data_6BS2 # _model_server_result.job_id Q-mB6pBv-tu4HsOixoJ2Kg _model_server_result.datetime_utc '2025-01-11 03:10:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":504}' # _entry.id 6BS2 # _exptl.entry_id 6BS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BS2 _cell.length_a 105.101 _cell.length_b 157.602 _cell.length_c 181.509 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 M N N ? 7 R N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 G O2B GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc10 I MG MG . A MG 503 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc11 I MG MG . A MG 503 1_555 W O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 I MG MG . A MG 503 1_555 W O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc13 I MG MG . A MG 503 1_555 W O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc15 J O2A GDP . B GDP 501 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc16 M MG MG . B MG 504 1_555 X O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc17 M MG MG . B MG 504 1_555 X O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc18 M MG MG . B MG 504 1_555 Y O HOH . C HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc21 C O THR 41 C THR 41 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc23 C O GLY 44 C GLY 44 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc26 O O3G GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc27 O O2B GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc28 P CA CA . C CA 502 1_555 Y O HOH . C HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc29 R MG MG . C MG 504 1_555 Y O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc30 R MG MG . C MG 504 1_555 Y O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc31 R MG MG . C MG 504 1_555 Y O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc32 F OE2 GLU 331 F GLU 331 1_555 U MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc33 U MG MG . F MG 401 1_555 V O3G ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BS2 _atom_sites.fract_transf_matrix[1][1] 0.009515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 CA A 1 502 1 CA CA . I 7 MG A 1 503 1 MG MG . J 8 GDP B 1 501 501 GDP GDP . K 9 MES B 1 502 1 MES MES . L 9 MES B 1 503 2 MES MES . M 7 MG B 1 504 2 MG MG . N 10 E9Y B 1 505 3 E9Y 9GK . O 5 GTP C 1 501 501 GTP GTP . P 6 CA C 1 502 2 CA CA . Q 9 MES C 1 503 3 MES MES . R 7 MG C 1 504 3 MG MG . S 8 GDP D 1 501 1 GDP GDP . T 10 E9Y D 1 502 4 E9Y 9GK . U 7 MG F 1 401 4 MG MG . V 11 ACP F 1 402 1 ACP ACP . W 12 HOH A 1 601 737 HOH HOH . W 12 HOH A 2 602 759 HOH HOH . W 12 HOH A 3 603 750 HOH HOH . W 12 HOH A 4 604 752 HOH HOH . W 12 HOH A 5 605 761 HOH HOH . W 12 HOH A 6 606 94 HOH HOH . W 12 HOH A 7 607 285 HOH HOH . W 12 HOH A 8 608 755 HOH HOH . W 12 HOH A 9 609 738 HOH HOH . W 12 HOH A 10 610 739 HOH HOH . W 12 HOH A 11 611 27 HOH HOH . W 12 HOH A 12 612 753 HOH HOH . W 12 HOH A 13 613 42 HOH HOH . W 12 HOH A 14 614 156 HOH HOH . W 12 HOH A 15 615 6 HOH HOH . W 12 HOH A 16 616 757 HOH HOH . W 12 HOH A 17 617 754 HOH HOH . W 12 HOH A 18 618 756 HOH HOH . W 12 HOH A 19 619 39 HOH HOH . W 12 HOH A 20 620 758 HOH HOH . W 12 HOH A 21 621 109 HOH HOH . W 12 HOH A 22 622 81 HOH HOH . W 12 HOH A 23 623 63 HOH HOH . W 12 HOH A 24 624 740 HOH HOH . W 12 HOH A 25 625 748 HOH HOH . W 12 HOH A 26 626 108 HOH HOH . W 12 HOH A 27 627 90 HOH HOH . W 12 HOH A 28 628 358 HOH HOH . W 12 HOH A 29 629 751 HOH HOH . W 12 HOH A 30 630 31 HOH HOH . W 12 HOH A 31 631 93 HOH HOH . W 12 HOH A 32 632 71 HOH HOH . W 12 HOH A 33 633 288 HOH HOH . W 12 HOH A 34 634 760 HOH HOH . W 12 HOH A 35 635 371 HOH HOH . W 12 HOH A 36 636 37 HOH HOH . W 12 HOH A 37 637 749 HOH HOH . W 12 HOH A 38 638 236 HOH HOH . W 12 HOH A 39 639 715 HOH HOH . W 12 HOH A 40 640 1 HOH HOH . X 12 HOH B 1 601 767 HOH HOH . X 12 HOH B 2 602 733 HOH HOH . X 12 HOH B 3 603 146 HOH HOH . X 12 HOH B 4 604 116 HOH HOH . X 12 HOH B 5 605 4 HOH HOH . X 12 HOH B 6 606 801 HOH HOH . X 12 HOH B 7 607 275 HOH HOH . X 12 HOH B 8 608 137 HOH HOH . X 12 HOH B 9 609 735 HOH HOH . X 12 HOH B 10 610 734 HOH HOH . X 12 HOH B 11 611 800 HOH HOH . X 12 HOH B 12 612 762 HOH HOH . X 12 HOH B 13 613 5 HOH HOH . X 12 HOH B 14 614 386 HOH HOH . X 12 HOH B 15 615 743 HOH HOH . X 12 HOH B 16 616 111 HOH HOH . X 12 HOH B 17 617 736 HOH HOH . X 12 HOH B 18 618 86 HOH HOH . X 12 HOH B 19 619 12 HOH HOH . X 12 HOH B 20 620 170 HOH HOH . X 12 HOH B 21 621 763 HOH HOH . X 12 HOH B 22 622 92 HOH HOH . X 12 HOH B 23 623 110 HOH HOH . X 12 HOH B 24 624 732 HOH HOH . X 12 HOH B 25 625 769 HOH HOH . X 12 HOH B 26 626 421 HOH HOH . X 12 HOH B 27 627 244 HOH HOH . X 12 HOH B 28 628 802 HOH HOH . X 12 HOH B 29 629 768 HOH HOH . X 12 HOH B 30 630 419 HOH HOH . X 12 HOH B 31 631 413 HOH HOH . X 12 HOH B 32 632 766 HOH HOH . X 12 HOH B 33 633 203 HOH HOH . X 12 HOH B 34 634 764 HOH HOH . X 12 HOH B 35 635 716 HOH HOH . X 12 HOH B 36 636 717 HOH HOH . X 12 HOH B 37 637 765 HOH HOH . Y 12 HOH C 1 601 26 HOH HOH . Y 12 HOH C 2 602 779 HOH HOH . Y 12 HOH C 3 603 784 HOH HOH . Y 12 HOH C 4 604 454 HOH HOH . Y 12 HOH C 5 605 730 HOH HOH . Y 12 HOH C 6 606 729 HOH HOH . Y 12 HOH C 7 607 774 HOH HOH . Y 12 HOH C 8 608 728 HOH HOH . Y 12 HOH C 9 609 787 HOH HOH . Y 12 HOH C 10 610 232 HOH HOH . Y 12 HOH C 11 611 780 HOH HOH . Y 12 HOH C 12 612 40 HOH HOH . Y 12 HOH C 13 613 775 HOH HOH . Y 12 HOH C 14 614 207 HOH HOH . Y 12 HOH C 15 615 786 HOH HOH . Y 12 HOH C 16 616 274 HOH HOH . Y 12 HOH C 17 617 219 HOH HOH . Y 12 HOH C 18 618 771 HOH HOH . Y 12 HOH C 19 619 21 HOH HOH . Y 12 HOH C 20 620 746 HOH HOH . Y 12 HOH C 21 621 778 HOH HOH . Y 12 HOH C 22 622 745 HOH HOH . Y 12 HOH C 23 623 166 HOH HOH . Y 12 HOH C 24 624 782 HOH HOH . Y 12 HOH C 25 625 262 HOH HOH . Y 12 HOH C 26 626 127 HOH HOH . Y 12 HOH C 27 627 781 HOH HOH . Y 12 HOH C 28 628 744 HOH HOH . Y 12 HOH C 29 629 770 HOH HOH . Y 12 HOH C 30 630 178 HOH HOH . Y 12 HOH C 31 631 141 HOH HOH . Y 12 HOH C 32 632 3 HOH HOH . Y 12 HOH C 33 633 65 HOH HOH . Y 12 HOH C 34 634 772 HOH HOH . Y 12 HOH C 35 635 49 HOH HOH . Y 12 HOH C 36 636 390 HOH HOH . Y 12 HOH C 37 637 190 HOH HOH . Y 12 HOH C 38 638 64 HOH HOH . Y 12 HOH C 39 639 57 HOH HOH . Y 12 HOH C 40 640 783 HOH HOH . Y 12 HOH C 41 641 747 HOH HOH . Y 12 HOH C 42 642 773 HOH HOH . Y 12 HOH C 43 643 28 HOH HOH . Y 12 HOH C 44 644 310 HOH HOH . Y 12 HOH C 45 645 189 HOH HOH . Y 12 HOH C 46 646 249 HOH HOH . Y 12 HOH C 47 647 789 HOH HOH . Y 12 HOH C 48 648 788 HOH HOH . Y 12 HOH C 49 649 731 HOH HOH . Y 12 HOH C 50 650 776 HOH HOH . Y 12 HOH C 51 651 77 HOH HOH . Y 12 HOH C 52 652 785 HOH HOH . Y 12 HOH C 53 653 803 HOH HOH . Y 12 HOH C 54 654 777 HOH HOH . Y 12 HOH C 55 655 149 HOH HOH . Y 12 HOH C 56 656 363 HOH HOH . Z 12 HOH D 1 601 794 HOH HOH . Z 12 HOH D 2 602 38 HOH HOH . Z 12 HOH D 3 603 793 HOH HOH . Z 12 HOH D 4 604 257 HOH HOH . Z 12 HOH D 5 605 791 HOH HOH . Z 12 HOH D 6 606 796 HOH HOH . Z 12 HOH D 7 607 25 HOH HOH . Z 12 HOH D 8 608 795 HOH HOH . Z 12 HOH D 9 609 790 HOH HOH . Z 12 HOH D 10 610 9 HOH HOH . Z 12 HOH D 11 611 741 HOH HOH . Z 12 HOH D 12 612 35 HOH HOH . Z 12 HOH D 13 613 792 HOH HOH . Z 12 HOH D 14 614 182 HOH HOH . Z 12 HOH D 15 615 96 HOH HOH . Z 12 HOH D 16 616 8 HOH HOH . Z 12 HOH D 17 617 66 HOH HOH . Z 12 HOH D 18 618 727 HOH HOH . Z 12 HOH D 19 619 307 HOH HOH . Z 12 HOH D 20 620 114 HOH HOH . Z 12 HOH D 21 621 721 HOH HOH . Z 12 HOH D 22 622 477 HOH HOH . Z 12 HOH D 23 623 188 HOH HOH . AA 12 HOH E 1 201 198 HOH HOH . AA 12 HOH E 2 202 175 HOH HOH . BA 12 HOH F 1 501 140 HOH HOH . BA 12 HOH F 2 502 798 HOH HOH . BA 12 HOH F 3 503 799 HOH HOH . BA 12 HOH F 4 504 341 HOH HOH . BA 12 HOH F 5 505 130 HOH HOH . BA 12 HOH F 6 506 159 HOH HOH . BA 12 HOH F 7 507 797 HOH HOH . BA 12 HOH F 8 508 53 HOH HOH . BA 12 HOH F 9 509 225 HOH HOH . BA 12 HOH F 10 510 719 HOH HOH . BA 12 HOH F 11 511 466 HOH HOH . BA 12 HOH F 12 512 246 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 7 _atom_site.Cartn_x 18.597 _atom_site.Cartn_y -20.037 _atom_site.Cartn_z 19.18 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 504 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #