU . . . D 2 -27.179 3.052 -53.975 1 124.7 ? C31 6OU 402 A 1 HETATM 32 O O32 6OU . . . D 2 -27.688 2.242 -54.675 1 129.14 ? O32 6OU 402 A 1 HETATM 33 C C33 6OU . . . D 2 -27.044 4.484 -54.507 1 109.53 ? C33 6OU 402 A 1 HETATM 34 C C34 6OU . . . D 2 -27.486 5.527 -53.487 1 104.01 ? C34 6OU 402 A 1 HETATM 35 C C35 6OU . . . D 2 -28.367 6.598 -54.11 1 100.97 ? C35 6OU 402 A 1 HETATM 36 C C36 6OU . . . D 2 -27.548 7.781 -54.606 1 105.46 ? C36 6OU 402 A 1 HETATM 37 C C37 6OU . . . D 2 -28.251 9.111 -54.334 1 110.65 ? C37 6OU 402 A 1 HETATM 38 C C38 6OU . . . D 2 -28.29 9.485 -52.853 1 105.77 ? C38 6OU 402 A 1 HETATM 39 C C39 6OU . . . D 2 -29.493 10.355 -52.488 1 103.84 ? C39 6OU 402 A 1 HETATM 40 C C40 6OU . . . D 2 -29.237 11.851 -52.663 1 97.65 ? C40 6OU 402 A 1 HETATM 41 C C41 6OU . . . D 2 -29.649 12.314 -53.828 0 103.56 ? C41 6OU 402 A 1 HETATM 42 C C42 6OU . . . D 2 -30.962 11.686 -54.289 0 105.62 ? C42 6OU 402 A 1 HETATM 43 C C43 6OU . . . D 2 -32.102 12.697 -54.264 0 106.71 ? C43 6OU 402 A 1 HETATM 44 C C44 6OU . . . D 2 -32.558 13.052 -55.674 0 107.06 ? C44 6OU 402 A 1 HETATM 45 C C45 6OU . . . D 2 -34.077 13.083 -55.775 0 107.14 ? C45 6OU 402 A 1 HETATM 46 C C46 6OU . . . D 2 -34.595 14.482 -56.098 0 107.18 ? C46 6OU 402 A 1 HETATM 47 C C47 6OU . . . D 2 -35.421 15.072 -54.959 0 107.21 ? C47 6OU 402 A 1 HETATM 48 C C48 6OU . . . D 2 -36.006 16.443 -55.291 0 107.23 ? C48 6OU 402 A 1 HETATM 49 C C49 6OU . . . D 2 -34.948 17.531 -55.456 0 107.24 ? C49 6OU 402 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #