data_6BR9 # _model_server_result.job_id nac2gSloafrOZPDfIg9uVA _model_server_result.datetime_utc '2024-11-26 11:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6BR9 # _exptl.entry_id 6BR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR9 _cell.length_a 54.699 _cell.length_b 74.151 _cell.length_c 143.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6BR9 _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OU A 1 401 401 6OU 6OU . C 2 6OU A 1 402 402 6OU 6OU . D 2 6OU A 1 403 403 6OU 6OU . E 3 PGV A 1 404 404 PGV PGV . F 2 6OU A 1 405 405 6OU 6OU . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 510 HOH HOH . G 4 HOH A 10 510 509 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 527 HOH HOH . G 4 HOH A 18 518 517 HOH HOH . G 4 HOH A 19 519 518 HOH HOH . G 4 HOH A 20 520 519 HOH HOH . G 4 HOH A 21 521 520 HOH HOH . G 4 HOH A 22 522 521 HOH HOH . G 4 HOH A 23 523 522 HOH HOH . G 4 HOH A 24 524 523 HOH HOH . G 4 HOH A 25 525 524 HOH HOH . G 4 HOH A 26 526 525 HOH HOH . G 4 HOH A 27 527 526 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 538 HOH HOH . G 4 HOH A 38 538 537 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . C 2 40.139 4.293 29.562 1 71.66 ? C01 6OU 402 A 1 HETATM 2 C C02 6OU . . . C 2 39.373 5.444 28.917 1 66.9 ? C02 6OU 402 A 1 HETATM 3 C C03 6OU . . . C 2 39.773 5.655 27.457 1 71.21 ? C03 6OU 402 A 1 HETATM 4 C C04 6OU . . . C 2 39.725 4.365 26.635 1 73.84 ? C04 6OU 402 A 1 HETATM 5 C C05 6OU . . . C 2 39.727 4.597 25.123 1 74.37 ? C05 6OU 402 A 1 HETATM 6 C C06 6OU . . . C 2 40.141 3.345 24.343 1 73.52 ? C06 6OU 402 A 1 HETATM 7 C C07 6OU . . . C 2 41.633 3.317 23.984 1 73.7 ? C07 6OU 402 A 1 HETATM 8 C C08 6OU . . . C 2 41.863 2.77 22.57 1 73.43 ? C08 6OU 402 A 1 HETATM 9 C C09 6OU . . . C 2 43.265 3.027 22.002 1 70.01 ? C09 6OU 402 A 1 HETATM 10 C C10 6OU . . . C 2 43.587 2.079 20.84 1 66.54 ? C10 6OU 402 A 1 HETATM 11 C C11 6OU . . . C 2 45.032 2.168 20.331 1 65.89 ? C11 6OU 402 A 1 HETATM 12 C C12 6OU . . . C 2 45.653 0.786 20.104 1 66.34 ? C12 6OU 402 A 1 HETATM 13 C C13 6OU . . . C 2 46.666 0.734 18.957 1 68.37 ? C13 6OU 402 A 1 HETATM 14 C C14 6OU . . . C 2 47.145 -0.684 18.623 1 72.59 ? C14 6OU 402 A 1 HETATM 15 C C15 6OU . . . C 2 46.296 -1.375 17.544 1 78.55 ? C15 6OU 402 A 1 HETATM 16 C C16 6OU . . . C 2 46.831 -2.739 17.082 1 84.04 ? C16 6OU 402 A 1 HETATM 17 O O17 6OU . . . C 2 47.963 -3.024 17.275 1 86.36 ? O17 6OU 402 A 1 HETATM 18 O O18 6OU . . . C 2 46 -3.666 16.427 1 87.19 ? O18 6OU 402 A 1 HETATM 19 C C19 6OU . . . C 2 44.69 -3.214 16.211 1 87.86 ? C19 6OU 402 A 1 HETATM 20 C C20 6OU . . . C 2 44.04 -4.041 15.096 1 87.68 ? C20 6OU 402 A 1 HETATM 21 C C21 6OU . . . C 2 45.063 -4.736 14.202 0 86.02 ? C21 6OU 402 A 1 HETATM 22 O O22 6OU . . . C 2 44.681 -6.072 14.052 0 84.82 ? O22 6OU 402 A 1 HETATM 23 P P23 6OU . . . C 2 45.626 -7.26 14.692 0 84.07 ? P23 6OU 402 A 1 HETATM 24 O O24 6OU . . . C 2 47.082 -6.876 14.595 0 83.68 ? O24 6OU 402 A 1 HETATM 25 O O25 6OU . . . C 2 45.386 -8.546 13.938 0 83.68 -1 O25 6OU 402 A 1 HETATM 26 O O26 6OU . . . C 2 45.219 -7.467 16.272 1 84.51 ? O26 6OU 402 A 1 HETATM 27 C C27 6OU . . . C 2 43.858 -7.516 16.576 1 84.21 ? C27 6OU 402 A 1 HETATM 28 C C28 6OU . . . C 2 43.426 -8.976 16.516 1 83.59 ? C28 6OU 402 A 1 HETATM 29 N N29 6OU . . . C 2 43.734 -9.623 17.778 1 83.67 ? N29 6OU 402 A 1 HETATM 30 O O30 6OU . . . C 2 43.265 -3.18 14.293 1 86.11 ? O30 6OU 402 A 1 HETATM 31 C C31 6OU . . . C 2 42.023 -2.803 14.824 1 83.51 ? C31 6OU 402 A 1 HETATM 32 O O32 6OU . . . C 2 41.118 -3.565 14.807 1 83.24 ? O32 6OU 402 A 1 HETATM 33 C C33 6OU . . . C 2 41.806 -1.415 15.426 1 82.85 ? C33 6OU 402 A 1 HETATM 34 C C34 6OU . . . C 2 42.704 -0.329 14.84 1 81.79 ? C34 6OU 402 A 1 HETATM 35 C C35 6OU . . . C 2 42.152 1.071 15.123 1 82.22 ? C35 6OU 402 A 1 HETATM 36 C C36 6OU . . . C 2 41.634 1.229 16.555 1 80.48 ? C36 6OU 402 A 1 HETATM 37 C C37 6OU . . . C 2 40.914 2.562 16.761 1 78.51 ? C37 6OU 402 A 1 HETATM 38 C C38 6OU . . . C 2 41.438 3.353 17.963 1 78.58 ? C38 6OU 402 A 1 HETATM 39 C C39 6OU . . . C 2 40.692 4.676 18.146 1 77.52 ? C39 6OU 402 A 1 HETATM 40 C C40 6OU . . . C 2 41.159 5.481 19.357 1 77.68 ? C40 6OU 402 A 1 HETATM 41 C C41 6OU . . . C 2 41.044 6.8 19.328 1 77.34 ? C41 6OU 402 A 1 HETATM 42 C C42 6OU . . . C 2 41.481 7.697 20.495 1 73.27 ? C42 6OU 402 A 1 HETATM 43 C C43 6OU . . . C 2 42.643 7.115 21.301 1 74.55 ? C43 6OU 402 A 1 HETATM 44 C C44 6OU . . . C 2 42.685 7.681 22.719 0 74.34 ? C44 6OU 402 A 1 HETATM 45 C C45 6OU . . . C 2 44.028 8.338 23.026 0 74.32 ? C45 6OU 402 A 1 HETATM 46 C C46 6OU . . . C 2 43.848 9.792 23.446 0 74.03 ? C46 6OU 402 A 1 HETATM 47 C C47 6OU . . . C 2 45.035 10.677 23.077 0 73.77 ? C47 6OU 402 A 1 HETATM 48 C C48 6OU . . . C 2 44.561 12.01 22.507 0 73.69 ? C48 6OU 402 A 1 HETATM 49 C C49 6OU . . . C 2 45.671 13.055 22.471 0 73.67 ? C49 6OU 402 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #