data_6BS3 # _model_server_result.job_id CHeEgf7gmPKc46t21IDDfQ _model_server_result.datetime_utc '2025-03-05 19:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bs3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 6BS3 # _exptl.entry_id 6BS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BS3 _cell.length_a 121.34 _cell.length_b 121.34 _cell.length_c 120.973 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 35 A SER 35 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 C O1B ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 D MG MG . A MG 402 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 D MG MG . A MG 402 1_555 J O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 D MG MG . A MG 402 1_555 J O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc6 D MG MG . A MG 402 1_555 J O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 B OG1 THR 33 B THR 33 1_555 I MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc8 B OD1 ASP 56 B ASP 56 1_555 I MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc9 B O LEU 165 B LEU 165 1_555 H CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc10 E O2B ADP . B ADP 401 1_555 I MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc11 G CA CA . B CA 403 1_555 K O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc12 H CA CA . B CA 404 1_555 K O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc13 I MG MG . B MG 405 1_555 K O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc14 I MG MG . B MG 405 1_555 K O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 I MG MG . B MG 405 1_555 K O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BS3 _atom_sites.fract_transf_matrix[1][1] 0.008241 _atom_sites.fract_transf_matrix[1][2] 0.004758 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 401 1 ADP ADP . D 4 MG A 1 402 1 MG MG . E 3 ADP B 1 401 2 ADP ADP . F 5 IMD B 1 402 1 IMD IMD . G 6 CA B 1 403 1 CA CA . H 6 CA B 1 404 2 CA CA . I 4 MG B 1 405 2 MG MG . J 7 HOH A 1 501 15 HOH HOH . J 7 HOH A 2 502 11 HOH HOH . J 7 HOH A 3 503 125 HOH HOH . J 7 HOH A 4 504 173 HOH HOH . J 7 HOH A 5 505 17 HOH HOH . J 7 HOH A 6 506 178 HOH HOH . J 7 HOH A 7 507 90 HOH HOH . J 7 HOH A 8 508 30 HOH HOH . J 7 HOH A 9 509 64 HOH HOH . J 7 HOH A 10 510 14 HOH HOH . J 7 HOH A 11 511 16 HOH HOH . J 7 HOH A 12 512 110 HOH HOH . J 7 HOH A 13 513 12 HOH HOH . J 7 HOH A 14 514 201 HOH HOH . J 7 HOH A 15 515 258 HOH HOH . J 7 HOH A 16 516 18 HOH HOH . J 7 HOH A 17 517 80 HOH HOH . J 7 HOH A 18 518 112 HOH HOH . J 7 HOH A 19 519 65 HOH HOH . J 7 HOH A 20 520 74 HOH HOH . J 7 HOH A 21 521 45 HOH HOH . J 7 HOH A 22 522 221 HOH HOH . J 7 HOH A 23 523 19 HOH HOH . J 7 HOH A 24 524 196 HOH HOH . J 7 HOH A 25 525 46 HOH HOH . J 7 HOH A 26 526 182 HOH HOH . J 7 HOH A 27 527 21 HOH HOH . J 7 HOH A 28 528 233 HOH HOH . J 7 HOH A 29 529 88 HOH HOH . J 7 HOH A 30 530 148 HOH HOH . J 7 HOH A 31 531 222 HOH HOH . J 7 HOH A 32 532 164 HOH HOH . J 7 HOH A 33 533 116 HOH HOH . J 7 HOH A 34 534 188 HOH HOH . J 7 HOH A 35 535 81 HOH HOH . J 7 HOH A 36 536 54 HOH HOH . J 7 HOH A 37 537 241 HOH HOH . J 7 HOH A 38 538 251 HOH HOH . J 7 HOH A 39 539 61 HOH HOH . J 7 HOH A 40 540 50 HOH HOH . J 7 HOH A 41 541 9 HOH HOH . J 7 HOH A 42 542 129 HOH HOH . J 7 HOH A 43 543 42 HOH HOH . J 7 HOH A 44 544 246 HOH HOH . J 7 HOH A 45 545 68 HOH HOH . J 7 HOH A 46 546 52 HOH HOH . J 7 HOH A 47 547 36 HOH HOH . J 7 HOH A 48 548 183 HOH HOH . J 7 HOH A 49 549 207 HOH HOH . J 7 HOH A 50 550 177 HOH HOH . J 7 HOH A 51 551 145 HOH HOH . J 7 HOH A 52 552 132 HOH HOH . J 7 HOH A 53 553 24 HOH HOH . J 7 HOH A 54 554 37 HOH HOH . J 7 HOH A 55 555 41 HOH HOH . J 7 HOH A 56 556 59 HOH HOH . J 7 HOH A 57 557 238 HOH HOH . J 7 HOH A 58 558 117 HOH HOH . J 7 HOH A 59 559 91 HOH HOH . J 7 HOH A 60 560 226 HOH HOH . J 7 HOH A 61 561 140 HOH HOH . J 7 HOH A 62 562 193 HOH HOH . J 7 HOH A 63 563 77 HOH HOH . J 7 HOH A 64 564 33 HOH HOH . J 7 HOH A 65 565 67 HOH HOH . J 7 HOH A 66 566 32 HOH HOH . J 7 HOH A 67 567 189 HOH HOH . J 7 HOH A 68 568 147 HOH HOH . J 7 HOH A 69 569 243 HOH HOH . J 7 HOH A 70 570 100 HOH HOH . J 7 HOH A 71 571 27 HOH HOH . J 7 HOH A 72 572 184 HOH HOH . J 7 HOH A 73 573 108 HOH HOH . J 7 HOH A 74 574 185 HOH HOH . J 7 HOH A 75 575 104 HOH HOH . J 7 HOH A 76 576 204 HOH HOH . J 7 HOH A 77 577 242 HOH HOH . J 7 HOH A 78 578 38 HOH HOH . J 7 HOH A 79 579 131 HOH HOH . J 7 HOH A 80 580 20 HOH HOH . J 7 HOH A 81 581 44 HOH HOH . J 7 HOH A 82 582 144 HOH HOH . J 7 HOH A 83 583 48 HOH HOH . J 7 HOH A 84 584 58 HOH HOH . J 7 HOH A 85 585 170 HOH HOH . J 7 HOH A 86 586 106 HOH HOH . J 7 HOH A 87 587 113 HOH HOH . J 7 HOH A 88 588 115 HOH HOH . J 7 HOH A 89 589 138 HOH HOH . J 7 HOH A 90 590 214 HOH HOH . J 7 HOH A 91 591 89 HOH HOH . J 7 HOH A 92 592 206 HOH HOH . J 7 HOH A 93 593 141 HOH HOH . J 7 HOH A 94 594 174 HOH HOH . J 7 HOH A 95 595 98 HOH HOH . J 7 HOH A 96 596 95 HOH HOH . J 7 HOH A 97 597 66 HOH HOH . J 7 HOH A 98 598 175 HOH HOH . J 7 HOH A 99 599 167 HOH HOH . J 7 HOH A 100 600 219 HOH HOH . J 7 HOH A 101 601 22 HOH HOH . J 7 HOH A 102 602 192 HOH HOH . J 7 HOH A 103 603 220 HOH HOH . J 7 HOH A 104 604 124 HOH HOH . J 7 HOH A 105 605 245 HOH HOH . J 7 HOH A 106 606 133 HOH HOH . J 7 HOH A 107 607 118 HOH HOH . J 7 HOH A 108 608 227 HOH HOH . J 7 HOH A 109 609 257 HOH HOH . J 7 HOH A 110 610 202 HOH HOH . J 7 HOH A 111 611 198 HOH HOH . J 7 HOH A 112 612 154 HOH HOH . J 7 HOH A 113 613 56 HOH HOH . J 7 HOH A 114 614 121 HOH HOH . J 7 HOH A 115 615 171 HOH HOH . J 7 HOH A 116 616 256 HOH HOH . J 7 HOH A 117 617 97 HOH HOH . J 7 HOH A 118 618 250 HOH HOH . J 7 HOH A 119 619 149 HOH HOH . J 7 HOH A 120 620 244 HOH HOH . J 7 HOH A 121 621 162 HOH HOH . J 7 HOH A 122 622 254 HOH HOH . J 7 HOH A 123 623 208 HOH HOH . J 7 HOH A 124 624 157 HOH HOH . J 7 HOH A 125 625 213 HOH HOH . J 7 HOH A 126 626 234 HOH HOH . J 7 HOH A 127 627 239 HOH HOH . J 7 HOH A 128 628 166 HOH HOH . K 7 HOH B 1 501 160 HOH HOH . K 7 HOH B 2 502 23 HOH HOH . K 7 HOH B 3 503 10 HOH HOH . K 7 HOH B 4 504 8 HOH HOH . K 7 HOH B 5 505 13 HOH HOH . K 7 HOH B 6 506 143 HOH HOH . K 7 HOH B 7 507 71 HOH HOH . K 7 HOH B 8 508 39 HOH HOH . K 7 HOH B 9 509 69 HOH HOH . K 7 HOH B 10 510 83 HOH HOH . K 7 HOH B 11 511 195 HOH HOH . K 7 HOH B 12 512 176 HOH HOH . K 7 HOH B 13 513 186 HOH HOH . K 7 HOH B 14 514 128 HOH HOH . K 7 HOH B 15 515 134 HOH HOH . K 7 HOH B 16 516 53 HOH HOH . K 7 HOH B 17 517 26 HOH HOH . K 7 HOH B 18 518 137 HOH HOH . K 7 HOH B 19 519 223 HOH HOH . K 7 HOH B 20 520 231 HOH HOH . K 7 HOH B 21 521 51 HOH HOH . K 7 HOH B 22 522 217 HOH HOH . K 7 HOH B 23 523 197 HOH HOH . K 7 HOH B 24 524 237 HOH HOH . K 7 HOH B 25 525 78 HOH HOH . K 7 HOH B 26 526 210 HOH HOH . K 7 HOH B 27 527 55 HOH HOH . K 7 HOH B 28 528 43 HOH HOH . K 7 HOH B 29 529 79 HOH HOH . K 7 HOH B 30 530 103 HOH HOH . K 7 HOH B 31 531 180 HOH HOH . K 7 HOH B 32 532 29 HOH HOH . K 7 HOH B 33 533 75 HOH HOH . K 7 HOH B 34 534 194 HOH HOH . K 7 HOH B 35 535 28 HOH HOH . K 7 HOH B 36 536 111 HOH HOH . K 7 HOH B 37 537 70 HOH HOH . K 7 HOH B 38 538 142 HOH HOH . K 7 HOH B 39 539 84 HOH HOH . K 7 HOH B 40 540 86 HOH HOH . K 7 HOH B 41 541 31 HOH HOH . K 7 HOH B 42 542 120 HOH HOH . K 7 HOH B 43 543 73 HOH HOH . K 7 HOH B 44 544 190 HOH HOH . K 7 HOH B 45 545 63 HOH HOH . K 7 HOH B 46 546 127 HOH HOH . K 7 HOH B 47 547 130 HOH HOH . K 7 HOH B 48 548 158 HOH HOH . K 7 HOH B 49 549 107 HOH HOH . K 7 HOH B 50 550 62 HOH HOH . K 7 HOH B 51 551 60 HOH HOH . K 7 HOH B 52 552 205 HOH HOH . K 7 HOH B 53 553 93 HOH HOH . K 7 HOH B 54 554 163 HOH HOH . K 7 HOH B 55 555 35 HOH HOH . K 7 HOH B 56 556 181 HOH HOH . K 7 HOH B 57 557 123 HOH HOH . K 7 HOH B 58 558 155 HOH HOH . K 7 HOH B 59 559 82 HOH HOH . K 7 HOH B 60 560 122 HOH HOH . K 7 HOH B 61 561 101 HOH HOH . K 7 HOH B 62 562 47 HOH HOH . K 7 HOH B 63 563 94 HOH HOH . K 7 HOH B 64 564 57 HOH HOH . K 7 HOH B 65 565 102 HOH HOH . K 7 HOH B 66 566 85 HOH HOH . K 7 HOH B 67 567 119 HOH HOH . K 7 HOH B 68 568 151 HOH HOH . K 7 HOH B 69 569 34 HOH HOH . K 7 HOH B 70 570 49 HOH HOH . K 7 HOH B 71 571 218 HOH HOH . K 7 HOH B 72 572 215 HOH HOH . K 7 HOH B 73 573 96 HOH HOH . K 7 HOH B 74 574 153 HOH HOH . K 7 HOH B 75 575 152 HOH HOH . K 7 HOH B 76 576 99 HOH HOH . K 7 HOH B 77 577 76 HOH HOH . K 7 HOH B 78 578 105 HOH HOH . K 7 HOH B 79 579 172 HOH HOH . K 7 HOH B 80 580 72 HOH HOH . K 7 HOH B 81 581 159 HOH HOH . K 7 HOH B 82 582 168 HOH HOH . K 7 HOH B 83 583 191 HOH HOH . K 7 HOH B 84 584 248 HOH HOH . K 7 HOH B 85 585 249 HOH HOH . K 7 HOH B 86 586 92 HOH HOH . K 7 HOH B 87 587 224 HOH HOH . K 7 HOH B 88 588 169 HOH HOH . K 7 HOH B 89 589 216 HOH HOH . K 7 HOH B 90 590 135 HOH HOH . K 7 HOH B 91 591 236 HOH HOH . K 7 HOH B 92 592 126 HOH HOH . K 7 HOH B 93 593 150 HOH HOH . K 7 HOH B 94 594 211 HOH HOH . K 7 HOH B 95 595 146 HOH HOH . K 7 HOH B 96 596 235 HOH HOH . K 7 HOH B 97 597 179 HOH HOH . K 7 HOH B 98 598 232 HOH HOH . K 7 HOH B 99 599 199 HOH HOH . K 7 HOH B 100 600 109 HOH HOH . K 7 HOH B 101 601 225 HOH HOH . K 7 HOH B 102 602 212 HOH HOH . K 7 HOH B 103 603 209 HOH HOH . K 7 HOH B 104 604 230 HOH HOH . K 7 HOH B 105 605 187 HOH HOH . K 7 HOH B 106 606 114 HOH HOH . K 7 HOH B 107 607 25 HOH HOH . K 7 HOH B 108 608 200 HOH HOH . K 7 HOH B 109 609 139 HOH HOH . K 7 HOH B 110 610 87 HOH HOH . K 7 HOH B 111 611 247 HOH HOH . K 7 HOH B 112 612 229 HOH HOH . K 7 HOH B 113 613 161 HOH HOH . K 7 HOH B 114 614 252 HOH HOH . K 7 HOH B 115 615 136 HOH HOH . K 7 HOH B 116 616 156 HOH HOH . K 7 HOH B 117 617 203 HOH HOH . K 7 HOH B 118 618 228 HOH HOH . K 7 HOH B 119 619 165 HOH HOH . K 7 HOH B 120 620 253 HOH HOH . K 7 HOH B 121 621 255 HOH HOH . K 7 HOH B 122 622 240 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 55.237 _atom_site.Cartn_y 31.06 _atom_site.Cartn_z 12.036 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 93.9 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #