data_6BR9 # _model_server_result.job_id 6zkgjB_ROuzhdoxYs2ACBg _model_server_result.datetime_utc '2024-11-08 20:55:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6br9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6BR9 # _exptl.entry_id 6BR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BR9 _cell.length_a 54.699 _cell.length_b 74.151 _cell.length_c 143.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 PGV sing 361 n n P O12 PGV sing 362 n n P O13 PGV doub 363 n n P O14 PGV sing 364 n n C01 C02 PGV sing 365 n n C01 O03 PGV sing 366 n n C01 H011 PGV sing 367 n n C01 H012 PGV sing 368 n n C02 C03 PGV sing 369 n n C02 O01 PGV sing 370 n n C02 H02 PGV sing 371 n n C03 O11 PGV sing 372 n n C03 H031 PGV sing 373 n n C03 H032 PGV sing 374 n n C04 C05 PGV sing 375 n n C04 O12 PGV sing 376 n n C04 H041 PGV sing 377 n n C04 H042 PGV sing 378 n n C05 C06 PGV sing 379 n n C05 O05 PGV sing 380 n n C05 H05 PGV sing 381 n n C06 O06 PGV sing 382 n n C06 H061 PGV sing 383 n n C06 H062 PGV sing 384 n n O01 C1 PGV sing 385 n n O02 C1 PGV doub 386 n n O03 C19 PGV sing 387 n n O04 C19 PGV doub 388 n n O05 H1 PGV sing 389 n n O06 H06 PGV sing 390 n n O14 H14 PGV sing 391 n n C1 C2 PGV sing 392 n n C2 C3 PGV sing 393 n n C2 H21 PGV sing 394 n n C2 H22 PGV sing 395 n n C3 C4 PGV sing 396 n n C3 H31 PGV sing 397 n n C3 H32 PGV sing 398 n n C4 C5 PGV sing 399 n n C4 H41 PGV sing 400 n n C4 H42 PGV sing 401 n n C5 C6 PGV sing 402 n n C5 H51 PGV sing 403 n n C5 H52 PGV sing 404 n n C6 C7 PGV sing 405 n n C6 H61 PGV sing 406 n n C6 H62 PGV sing 407 n n C7 C8 PGV sing 408 n n C7 H71 PGV sing 409 n n C7 H72 PGV sing 410 n n C8 C9 PGV sing 411 n n C8 H81 PGV sing 412 n n C8 H82 PGV sing 413 n n C9 C10 PGV sing 414 n n C9 H91 PGV sing 415 n n C9 H92 PGV sing 416 n n C10 C11 PGV sing 417 n n C10 H101 PGV sing 418 n n C10 H102 PGV sing 419 n n C11 C12 PGV doub 420 z n C11 H11 PGV sing 421 n n C12 C13 PGV sing 422 n n C12 H12 PGV sing 423 n n C13 C14 PGV sing 424 n n C13 H131 PGV sing 425 n n C13 H132 PGV sing 426 n n C14 C15 PGV sing 427 n n C14 H141 PGV sing 428 n n C14 H142 PGV sing 429 n n C15 C16 PGV sing 430 n n C15 H151 PGV sing 431 n n C15 H152 PGV sing 432 n n C16 C17 PGV sing 433 n n C16 H161 PGV sing 434 n n C16 H162 PGV sing 435 n n C17 C18 PGV sing 436 n n C17 H171 PGV sing 437 n n C17 H172 PGV sing 438 n n C18 H181 PGV sing 439 n n C18 H182 PGV sing 440 n n C18 H183 PGV sing 441 n n C19 C20 PGV sing 442 n n C20 C21 PGV sing 443 n n C20 H201 PGV sing 444 n n C20 H202 PGV sing 445 n n C21 C22 PGV sing 446 n n C21 H211 PGV sing 447 n n C21 H212 PGV sing 448 n n C22 C23 PGV sing 449 n n C22 H221 PGV sing 450 n n C22 H222 PGV sing 451 n n C23 C24 PGV sing 452 n n C23 H231 PGV sing 453 n n C23 H232 PGV sing 454 n n C24 C25 PGV sing 455 n n C24 H241 PGV sing 456 n n C24 H242 PGV sing 457 n n C25 C26 PGV sing 458 n n C25 H251 PGV sing 459 n n C25 H252 PGV sing 460 n n C26 C27 PGV sing 461 n n C26 H261 PGV sing 462 n n C26 H262 PGV sing 463 n n C27 C28 PGV sing 464 n n C27 H271 PGV sing 465 n n C27 H272 PGV sing 466 n n C28 C29 PGV sing 467 n n C28 H281 PGV sing 468 n n C28 H282 PGV sing 469 n n C29 C30 PGV sing 470 n n C29 H291 PGV sing 471 n n C29 H292 PGV sing 472 n n C30 C31 PGV sing 473 n n C30 H301 PGV sing 474 n n C30 H302 PGV sing 475 n n C31 C32 PGV sing 476 n n C31 H311 PGV sing 477 n n C31 H312 PGV sing 478 n n C32 C33 PGV sing 479 n n C32 H321 PGV sing 480 n n C32 H322 PGV sing 481 n n C33 C34 PGV sing 482 n n C33 H331 PGV sing 483 n n C33 H332 PGV sing 484 n n C34 H341 PGV sing 485 n n C34 H342 PGV sing 486 n n C34 H343 PGV sing 487 n n # _atom_sites.entry_id 6BR9 _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OU A 1 401 401 6OU 6OU . C 2 6OU A 1 402 402 6OU 6OU . D 2 6OU A 1 403 403 6OU 6OU . E 3 PGV A 1 404 404 PGV PGV . F 2 6OU A 1 405 405 6OU 6OU . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 510 HOH HOH . G 4 HOH A 10 510 509 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 527 HOH HOH . G 4 HOH A 18 518 517 HOH HOH . G 4 HOH A 19 519 518 HOH HOH . G 4 HOH A 20 520 519 HOH HOH . G 4 HOH A 21 521 520 HOH HOH . G 4 HOH A 22 522 521 HOH HOH . G 4 HOH A 23 523 522 HOH HOH . G 4 HOH A 24 524 523 HOH HOH . G 4 HOH A 25 525 524 HOH HOH . G 4 HOH A 26 526 525 HOH HOH . G 4 HOH A 27 527 526 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 538 HOH HOH . G 4 HOH A 38 538 537 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . E 3 38.56 7.135 -3.733 1 89.6 ? P PGV 404 A 1 HETATM 2 C C01 PGV . . . E 3 37.631 5.413 0.599 1 72.43 ? C01 PGV 404 A 1 HETATM 3 C C02 PGV . . . E 3 36.705 5.721 -0.705 1 77.87 ? C02 PGV 404 A 1 HETATM 4 C C03 PGV . . . E 3 37.242 7.044 -1.369 1 82.26 ? C03 PGV 404 A 1 HETATM 5 C C04 PGV . . . E 3 35.969 6.925 -4.53 1 89.01 ? C04 PGV 404 A 1 HETATM 6 C C05 PGV . . . E 3 34.71 7.189 -3.588 1 86.7 ? C05 PGV 404 A 1 HETATM 7 C C06 PGV . . . E 3 34.005 5.814 -3.254 1 79.22 ? C06 PGV 404 A 1 HETATM 8 O O01 PGV . . . E 3 35.338 5.834 -0.26 1 78.48 ? O01 PGV 404 A 1 HETATM 9 O O02 PGV . . . E 3 34.331 6.01 1.738 1 85.71 ? O02 PGV 404 A 1 HETATM 10 O O03 PGV . . . E 3 39.033 5.67 0.288 1 70.65 ? O03 PGV 404 A 1 HETATM 11 O O04 PGV . . . E 3 40.518 7.248 -0.269 1 66.75 ? O04 PGV 404 A 1 HETATM 12 O O05 PGV . . . E 3 33.806 8.005 -4.3 1 90.46 ? O05 PGV 404 A 1 HETATM 13 O O06 PGV . . . E 3 33.066 6.033 -2.205 1 73.64 ? O06 PGV 404 A 1 HETATM 14 O O11 PGV . . . E 3 38.451 6.864 -2.053 1 88.02 ? O11 PGV 404 A 1 HETATM 15 O O12 PGV . . . E 3 37.067 7.751 -4.244 1 89.85 ? O12 PGV 404 A 1 HETATM 16 O O13 PGV . . . E 3 38.773 5.814 -4.428 1 90.29 ? O13 PGV 404 A 1 HETATM 17 O O14 PGV . . . E 3 39.645 8.162 -3.974 1 89.15 -1 O14 PGV 404 A 1 HETATM 18 C C1 PGV . . . E 3 35.031 6.56 0.883 1 76.94 ? C1 PGV 404 A 1 HETATM 19 C C2 PGV . . . E 3 35.535 8.004 1.099 1 66.69 ? C2 PGV 404 A 1 HETATM 20 C C3 PGV . . . E 3 35.423 8.538 2.56 1 56.01 ? C3 PGV 404 A 1 HETATM 21 C C4 PGV . . . E 3 33.968 8.94 2.978 1 57.47 ? C4 PGV 404 A 1 HETATM 22 C C5 PGV . . . E 3 33.768 9.028 4.52 1 57.1 ? C5 PGV 404 A 1 HETATM 23 C C6 PGV . . . E 3 34.58 10.181 5.187 1 52.48 ? C6 PGV 404 A 1 HETATM 24 C C7 PGV . . . E 3 34.368 10.257 6.729 1 50.06 ? C7 PGV 404 A 1 HETATM 25 C C8 PGV . . . E 3 35.629 10.71 7.525 1 58.11 ? C8 PGV 404 A 1 HETATM 26 C C9 PGV . . . E 3 35.776 10.007 8.917 1 64.75 ? C9 PGV 404 A 1 HETATM 27 C C10 PGV . . . E 3 37.182 10.175 9.569 1 70.13 ? C10 PGV 404 A 1 HETATM 28 C C11 PGV . . . E 3 37.495 9.205 10.695 1 73.35 ? C11 PGV 404 A 1 HETATM 29 C C12 PGV . . . E 3 38.633 9.284 11.442 1 74.08 ? C12 PGV 404 A 1 HETATM 30 C C13 PGV . . . E 3 38.952 8.316 12.571 1 78.03 ? C13 PGV 404 A 1 HETATM 31 C C14 PGV . . . E 3 40.237 7.445 12.359 1 78.23 ? C14 PGV 404 A 1 HETATM 32 C C15 PGV . . . E 3 41.107 7.25 13.649 1 78.07 ? C15 PGV 404 A 1 HETATM 33 C C16 PGV . . . E 3 40.966 8.413 14.683 0 76.56 ? C16 PGV 404 A 1 HETATM 34 C C17 PGV . . . E 3 41.633 8.117 16.059 0 75.52 ? C17 PGV 404 A 1 HETATM 35 C C18 PGV . . . E 3 41.781 9.391 16.917 0 75.05 ? C18 PGV 404 A 1 HETATM 36 C C19 PGV . . . E 3 39.538 6.962 0.422 1 63.69 ? C19 PGV 404 A 1 HETATM 37 C C20 PGV . . . E 3 38.928 8.021 1.38 1 54.72 ? C20 PGV 404 A 1 HETATM 38 C C21 PGV . . . E 3 39.989 8.991 2.038 1 49.24 ? C21 PGV 404 A 1 HETATM 39 C C22 PGV . . . E 3 40.068 8.854 3.601 1 47.31 ? C22 PGV 404 A 1 HETATM 40 C C23 PGV . . . E 3 41.375 8.158 4.112 1 45.18 ? C23 PGV 404 A 1 HETATM 41 C C24 PGV . . . E 3 42.066 8.903 5.303 1 50.23 ? C24 PGV 404 A 1 HETATM 42 C C25 PGV . . . E 3 41.581 8.426 6.713 1 47.92 ? C25 PGV 404 A 1 HETATM 43 C C26 PGV . . . E 3 42.742 7.987 7.666 1 53.19 ? C26 PGV 404 A 1 HETATM 44 C C27 PGV . . . E 3 42.67 8.631 9.093 1 58.2 ? C27 PGV 404 A 1 HETATM 45 C C28 PGV . . . E 3 43.8 8.146 10.063 1 63.96 ? C28 PGV 404 A 1 HETATM 46 C C29 PGV . . . E 3 43.608 8.612 11.546 1 70.12 ? C29 PGV 404 A 1 HETATM 47 C C30 PGV . . . E 3 44.865 8.38 12.452 1 71.54 ? C30 PGV 404 A 1 HETATM 48 C C31 PGV . . . E 3 44.549 8.368 13.985 1 71.38 ? C31 PGV 404 A 1 HETATM 49 C C32 PGV . . . E 3 45.782 8.699 14.886 0 70.4 ? C32 PGV 404 A 1 HETATM 50 C C33 PGV . . . E 3 46.641 9.89 14.367 0 70.2 ? C33 PGV 404 A 1 HETATM 51 C C34 PGV . . . E 3 48.144 9.723 14.676 0 69.32 ? C34 PGV 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #