data_6BR8 # _model_server_result.job_id MLwDXOXJjME6-26qkCkBlg _model_server_result.datetime_utc '2024-11-09 02:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 6BR8 # _exptl.entry_id 6BR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR8 _cell.length_a 54.909 _cell.length_b 75.163 _cell.length_c 148.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 126 1_555 A N LYS 5 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 38 A LEU 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N GLU 40 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 165 A ILE 287 1_555 A N MSE 166 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 288 1_555 A N ALA 167 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 198 A GLU 320 1_555 A N MSE 199 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 199 A MSE 321 1_555 A N TYR 200 A TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 4 B MSE 126 1_555 B N LYS 5 B LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C LEU 38 B LEU 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 39 B MSE 161 1_555 B N GLU 40 B GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ILE 165 B ILE 287 1_555 B N MSE 166 B MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 166 B MSE 288 1_555 B N ALA 167 B ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C GLU 198 B GLU 320 1_555 B N MSE 199 B MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 B C MSE 199 B MSE 321 1_555 B N TYR 200 B TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 I C48 6OU . B 6OU 402 1_555 J C02 6OU . B 6OU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL, 2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL' # _atom_sites.entry_id 6BR8 _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 401 401 6OU 6OU . D 2 6OU A 1 402 402 6OU 6OU . E 2 6OU A 1 403 403 6OU 6OU . F 3 PGV A 1 404 404 PGV PGV . G 2 6OU A 1 405 405 6OU 6OU . H 2 6OU B 1 401 401 6OU 6OU . I 2 6OU B 1 402 402 6OU 6OU . J 2 6OU B 1 403 403 6OU 6OU . K 3 PGV B 1 404 404 PGV PGV . L 2 6OU B 1 405 405 6OU 6OU . M 4 HOH A 1 501 502 HOH HOH . M 4 HOH A 2 502 501 HOH HOH . M 4 HOH A 3 503 504 HOH HOH . M 4 HOH A 4 504 503 HOH HOH . M 4 HOH A 5 505 506 HOH HOH . M 4 HOH A 6 506 505 HOH HOH . M 4 HOH A 7 507 510 HOH HOH . M 4 HOH A 8 508 509 HOH HOH . M 4 HOH A 9 509 508 HOH HOH . M 4 HOH A 10 510 507 HOH HOH . M 4 HOH A 11 511 511 HOH HOH . M 4 HOH A 12 512 515 HOH HOH . M 4 HOH A 13 513 513 HOH HOH . M 4 HOH A 14 514 514 HOH HOH . M 4 HOH A 15 515 512 HOH HOH . M 4 HOH A 16 516 517 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 502 502 HOH HOH . N 4 HOH B 3 503 508 HOH HOH . N 4 HOH B 4 504 505 HOH HOH . N 4 HOH B 5 505 510 HOH HOH . N 4 HOH B 6 506 504 HOH HOH . N 4 HOH B 7 507 503 HOH HOH . N 4 HOH B 8 508 507 HOH HOH . N 4 HOH B 9 509 509 HOH HOH . N 4 HOH B 10 510 513 HOH HOH . N 4 HOH B 11 511 506 HOH HOH . N 4 HOH B 12 512 511 HOH HOH . N 4 HOH B 13 513 512 HOH HOH . N 4 HOH B 14 514 515 HOH HOH . N 4 HOH B 15 515 514 HOH HOH . N 4 HOH B 16 516 517 HOH HOH . N 4 HOH B 17 517 518 HOH HOH . N 4 HOH B 18 518 519 HOH HOH . N 4 HOH B 19 519 516 HOH HOH . N 4 HOH B 20 520 521 HOH HOH . N 4 HOH B 21 521 520 HOH HOH . N 4 HOH B 22 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . K 3 6.692 5.629 -1.431 1 138.79 ? P PGV 404 B 1 HETATM 2 C C01 PGV . . . K 3 2.271 6.05 -3.802 1 99.8 ? C01 PGV 404 B 1 HETATM 3 C C02 PGV . . . K 3 3.887 6.131 -3.994 1 109.33 ? C02 PGV 404 B 1 HETATM 4 C C03 PGV . . . K 3 4.506 6.584 -2.644 1 121.36 ? C03 PGV 404 B 1 HETATM 5 C C04 PGV . . . K 3 5.008 5.434 0.746 1 109.54 ? C04 PGV 404 B 1 HETATM 6 C C05 PGV . . . K 3 3.535 6.009 0.615 1 103.43 ? C05 PGV 404 B 1 HETATM 7 C C06 PGV . . . K 3 3.041 6.616 1.981 1 103.75 ? C06 PGV 404 B 1 HETATM 8 O O01 PGV . . . K 3 4.146 7.056 -5.057 1 109.43 ? O01 PGV 404 B 1 HETATM 9 O O02 PGV . . . K 3 3.899 9.046 -4.098 1 102.03 ? O02 PGV 404 B 1 HETATM 10 O O03 PGV . . . K 3 1.837 7.103 -2.92 1 90.32 ? O03 PGV 404 B 1 HETATM 11 O O04 PGV . . . K 3 -0.096 8.014 -2.267 1 103.57 ? O04 PGV 404 B 1 HETATM 12 O O05 PGV . . . K 3 2.703 4.929 0.273 1 108.87 ? O05 PGV 404 B 1 HETATM 13 O O06 PGV . . . K 3 1.648 6.89 1.85 1 105.24 ? O06 PGV 404 B 1 HETATM 14 O O11 PGV . . . K 3 5.898 6.53 -2.633 1 132.86 ? O11 PGV 404 B 1 HETATM 15 O O12 PGV . . . K 3 5.471 4.892 -0.469 1 124.49 ? O12 PGV 404 B 1 HETATM 16 O O13 PGV . . . K 3 7.49 6.567 -0.554 1 143.37 ? O13 PGV 404 B 1 HETATM 17 O O14 PGV . . . K 3 7.506 4.565 -2.137 1 138.08 -1 O14 PGV 404 B 1 HETATM 18 C C1 PGV . . . K 3 4.604 8.328 -4.794 1 98.16 ? C1 PGV 404 B 1 HETATM 19 C C2 PGV . . . K 3 5.928 8.851 -5.343 1 92.64 ? C2 PGV 404 B 1 HETATM 20 C C3 PGV . . . K 3 5.789 9.961 -6.403 1 89.58 ? C3 PGV 404 B 1 HETATM 21 C C4 PGV . . . K 3 4.952 11.174 -5.952 1 88.86 ? C4 PGV 404 B 1 HETATM 22 C C5 PGV . . . K 3 5.348 12.471 -6.671 1 88.35 ? C5 PGV 404 B 1 HETATM 23 C C6 PGV . . . K 3 4.398 12.828 -7.824 1 88.95 ? C6 PGV 404 B 1 HETATM 24 C C7 PGV . . . K 3 4.97 13.937 -8.727 1 87.76 ? C7 PGV 404 B 1 HETATM 25 C C8 PGV . . . K 3 4.769 13.648 -10.229 1 98.7 ? C8 PGV 404 B 1 HETATM 26 C C9 PGV . . . K 3 3.345 13.092 -10.565 1 103.74 ? C9 PGV 404 B 1 HETATM 27 C C10 PGV . . . K 3 2.491 14.027 -11.476 1 110.62 ? C10 PGV 404 B 1 HETATM 28 C C11 PGV . . . K 3 1.289 13.356 -12.144 1 107.47 ? C11 PGV 404 B 1 HETATM 29 C C12 PGV . . . K 3 0.582 13.929 -13.155 1 102.2 ? C12 PGV 404 B 1 HETATM 30 C C13 PGV . . . K 3 0.91 15.31 -13.712 0 97.24 ? C13 PGV 404 B 1 HETATM 31 C C14 PGV . . . K 3 0.076 15.738 -14.968 0 97.39 ? C14 PGV 404 B 1 HETATM 32 C C15 PGV . . . K 3 -0.48 17.204 -14.918 0 97.84 ? C15 PGV 404 B 1 HETATM 33 C C16 PGV . . . K 3 0.33 18.209 -15.798 0 98.02 ? C16 PGV 404 B 1 HETATM 34 C C17 PGV . . . K 3 1.119 19.272 -14.983 0 98.08 ? C17 PGV 404 B 1 HETATM 35 C C18 PGV . . . K 3 2.531 19.502 -15.56 0 98.11 ? C18 PGV 404 B 1 HETATM 36 C C19 PGV . . . K 3 0.659 7.779 -3.21 1 92.86 ? C19 PGV 404 B 1 HETATM 37 C C20 PGV . . . K 3 0.275 8.247 -4.617 1 86.36 ? C20 PGV 404 B 1 HETATM 38 C C21 PGV . . . K 3 -0.054 9.786 -4.666 1 84.69 ? C21 PGV 404 B 1 HETATM 39 C C22 PGV . . . K 3 -1.23 10.111 -5.6 1 83.64 ? C22 PGV 404 B 1 HETATM 40 C C23 PGV . . . K 3 -0.854 11 -6.795 1 82.43 ? C23 PGV 404 B 1 HETATM 41 C C24 PGV . . . K 3 -2.093 11.462 -7.605 1 81.93 ? C24 PGV 404 B 1 HETATM 42 C C25 PGV . . . K 3 -2.15 11.028 -9.091 1 81.54 ? C25 PGV 404 B 1 HETATM 43 C C26 PGV . . . K 3 -3.339 11.642 -9.859 1 81.25 ? C26 PGV 404 B 1 HETATM 44 C C27 PGV . . . K 3 -2.924 12.329 -11.179 1 81.25 ? C27 PGV 404 B 1 HETATM 45 C C28 PGV . . . K 3 -3.159 13.865 -11.17 1 89.39 ? C28 PGV 404 B 1 HETATM 46 C C29 PGV . . . K 3 -3.554 14.432 -12.569 1 93.07 ? C29 PGV 404 B 1 HETATM 47 C C30 PGV . . . K 3 -4.296 13.392 -13.479 1 95.27 ? C30 PGV 404 B 1 HETATM 48 C C31 PGV . . . K 3 -4.17 13.66 -15.026 1 89.73 ? C31 PGV 404 B 1 HETATM 49 C C32 PGV . . . K 3 -5.4 13.14 -15.834 1 84.14 ? C32 PGV 404 B 1 HETATM 50 C C33 PGV . . . K 3 -6.476 14.234 -16.128 1 84.17 ? C33 PGV 404 B 1 HETATM 51 C C34 PGV . . . K 3 -7.688 13.677 -16.893 1 80.46 ? C34 PGV 404 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #