data_6BR8 # _model_server_result.job_id VpjRRUHXkIfavVXMYFxlug _model_server_result.datetime_utc '2024-11-29 20:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6BR8 # _exptl.entry_id 6BR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR8 _cell.length_a 54.909 _cell.length_b 75.163 _cell.length_c 148.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 126 1_555 A N LYS 5 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 38 A LEU 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N GLU 40 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 165 A ILE 287 1_555 A N MSE 166 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 288 1_555 A N ALA 167 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 198 A GLU 320 1_555 A N MSE 199 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 199 A MSE 321 1_555 A N TYR 200 A TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 4 B MSE 126 1_555 B N LYS 5 B LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C LEU 38 B LEU 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 39 B MSE 161 1_555 B N GLU 40 B GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ILE 165 B ILE 287 1_555 B N MSE 166 B MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 166 B MSE 288 1_555 B N ALA 167 B ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C GLU 198 B GLU 320 1_555 B N MSE 199 B MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 B C MSE 199 B MSE 321 1_555 B N TYR 200 B TYR 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 I C48 6OU . B 6OU 402 1_555 J C02 6OU . B 6OU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6BR8 _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 401 401 6OU 6OU . D 2 6OU A 1 402 402 6OU 6OU . E 2 6OU A 1 403 403 6OU 6OU . F 3 PGV A 1 404 404 PGV PGV . G 2 6OU A 1 405 405 6OU 6OU . H 2 6OU B 1 401 401 6OU 6OU . I 2 6OU B 1 402 402 6OU 6OU . J 2 6OU B 1 403 403 6OU 6OU . K 3 PGV B 1 404 404 PGV PGV . L 2 6OU B 1 405 405 6OU 6OU . M 4 HOH A 1 501 502 HOH HOH . M 4 HOH A 2 502 501 HOH HOH . M 4 HOH A 3 503 504 HOH HOH . M 4 HOH A 4 504 503 HOH HOH . M 4 HOH A 5 505 506 HOH HOH . M 4 HOH A 6 506 505 HOH HOH . M 4 HOH A 7 507 510 HOH HOH . M 4 HOH A 8 508 509 HOH HOH . M 4 HOH A 9 509 508 HOH HOH . M 4 HOH A 10 510 507 HOH HOH . M 4 HOH A 11 511 511 HOH HOH . M 4 HOH A 12 512 515 HOH HOH . M 4 HOH A 13 513 513 HOH HOH . M 4 HOH A 14 514 514 HOH HOH . M 4 HOH A 15 515 512 HOH HOH . M 4 HOH A 16 516 517 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 502 502 HOH HOH . N 4 HOH B 3 503 508 HOH HOH . N 4 HOH B 4 504 505 HOH HOH . N 4 HOH B 5 505 510 HOH HOH . N 4 HOH B 6 506 504 HOH HOH . N 4 HOH B 7 507 503 HOH HOH . N 4 HOH B 8 508 507 HOH HOH . N 4 HOH B 9 509 509 HOH HOH . N 4 HOH B 10 510 513 HOH HOH . N 4 HOH B 11 511 506 HOH HOH . N 4 HOH B 12 512 511 HOH HOH . N 4 HOH B 13 513 512 HOH HOH . N 4 HOH B 14 514 515 HOH HOH . N 4 HOH B 15 515 514 HOH HOH . N 4 HOH B 16 516 517 HOH HOH . N 4 HOH B 17 517 518 HOH HOH . N 4 HOH B 18 518 519 HOH HOH . N 4 HOH B 19 519 516 HOH HOH . N 4 HOH B 20 520 521 HOH HOH . N 4 HOH B 21 521 520 HOH HOH . N 4 HOH B 22 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . G 2 -35.806 20.484 -46.158 1 96.49 ? C01 6OU 405 A 1 HETATM 2 C C02 6OU . . . G 2 -34.769 21.599 -46.253 1 98.79 ? C02 6OU 405 A 1 HETATM 3 C C03 6OU . . . G 2 -35.329 22.961 -45.854 1 100.77 ? C03 6OU 405 A 1 HETATM 4 C C04 6OU . . . G 2 -34.245 24.034 -45.776 1 97.26 ? C04 6OU 405 A 1 HETATM 5 C C05 6OU . . . G 2 -34.403 25.089 -46.867 1 98.41 ? C05 6OU 405 A 1 HETATM 6 C C06 6OU . . . G 2 -33.603 26.357 -46.582 1 97.41 ? C06 6OU 405 A 1 HETATM 7 C C07 6OU . . . G 2 -32.294 26.405 -47.364 1 98.99 ? C07 6OU 405 A 1 HETATM 8 C C08 6OU . . . G 2 -31.431 27.596 -46.968 1 99.73 ? C08 6OU 405 A 1 HETATM 9 C C09 6OU . . . G 2 -30.198 27.775 -47.848 1 102.78 ? C09 6OU 405 A 1 HETATM 10 C C10 6OU . . . G 2 -28.983 28.13 -46.993 1 109.52 ? C10 6OU 405 A 1 HETATM 11 C C11 6OU . . . G 2 -27.992 29.079 -47.663 1 110.79 ? C11 6OU 405 A 1 HETATM 12 C C12 6OU . . . G 2 -28.538 29.863 -48.856 1 114.95 ? C12 6OU 405 A 1 HETATM 13 C C13 6OU . . . G 2 -27.507 30.854 -49.402 1 112.77 ? C13 6OU 405 A 1 HETATM 14 C C14 6OU . . . G 2 -26.425 31.179 -48.37 1 110.44 ? C14 6OU 405 A 1 HETATM 15 C C15 6OU . . . G 2 -25.005 31.105 -48.929 1 118 ? C15 6OU 405 A 1 HETATM 16 C C16 6OU . . . G 2 -24.417 29.69 -48.975 1 118.97 ? C16 6OU 405 A 1 HETATM 17 O O17 6OU . . . G 2 -25.046 28.745 -48.623 1 111.28 ? O17 6OU 405 A 1 HETATM 18 O O18 6OU . . . G 2 -23.117 29.501 -49.45 1 119.93 ? O18 6OU 405 A 1 HETATM 19 C C19 6OU . . . G 2 -22.418 28.506 -48.764 1 113.72 ? C19 6OU 405 A 1 HETATM 20 C C20 6OU . . . G 2 -21.754 29.185 -47.568 1 110.89 ? C20 6OU 405 A 1 HETATM 21 C C21 6OU . . . G 2 -20.251 29.281 -47.82 1 114.79 ? C21 6OU 405 A 1 HETATM 22 O O22 6OU . . . G 2 -20.123 30.053 -48.978 1 127.05 ? O22 6OU 405 A 1 HETATM 23 P P23 6OU . . . G 2 -19.318 31.49 -48.891 1 141.18 ? P23 6OU 405 A 1 HETATM 24 O O24 6OU . . . G 2 -18.64 31.755 -50.219 1 142.52 ? O24 6OU 405 A 1 HETATM 25 O O25 6OU . . . G 2 -18.281 31.394 -47.791 1 144.27 -1 O25 6OU 405 A 1 HETATM 26 O O26 6OU . . . G 2 -20.338 32.749 -48.553 1 142.46 ? O26 6OU 405 A 1 HETATM 27 C C27 6OU . . . G 2 -21.729 32.63 -48.697 1 133.35 ? C27 6OU 405 A 1 HETATM 28 C C28 6OU . . . G 2 -22.318 34.04 -48.746 1 120.36 ? C28 6OU 405 A 1 HETATM 29 N N29 6OU . . . G 2 -23.758 33.999 -48.9 1 110.88 ? N29 6OU 405 A 1 HETATM 30 O O30 6OU . . . G 2 -22.057 28.552 -46.344 1 111.71 ? O30 6OU 405 A 1 HETATM 31 C C31 6OU . . . G 2 -21.916 27.159 -46.219 1 110.37 ? C31 6OU 405 A 1 HETATM 32 O O32 6OU . . . G 2 -20.853 26.69 -45.999 1 114.99 ? O32 6OU 405 A 1 HETATM 33 C C33 6OU . . . G 2 -23.129 26.23 -46.318 1 110.77 ? C33 6OU 405 A 1 HETATM 34 C C34 6OU . . . G 2 -23.533 25.671 -44.956 1 111.08 ? C34 6OU 405 A 1 HETATM 35 C C35 6OU . . . G 2 -24.898 24.989 -44.967 1 104.6 ? C35 6OU 405 A 1 HETATM 36 C C36 6OU . . . G 2 -25.68 25.282 -43.693 1 103.91 ? C36 6OU 405 A 1 HETATM 37 C C37 6OU . . . G 2 -26.884 24.363 -43.53 1 104.38 ? C37 6OU 405 A 1 HETATM 38 C C38 6OU . . . G 2 -28.211 25.086 -43.741 1 100.55 ? C38 6OU 405 A 1 HETATM 39 C C39 6OU . . . G 2 -29.352 24.303 -43.095 1 104.69 ? C39 6OU 405 A 1 HETATM 40 C C40 6OU . . . G 2 -30.006 23.298 -44.043 1 107.33 ? C40 6OU 405 A 1 HETATM 41 C C41 6OU . . . G 2 -30.033 22.079 -43.542 1 104.48 ? C41 6OU 405 A 1 HETATM 42 C C42 6OU . . . G 2 -30.597 21.057 -44.527 0 106.02 ? C42 6OU 405 A 1 HETATM 43 C C43 6OU . . . G 2 -29.712 19.817 -44.643 0 107.39 ? C43 6OU 405 A 1 HETATM 44 C C44 6OU . . . G 2 -30.493 18.525 -44.41 0 108.13 ? C44 6OU 405 A 1 HETATM 45 C C45 6OU . . . G 2 -30.215 17.468 -45.476 0 108.25 ? C45 6OU 405 A 1 HETATM 46 C C46 6OU . . . G 2 -31.494 16.949 -46.129 0 108.23 ? C46 6OU 405 A 1 HETATM 47 C C47 6OU . . . G 2 -31.203 15.963 -47.259 0 108.21 ? C47 6OU 405 A 1 HETATM 48 C C48 6OU . . . G 2 -32.083 14.716 -47.189 0 108.21 ? C48 6OU 405 A 1 HETATM 49 C C49 6OU . . . G 2 -33.437 14.92 -47.864 0 108.21 ? C49 6OU 405 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 49 #