data_6BR9 # _model_server_result.job_id Vtam4Vi4rzzExKeqLxknRw _model_server_result.datetime_utc '2024-11-29 22:14:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6BR9 # _exptl.entry_id 6BR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR9 _cell.length_a 54.699 _cell.length_b 74.151 _cell.length_c 143.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6BR9 _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OU A 1 401 401 6OU 6OU . C 2 6OU A 1 402 402 6OU 6OU . D 2 6OU A 1 403 403 6OU 6OU . E 3 PGV A 1 404 404 PGV PGV . F 2 6OU A 1 405 405 6OU 6OU . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 510 HOH HOH . G 4 HOH A 10 510 509 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 527 HOH HOH . G 4 HOH A 18 518 517 HOH HOH . G 4 HOH A 19 519 518 HOH HOH . G 4 HOH A 20 520 519 HOH HOH . G 4 HOH A 21 521 520 HOH HOH . G 4 HOH A 22 522 521 HOH HOH . G 4 HOH A 23 523 522 HOH HOH . G 4 HOH A 24 524 523 HOH HOH . G 4 HOH A 25 525 524 HOH HOH . G 4 HOH A 26 526 525 HOH HOH . G 4 HOH A 27 527 526 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 538 HOH HOH . G 4 HOH A 38 538 537 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . B 2 46.95 17.027 14.904 1 66.4 ? C01 6OU 401 A 1 HETATM 2 C C02 6OU . . . B 2 48.03 16.649 15.897 1 62.83 ? C02 6OU 401 A 1 HETATM 3 C C03 6OU . . . B 2 48.541 15.255 15.634 1 62.8 ? C03 6OU 401 A 1 HETATM 4 C C04 6OU . . . B 2 49.544 14.838 16.675 1 63.78 ? C04 6OU 401 A 1 HETATM 5 C C05 6OU . . . B 2 50.144 13.504 16.335 1 66.18 ? C05 6OU 401 A 1 HETATM 6 C C06 6OU . . . B 2 50.587 12.794 17.589 1 68.42 ? C06 6OU 401 A 1 HETATM 7 C C07 6OU . . . B 2 51.089 11.413 17.247 1 72.59 ? C07 6OU 401 A 1 HETATM 8 C C08 6OU . . . B 2 50.057 10.37 17.621 1 74.74 ? C08 6OU 401 A 1 HETATM 9 C C09 6OU . . . B 2 50.474 8.978 17.202 1 75.04 ? C09 6OU 401 A 1 HETATM 10 C C10 6OU . . . B 2 50.715 8.113 18.424 1 71.65 ? C10 6OU 401 A 1 HETATM 11 C C11 6OU . . . B 2 49.814 6.902 18.458 1 68.63 ? C11 6OU 401 A 1 HETATM 12 C C12 6OU . . . B 2 50.484 5.661 17.906 1 67.57 ? C12 6OU 401 A 1 HETATM 13 C C13 6OU . . . B 2 49.54 4.475 17.951 1 65.15 ? C13 6OU 401 A 1 HETATM 14 C C14 6OU . . . B 2 50.263 3.148 17.902 1 61.39 ? C14 6OU 401 A 1 HETATM 15 C C15 6OU . . . B 2 50.806 2.861 16.516 1 64.23 ? C15 6OU 401 A 1 HETATM 16 C C16 6OU . . . B 2 50.634 1.427 16.105 1 67.02 ? C16 6OU 401 A 1 HETATM 17 O O17 6OU . . . B 2 49.952 0.748 16.731 1 73.97 ? O17 6OU 401 A 1 HETATM 18 O O18 6OU . . . B 2 51.269 0.892 15.017 1 66.46 ? O18 6OU 401 A 1 HETATM 19 C C19 6OU . . . B 2 50.407 0.39 14.061 1 71.69 ? C19 6OU 401 A 1 HETATM 20 C C20 6OU . . . B 2 49.827 -0.892 14.605 1 75.75 ? C20 6OU 401 A 1 HETATM 21 C C21 6OU . . . B 2 50.466 -2.034 13.894 1 77.09 ? C21 6OU 401 A 1 HETATM 22 O O22 6OU . . . B 2 51.747 -1.985 14.384 1 78.59 ? O22 6OU 401 A 1 HETATM 23 P P23 6OU . . . B 2 52.5 -3.427 14.461 0 81.18 ? P23 6OU 401 A 1 HETATM 24 O O24 6OU . . . B 2 51.64 -4.361 15.273 1 82.24 ? O24 6OU 401 A 1 HETATM 25 O O25 6OU . . . B 2 53.84 -3.23 15.096 1 85.15 -1 O25 6OU 401 A 1 HETATM 26 O O26 6OU . . . B 2 52.743 -4.035 12.962 1 79.12 ? O26 6OU 401 A 1 HETATM 27 C C27 6OU . . . B 2 53.989 -3.81 12.384 1 77.92 ? C27 6OU 401 A 1 HETATM 28 C C28 6OU . . . B 2 54.206 -2.314 12.191 1 75.36 ? C28 6OU 401 A 1 HETATM 29 N N29 6OU . . . B 2 54.38 -2.021 10.787 1 73.48 ? N29 6OU 401 A 1 HETATM 30 O O30 6OU . . . B 2 48.45 -0.948 14.49 1 78.88 ? O30 6OU 401 A 1 HETATM 31 C C31 6OU . . . B 2 47.894 -0.829 13.242 1 80.43 ? C31 6OU 401 A 1 HETATM 32 O O32 6OU . . . B 2 48.283 -1.511 12.392 1 84.61 ? O32 6OU 401 A 1 HETATM 33 C C33 6OU . . . B 2 46.758 0.139 12.99 1 74.58 ? C33 6OU 401 A 1 HETATM 34 C C34 6OU . . . B 2 47.057 1.501 13.572 1 70.99 ? C34 6OU 401 A 1 HETATM 35 C C35 6OU . . . B 2 45.945 2.048 14.441 1 71.31 ? C35 6OU 401 A 1 HETATM 36 C C36 6OU . . . B 2 46.291 3.371 15.113 1 69.49 ? C36 6OU 401 A 1 HETATM 37 C C37 6OU . . . B 2 45.184 3.854 16.031 1 73.91 ? C37 6OU 401 A 1 HETATM 38 C C38 6OU . . . B 2 45.367 5.272 16.545 1 76.84 ? C38 6OU 401 A 1 HETATM 39 C C39 6OU . . . B 2 45.285 5.327 18.062 1 81.15 ? C39 6OU 401 A 1 HETATM 40 C C40 6OU . . . B 2 45.859 6.616 18.634 1 83.52 ? C40 6OU 401 A 1 HETATM 41 C C41 6OU . . . B 2 45.074 7.162 19.525 1 84.71 ? C41 6OU 401 A 1 HETATM 42 C C42 6OU . . . B 2 45.735 8.347 20.208 1 84.21 ? C42 6OU 401 A 1 HETATM 43 C C43 6OU . . . B 2 46.281 9.375 19.226 1 83.03 ? C43 6OU 401 A 1 HETATM 44 C C44 6OU . . . B 2 45.652 10.757 19.356 1 80.95 ? C44 6OU 401 A 1 HETATM 45 C C45 6OU . . . B 2 45.492 11.457 18.009 1 78.97 ? C45 6OU 401 A 1 HETATM 46 C C46 6OU . . . B 2 44.373 12.482 18.01 1 79.34 ? C46 6OU 401 A 1 HETATM 47 C C47 6OU . . . B 2 44.532 13.541 16.933 1 79.08 ? C47 6OU 401 A 1 HETATM 48 C C48 6OU . . . B 2 43.181 14.038 16.443 1 77.24 ? C48 6OU 401 A 1 HETATM 49 C C49 6OU . . . B 2 42.998 15.539 16.611 1 76.19 ? C49 6OU 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 49 #