data_6BRD # _model_server_result.job_id dWoV_JRLRQNehKf4LQRZDg _model_server_result.datetime_utc '2024-11-10 01:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6brd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 6BRD # _exptl.entry_id 6BRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.45 _cell.angle_gamma 90 _cell.entry_id 6BRD _cell.length_a 202.026 _cell.length_b 129.402 _cell.length_c 74.342 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,U 1 1 B,J,K,L,M,N,O,V 2 1 C,P,Q,R,S,T,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 J N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 U O HOH . A HOH 613 4_555 O MG MG . B MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc2 B OE1 GLU 129 B GLU 129 1_555 O MG MG . B MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc3 O MG MG . B MG 506 1_555 V O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 O MG MG . B MG 506 1_555 V O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6BRD _atom_sites.fract_transf_matrix[1][1] 0.00495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 501 501 FAD FAD . E 3 RFP A 1 502 502 RFP RFP . F 4 CL A 1 503 503 CL CL . G 4 CL A 1 504 504 CL CL . H 4 CL A 1 505 505 CL CL . I 4 CL A 1 506 506 CL CL . J 2 FAD B 1 501 501 FAD FAD . K 3 RFP B 1 502 502 RFP RFP . L 4 CL B 1 503 503 CL CL . M 4 CL B 1 504 504 CL CL . N 4 CL B 1 505 505 CL CL . O 5 MG B 1 506 506 MG MG . P 2 FAD C 1 501 501 FAD FAD . Q 3 RFP C 1 502 502 RFP RFP . R 4 CL C 1 503 503 CL CL . S 4 CL C 1 504 504 CL CL . T 4 CL C 1 505 505 CL CL . U 6 HOH A 1 601 601 HOH HOH . U 6 HOH A 2 602 604 HOH HOH . U 6 HOH A 3 603 602 HOH HOH . U 6 HOH A 4 604 605 HOH HOH . U 6 HOH A 5 605 606 HOH HOH . U 6 HOH A 6 606 607 HOH HOH . U 6 HOH A 7 607 608 HOH HOH . U 6 HOH A 8 608 609 HOH HOH . U 6 HOH A 9 609 610 HOH HOH . U 6 HOH A 10 610 611 HOH HOH . U 6 HOH A 11 612 613 HOH HOH . U 6 HOH A 12 613 614 HOH HOH . U 6 HOH A 13 614 603 HOH HOH . U 6 HOH A 14 615 615 HOH HOH . U 6 HOH A 15 616 616 HOH HOH . U 6 HOH A 16 617 617 HOH HOH . U 6 HOH A 17 618 618 HOH HOH . U 6 HOH A 18 619 619 HOH HOH . U 6 HOH A 19 620 620 HOH HOH . U 6 HOH A 20 621 621 HOH HOH . U 6 HOH A 21 622 622 HOH HOH . U 6 HOH A 22 623 623 HOH HOH . U 6 HOH A 23 624 629 HOH HOH . U 6 HOH A 24 625 624 HOH HOH . U 6 HOH A 25 626 625 HOH HOH . U 6 HOH A 26 627 626 HOH HOH . U 6 HOH A 27 628 627 HOH HOH . U 6 HOH A 28 629 632 HOH HOH . U 6 HOH A 29 630 628 HOH HOH . U 6 HOH A 30 631 630 HOH HOH . U 6 HOH A 31 632 631 HOH HOH . U 6 HOH A 32 633 633 HOH HOH . V 6 HOH B 1 601 602 HOH HOH . V 6 HOH B 2 602 601 HOH HOH . V 6 HOH B 3 603 603 HOH HOH . V 6 HOH B 4 604 604 HOH HOH . V 6 HOH B 5 605 605 HOH HOH . V 6 HOH B 6 606 606 HOH HOH . V 6 HOH B 7 607 607 HOH HOH . V 6 HOH B 8 608 608 HOH HOH . V 6 HOH B 9 609 609 HOH HOH . V 6 HOH B 10 610 610 HOH HOH . V 6 HOH B 11 611 611 HOH HOH . V 6 HOH B 12 612 612 HOH HOH . V 6 HOH B 13 613 613 HOH HOH . V 6 HOH B 14 614 614 HOH HOH . V 6 HOH B 15 615 615 HOH HOH . V 6 HOH B 16 616 616 HOH HOH . V 6 HOH B 17 617 617 HOH HOH . V 6 HOH B 18 618 618 HOH HOH . V 6 HOH B 19 619 619 HOH HOH . V 6 HOH B 20 620 622 HOH HOH . V 6 HOH B 21 621 620 HOH HOH . V 6 HOH B 22 622 621 HOH HOH . V 6 HOH B 23 623 623 HOH HOH . V 6 HOH B 24 624 624 HOH HOH . V 6 HOH B 25 625 625 HOH HOH . V 6 HOH B 26 626 626 HOH HOH . V 6 HOH B 27 627 627 HOH HOH . V 6 HOH B 28 628 628 HOH HOH . V 6 HOH B 29 629 629 HOH HOH . V 6 HOH B 30 630 630 HOH HOH . V 6 HOH B 31 631 631 HOH HOH . V 6 HOH B 32 632 632 HOH HOH . V 6 HOH B 33 633 633 HOH HOH . V 6 HOH B 34 634 634 HOH HOH . V 6 HOH B 35 635 635 HOH HOH . W 6 HOH C 1 601 602 HOH HOH . W 6 HOH C 2 602 603 HOH HOH . W 6 HOH C 3 603 601 HOH HOH . W 6 HOH C 4 604 604 HOH HOH . W 6 HOH C 5 605 605 HOH HOH . W 6 HOH C 6 606 610 HOH HOH . W 6 HOH C 7 607 606 HOH HOH . W 6 HOH C 8 608 607 HOH HOH . W 6 HOH C 9 609 608 HOH HOH . W 6 HOH C 10 610 609 HOH HOH . W 6 HOH C 11 611 611 HOH HOH . W 6 HOH C 12 612 612 HOH HOH . W 6 HOH C 13 613 613 HOH HOH . W 6 HOH C 14 614 614 HOH HOH . W 6 HOH C 15 615 615 HOH HOH . W 6 HOH C 16 616 616 HOH HOH . W 6 HOH C 17 617 617 HOH HOH . W 6 HOH C 18 618 618 HOH HOH . W 6 HOH C 19 619 620 HOH HOH . W 6 HOH C 20 620 621 HOH HOH . W 6 HOH C 21 621 622 HOH HOH . W 6 HOH C 22 622 623 HOH HOH . W 6 HOH C 23 623 619 HOH HOH . W 6 HOH C 24 624 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 2 17.059 18.576 -18.892 1 54.47 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . J 2 15.894 17.628 -18.629 1 61.24 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . J 2 18.146 17.827 -19.642 1 57.86 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . J 2 16.517 19.873 -19.792 1 57.86 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . J 2 17.078 20.062 -21.048 1 55.03 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . J 2 15.952 20.265 -22.121 1 50.59 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . J 2 16.431 20.99 -23.104 1 47.09 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . J 2 15.549 18.918 -22.737 1 51.79 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . J 2 14.206 18.866 -22.955 1 48.51 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . J 2 16.323 18.892 -24.077 1 57.23 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . J 2 15.668 17.981 -25.067 1 63.45 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . J 2 16.258 20.126 -24.461 1 52.82 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . J 2 17.318 20.44 -25.411 1 57.25 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . J 2 18.491 19.81 -25.527 1 59.98 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . J 2 19.185 20.396 -26.515 1 61.11 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . J 2 18.433 21.394 -27.014 1 60.79 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . J 2 18.654 22.314 -28.032 1 56.81 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . J 2 19.797 22.528 -28.938 1 53.89 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . J 2 17.727 23.215 -28.327 1 55.97 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . J 2 16.562 23.237 -27.632 1 55.2 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . J 2 16.339 22.341 -26.636 1 54.95 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . J 2 17.28 21.421 -26.332 1 58.97 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . J 2 17.564 15.095 -10.215 1 91.06 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . J 2 16.998 15.302 -8.857 1 93.37 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . J 2 17.011 16.378 -8.362 1 94.13 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . J 2 16.411 14.148 -8.121 1 95.5 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . J 2 16.401 12.829 -8.741 1 96.28 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . J 2 15.937 11.912 -8.16 1 100.48 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . J 2 16.985 12.635 -10.134 1 89.72 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . J 2 16.97 11.308 -10.753 1 84.73 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . J 2 17.543 11.106 -12.125 1 85.77 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . J 2 17.529 9.828 -12.718 1 84.56 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . J 2 18.065 9.644 -14.004 1 87.64 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . J 2 17.932 8.183 -14.423 1 88.75 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . J 2 18.614 10.734 -14.7 1 90.09 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . J 2 19.203 10.485 -16.135 1 91.6 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . J 2 18.628 12.011 -14.108 1 89.95 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . J 2 18.094 12.201 -12.821 1 89.35 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . J 2 18.112 13.573 -12.188 1 88.63 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . J 2 17.553 13.767 -10.847 1 89.81 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . J 2 18.69 14.721 -12.939 1 80.26 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . J 2 17.543 15.709 -13.34 1 68.73 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . J 2 16.601 15.077 -14.117 1 67.61 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . J 2 18.118 16.923 -14.106 1 58.69 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . J 2 19.235 17.374 -13.438 1 54.79 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . J 2 17.075 18.058 -14.183 1 59.54 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . J 2 16.191 17.811 -15.22 1 64.74 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . J 2 17.799 19.409 -14.411 1 55.92 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . J 2 16.99 20.313 -15.145 1 44.57 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . J 2 17.365 20.608 -16.748 1 37.71 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . J 2 16.189 21.347 -17.356 1 39.15 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . J 2 18.613 21.469 -16.886 1 34.16 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . J 2 17.637 19.117 -17.436 1 40.42 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 53 #