data_6BRR # _model_server_result.job_id aMoM6u_QrJrzUAPgTJgqrw _model_server_result.datetime_utc '2024-11-23 20:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6brr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1001}' # _entry.id 6BRR # _exptl.entry_id 6BRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BRR _cell.length_a 205.005 _cell.length_b 205.005 _cell.length_c 89.358 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 83 A CYS 710 1_555 F C6 PYO 6 F PYO 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale2 C SG CYS 83 D CYS 710 1_555 E C6 PYO 6 E PYO 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? covale ? covale3 E O3' DG 5 E DG 426 1_555 E P PYO 6 E PYO 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale4 E O3' PYO 6 E PYO 427 1_555 E P DG 7 E DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale5 F O3' DG 5 F DG 426 1_555 F P PYO 6 F PYO 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale6 F O3' PYO 6 F PYO 427 1_555 F P DG 7 F DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? hydrog WATSON-CRICK hydrog1 E N3 DC 2 E DC 423 1_555 F N1 DG 25 F DG 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 E N4 DC 2 E DC 423 1_555 F O6 DG 25 F DG 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 E O2 DC 2 E DC 423 1_555 F N2 DG 25 F DG 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 E N1 DA 3 E DA 424 1_555 F N3 DT 24 F DT 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 E N6 DA 3 E DA 424 1_555 F O4 DT 24 F DT 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 E N3 DT 4 E DT 425 1_555 F N1 DA 23 F DA 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 E O4 DT 4 E DT 425 1_555 F N6 DA 23 F DA 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 E N1 DG 5 E DG 426 1_555 F N3 DC 22 F DC 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 E N2 DG 5 E DG 426 1_555 F O2 DC 22 F DC 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E O6 DG 5 E DG 426 1_555 F N4 DC 22 F DC 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E N1 DG 7 E DG 428 1_555 F N3 DC 20 F DC 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N2 DG 7 E DG 428 1_555 F O2 DC 20 F DC 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E O6 DG 7 E DG 428 1_555 F N4 DC 20 F DC 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 E N3 DT 8 E DT 429 1_555 F N1 DA 19 F DA 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E O4 DT 8 E DT 429 1_555 F N6 DA 19 F DA 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N3 DT 9 E DT 430 1_555 F N1 DA 18 F DA 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E O4 DT 9 E DT 430 1_555 F N6 DA 18 F DA 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 E N3 DC 10 E DC 431 1_555 F N1 DG 17 F DG 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N4 DC 10 E DC 431 1_555 F O6 DG 17 F DG 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E O2 DC 10 E DC 431 1_555 F N2 DG 17 F DG 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 E N3 DT 11 E DT 432 1_555 F N1 DA 16 F DA 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 E O4 DT 11 E DT 432 1_555 F N6 DA 16 F DA 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 E N1 DA 12 E DA 433 1_555 F N3 DT 15 F DT 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 E N6 DA 12 E DA 433 1_555 F O4 DT 15 F DT 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 E N1 DA 13 E DA 434 1_555 F N3 DT 14 F DT 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 E N6 DA 13 E DA 434 1_555 F O4 DT 14 F DT 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 E N3 DT 14 E DT 435 1_555 F N1 DA 13 F DA 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 E O4 DT 14 E DT 435 1_555 F N6 DA 13 F DA 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 E N3 DT 15 E DT 436 1_555 F N1 DA 12 F DA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 E O4 DT 15 E DT 436 1_555 F N6 DA 12 F DA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 E N1 DA 16 E DA 437 1_555 F N3 DT 11 F DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 E N6 DA 16 E DA 437 1_555 F O4 DT 11 F DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 E N1 DG 17 E DG 438 1_555 F N3 DC 10 F DC 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 E N2 DG 17 E DG 438 1_555 F O2 DC 10 F DC 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 E O6 DG 17 E DG 438 1_555 F N4 DC 10 F DC 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 E N1 DA 18 E DA 439 1_555 F N3 DT 9 F DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 E N6 DA 18 E DA 439 1_555 F O4 DT 9 F DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 E N1 DA 19 E DA 440 1_555 F N3 DT 8 F DT 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 E N6 DA 19 E DA 440 1_555 F O4 DT 8 F DT 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 E N3 DC 20 E DC 441 1_555 F N1 DG 7 F DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 E N4 DC 20 E DC 441 1_555 F O6 DG 7 F DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 E O2 DC 20 E DC 441 1_555 F N2 DG 7 F DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog43 E O2 DC 22 E DC 443 1_555 F N2 DG 5 F DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 E N1 DA 23 E DA 444 1_555 F N3 DT 4 F DT 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 E N6 DA 23 E DA 444 1_555 F O4 DT 4 F DT 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 E N3 DT 24 E DT 445 1_555 F N1 DA 3 F DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 E O4 DT 24 E DT 445 1_555 F N6 DA 3 F DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 E N1 DG 25 E DG 446 1_555 F N3 DC 2 F DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 E N2 DG 25 E DG 446 1_555 F O2 DC 2 F DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 E O6 DG 25 E DG 446 1_555 F N4 DC 2 F DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 458 n n N HN1 SAH sing 459 n n N HN2 SAH sing 460 n n CA CB SAH sing 461 n n CA C SAH sing 462 n n CA HA SAH sing 463 n n CB CG SAH sing 464 n n CB HB1 SAH sing 465 n n CB HB2 SAH sing 466 n n CG SD SAH sing 467 n n CG HG1 SAH sing 468 n n CG HG2 SAH sing 469 n n SD C5' SAH sing 470 n n C O SAH doub 471 n n C OXT SAH sing 472 n n OXT HXT SAH sing 473 n n C5' C4' SAH sing 474 n n C5' "H5'1" SAH sing 475 n n C5' "H5'2" SAH sing 476 n n C4' O4' SAH sing 477 n n C4' C3' SAH sing 478 n n C4' H4' SAH sing 479 n n O4' C1' SAH sing 480 n n C3' O3' SAH sing 481 n n C3' C2' SAH sing 482 n n C3' H3' SAH sing 483 n n O3' HO3' SAH sing 484 n n C2' O2' SAH sing 485 n n C2' C1' SAH sing 486 n n C2' H2' SAH sing 487 n n O2' HO2' SAH sing 488 n n C1' N9 SAH sing 489 n n C1' H1' SAH sing 490 n n N9 C8 SAH sing 491 n y N9 C4 SAH sing 492 n y C8 N7 SAH doub 493 n y C8 H8 SAH sing 494 n n N7 C5 SAH sing 495 n y C5 C6 SAH sing 496 n y C5 C4 SAH doub 497 n y C6 N6 SAH sing 498 n n C6 N1 SAH doub 499 n y N6 HN61 SAH sing 500 n n N6 HN62 SAH sing 501 n n N1 C2 SAH sing 502 n y C2 N3 SAH doub 503 n y C2 H2 SAH sing 504 n n N3 C4 SAH sing 505 n y # _atom_sites.entry_id 6BRR _atom_sites.fract_transf_matrix[1][1] 0.004878 _atom_sites.fract_transf_matrix[1][2] 0.002816 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 SAH A 1 1001 1 SAH SAH . H 4 SAH D 1 1001 2 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . H 4 -30.253 -38.992 27.374 1 63.1 ? N SAH 1001 D 1 HETATM 2 C CA SAH . . . H 4 -29.841 -39.392 26.029 1 70.04 ? CA SAH 1001 D 1 HETATM 3 C CB SAH . . . H 4 -28.656 -38.565 25.521 1 87.21 ? CB SAH 1001 D 1 HETATM 4 C CG SAH . . . H 4 -28.591 -37.128 26.05 1 91.73 ? CG SAH 1001 D 1 HETATM 5 S SD SAH . . . H 4 -26.946 -36.387 25.897 1 91.78 ? SD SAH 1001 D 1 HETATM 6 C C SAH . . . H 4 -29.581 -40.895 25.92 1 72.72 ? C SAH 1001 D 1 HETATM 7 O O SAH . . . H 4 -28.744 -41.336 25.134 1 74.37 ? O SAH 1001 D 1 HETATM 8 O OXT SAH . . . H 4 -30.209 -41.706 26.609 1 74.87 ? OXT SAH 1001 D 1 HETATM 9 C C5' SAH . . . H 4 -27.587 -35.008 24.919 1 104.63 ? C5' SAH 1001 D 1 HETATM 10 C C4' SAH . . . H 4 -27.855 -35.357 23.459 1 87.04 ? C4' SAH 1001 D 1 HETATM 11 O O4' SAH . . . H 4 -28.296 -34.196 22.793 1 78.56 ? O4' SAH 1001 D 1 HETATM 12 C C3' SAH . . . H 4 -26.588 -35.799 22.733 1 81.66 ? C3' SAH 1001 D 1 HETATM 13 O O3' SAH . . . H 4 -26.731 -37.114 22.255 1 86.73 ? O3' SAH 1001 D 1 HETATM 14 C C2' SAH . . . H 4 -26.437 -34.87 21.542 1 79.51 ? C2' SAH 1001 D 1 HETATM 15 O O2' SAH . . . H 4 -26.198 -35.604 20.362 1 88.03 ? O2' SAH 1001 D 1 HETATM 16 C C1' SAH . . . H 4 -27.796 -34.199 21.473 1 74.48 ? C1' SAH 1001 D 1 HETATM 17 N N9 SAH . . . H 4 -27.783 -32.853 20.858 1 81.52 ? N9 SAH 1001 D 1 HETATM 18 C C8 SAH . . . H 4 -26.828 -31.875 20.975 1 91.9 ? C8 SAH 1001 D 1 HETATM 19 N N7 SAH . . . H 4 -27.214 -30.807 20.238 1 94.7 ? N7 SAH 1001 D 1 HETATM 20 C C5 SAH . . . H 4 -28.397 -31.094 19.659 1 92.9 ? C5 SAH 1001 D 1 HETATM 21 C C6 SAH . . . H 4 -29.205 -30.351 18.822 1 91.1 ? C6 SAH 1001 D 1 HETATM 22 N N6 SAH . . . H 4 -28.825 -29.124 18.473 1 89.53 ? N6 SAH 1001 D 1 HETATM 23 N N1 SAH . . . H 4 -30.387 -30.881 18.357 1 96.71 ? N1 SAH 1001 D 1 HETATM 24 C C2 SAH . . . H 4 -30.748 -32.157 18.739 1 104.07 ? C2 SAH 1001 D 1 HETATM 25 N N3 SAH . . . H 4 -29.935 -32.898 19.58 1 102.32 ? N3 SAH 1001 D 1 HETATM 26 C C4 SAH . . . H 4 -28.771 -32.37 20.034 1 91.71 ? C4 SAH 1001 D 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #