data_6BR8 # _model_server_result.job_id CmyqYQUKAHkVRN9ACZqekQ _model_server_result.datetime_utc '2024-11-09 01:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6BR8 # _exptl.entry_id 6BR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR8 _cell.length_a 54.909 _cell.length_b 75.163 _cell.length_c 148.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 126 1_555 A N LYS 5 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 38 A LEU 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N GLU 40 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 165 A ILE 287 1_555 A N MSE 166 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 288 1_555 A N ALA 167 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 198 A GLU 320 1_555 A N MSE 199 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 199 A MSE 321 1_555 A N TYR 200 A TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 4 B MSE 126 1_555 B N LYS 5 B LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C LEU 38 B LEU 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 39 B MSE 161 1_555 B N GLU 40 B GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ILE 165 B ILE 287 1_555 B N MSE 166 B MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 166 B MSE 288 1_555 B N ALA 167 B ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C GLU 198 B GLU 320 1_555 B N MSE 199 B MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 B C MSE 199 B MSE 321 1_555 B N TYR 200 B TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 I C48 6OU . B 6OU 402 1_555 J C02 6OU . B 6OU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL, 2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL' # _atom_sites.entry_id 6BR8 _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 401 401 6OU 6OU . D 2 6OU A 1 402 402 6OU 6OU . E 2 6OU A 1 403 403 6OU 6OU . F 3 PGV A 1 404 404 PGV PGV . G 2 6OU A 1 405 405 6OU 6OU . H 2 6OU B 1 401 401 6OU 6OU . I 2 6OU B 1 402 402 6OU 6OU . J 2 6OU B 1 403 403 6OU 6OU . K 3 PGV B 1 404 404 PGV PGV . L 2 6OU B 1 405 405 6OU 6OU . M 4 HOH A 1 501 502 HOH HOH . M 4 HOH A 2 502 501 HOH HOH . M 4 HOH A 3 503 504 HOH HOH . M 4 HOH A 4 504 503 HOH HOH . M 4 HOH A 5 505 506 HOH HOH . M 4 HOH A 6 506 505 HOH HOH . M 4 HOH A 7 507 510 HOH HOH . M 4 HOH A 8 508 509 HOH HOH . M 4 HOH A 9 509 508 HOH HOH . M 4 HOH A 10 510 507 HOH HOH . M 4 HOH A 11 511 511 HOH HOH . M 4 HOH A 12 512 515 HOH HOH . M 4 HOH A 13 513 513 HOH HOH . M 4 HOH A 14 514 514 HOH HOH . M 4 HOH A 15 515 512 HOH HOH . M 4 HOH A 16 516 517 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 502 502 HOH HOH . N 4 HOH B 3 503 508 HOH HOH . N 4 HOH B 4 504 505 HOH HOH . N 4 HOH B 5 505 510 HOH HOH . N 4 HOH B 6 506 504 HOH HOH . N 4 HOH B 7 507 503 HOH HOH . N 4 HOH B 8 508 507 HOH HOH . N 4 HOH B 9 509 509 HOH HOH . N 4 HOH B 10 510 513 HOH HOH . N 4 HOH B 11 511 506 HOH HOH . N 4 HOH B 12 512 511 HOH HOH . N 4 HOH B 13 513 512 HOH HOH . N 4 HOH B 14 514 515 HOH HOH . N 4 HOH B 15 515 514 HOH HOH . N 4 HOH B 16 516 517 HOH HOH . N 4 HOH B 17 517 518 HOH HOH . N 4 HOH B 18 518 519 HOH HOH . N 4 HOH B 19 519 516 HOH HOH . N 4 HOH B 20 520 521 HOH HOH . N 4 HOH B 21 521 520 HOH HOH . N 4 HOH B 22 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . F 3 -35.466 6.201 -73.351 0 99 ? P PGV 404 A 1 HETATM 2 C C01 PGV . . . F 3 -31.816 6.303 -70.255 1 90.32 ? C01 PGV 404 A 1 HETATM 3 C C02 PGV . . . F 3 -33.369 6.314 -70.728 1 100.12 ? C02 PGV 404 A 1 HETATM 4 C C03 PGV . . . F 3 -33.525 7.397 -71.827 1 106.7 ? C03 PGV 404 A 1 HETATM 5 C C04 PGV . . . F 3 -33.306 6.436 -75.037 1 93.76 ? C04 PGV 404 A 1 HETATM 6 C C05 PGV . . . F 3 -31.878 6.035 -74.559 1 103.71 ? C05 PGV 404 A 1 HETATM 7 C C06 PGV . . . F 3 -31.127 5.227 -75.692 1 107.41 ? C06 PGV 404 A 1 HETATM 8 O O01 PGV . . . F 3 -34.151 6.636 -69.597 1 106.14 ? O01 PGV 404 A 1 HETATM 9 O O02 PGV . . . F 3 -33.465 8.711 -69.143 1 102.7 ? O02 PGV 404 A 1 HETATM 10 O O03 PGV . . . F 3 -30.992 6.921 -71.251 1 83.27 ? O03 PGV 404 A 1 HETATM 11 O O04 PGV . . . F 3 -29.886 8.757 -71.872 1 98.53 ? O04 PGV 404 A 1 HETATM 12 O O05 PGV . . . F 3 -32.097 5.173 -73.458 1 111.93 ? O05 PGV 404 A 1 HETATM 13 O O06 PGV . . . F 3 -32.008 4.237 -76.208 1 108.02 ? O06 PGV 404 A 1 HETATM 14 O O11 PGV . . . F 3 -34.816 7.451 -72.374 1 111.63 ? O11 PGV 404 A 1 HETATM 15 O O12 PGV . . . F 3 -34.259 5.626 -74.399 1 101.48 ? O12 PGV 404 A 1 HETATM 16 O O13 PGV . . . F 3 -36.548 6.808 -74.208 1 90.18 ? O13 PGV 404 A 1 HETATM 17 O O14 PGV . . . F 3 -35.917 5.061 -72.456 1 98.22 -1 O14 PGV 404 A 1 HETATM 18 C C1 PGV . . . F 3 -34.424 7.956 -69.328 1 100.89 ? C1 PGV 404 A 1 HETATM 19 C C2 PGV . . . F 3 -35.861 8.474 -69.259 1 94.52 ? C2 PGV 404 A 1 HETATM 20 C C3 PGV . . . F 3 -36.082 9.591 -68.235 1 89.01 ? C3 PGV 404 A 1 HETATM 21 C C4 PGV . . . F 3 -35.361 10.91 -68.605 1 90.97 ? C4 PGV 404 A 1 HETATM 22 C C5 PGV . . . F 3 -35.298 11.902 -67.437 1 84.18 ? C5 PGV 404 A 1 HETATM 23 C C6 PGV . . . F 3 -33.86 12.213 -67.043 1 85.08 ? C6 PGV 404 A 1 HETATM 24 C C7 PGV . . . F 3 -33.728 12.754 -65.614 1 83.79 ? C7 PGV 404 A 1 HETATM 25 C C8 PGV . . . F 3 -34.848 13.735 -65.189 1 87.02 ? C8 PGV 404 A 1 HETATM 26 C C9 PGV . . . F 3 -34.675 14.216 -63.714 1 87.49 ? C9 PGV 404 A 1 HETATM 27 C C10 PGV . . . F 3 -33.352 13.706 -63.082 1 88.17 ? C10 PGV 404 A 1 HETATM 28 C C11 PGV . . . F 3 -32.865 14.472 -61.888 0 90.84 ? C11 PGV 404 A 1 HETATM 29 C C12 PGV . . . F 3 -33.47 15.607 -61.455 0 92.64 ? C12 PGV 404 A 1 HETATM 30 C C13 PGV . . . F 3 -32.964 16.359 -60.251 0 93.63 ? C13 PGV 404 A 1 HETATM 31 C C14 PGV . . . F 3 -33.708 17.686 -59.938 0 93.98 ? C14 PGV 404 A 1 HETATM 32 C C15 PGV . . . F 3 -32.763 18.787 -59.368 0 94.14 ? C15 PGV 404 A 1 HETATM 33 C C16 PGV . . . F 3 -32.929 20.175 -60.053 0 94.26 ? C16 PGV 404 A 1 HETATM 34 C C17 PGV . . . F 3 -33.461 21.268 -59.085 0 94.35 ? C17 PGV 404 A 1 HETATM 35 C C18 PGV . . . F 3 -32.853 22.652 -59.381 0 94.4 ? C18 PGV 404 A 1 HETATM 36 C C19 PGV . . . F 3 -30.359 8.105 -70.942 1 86.59 ? C19 PGV 404 A 1 HETATM 37 C C20 PGV . . . F 3 -30.238 8.632 -69.536 1 80.35 ? C20 PGV 404 A 1 HETATM 38 C C21 PGV . . . F 3 -29.489 9.987 -69.476 1 77.71 ? C21 PGV 404 A 1 HETATM 39 C C22 PGV . . . F 3 -28.364 9.896 -68.453 1 78.21 ? C22 PGV 404 A 1 HETATM 40 C C23 PGV . . . F 3 -28.404 10.989 -67.374 1 75.85 ? C23 PGV 404 A 1 HETATM 41 C C24 PGV . . . F 3 -27.342 10.715 -66.309 1 75.61 ? C24 PGV 404 A 1 HETATM 42 C C25 PGV . . . F 3 -27.554 11.528 -65.036 1 75.64 ? C25 PGV 404 A 1 HETATM 43 C C26 PGV . . . F 3 -26.257 11.764 -64.263 1 75.69 ? C26 PGV 404 A 1 HETATM 44 C C27 PGV . . . F 3 -26.373 12.91 -63.224 1 77.76 ? C27 PGV 404 A 1 HETATM 45 C C28 PGV . . . F 3 -25.514 12.643 -61.968 1 84.82 ? C28 PGV 404 A 1 HETATM 46 C C29 PGV . . . F 3 -25.817 13.579 -60.764 1 89.59 ? C29 PGV 404 A 1 HETATM 47 C C30 PGV . . . F 3 -25.5 12.9 -59.396 1 89.15 ? C30 PGV 404 A 1 HETATM 48 C C31 PGV . . . F 3 -25.002 13.858 -58.274 1 89.67 ? C31 PGV 404 A 1 HETATM 49 C C32 PGV . . . F 3 -23.746 13.306 -57.53 1 84.62 ? C32 PGV 404 A 1 HETATM 50 C C33 PGV . . . F 3 -22.434 14.076 -57.837 1 76.58 ? C33 PGV 404 A 1 HETATM 51 C C34 PGV . . . F 3 -21.2 13.156 -57.78 1 78.46 ? C34 PGV 404 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #