data_6BSI # _model_server_result.job_id ojHPrqImqocO6eZChRJRZg _model_server_result.datetime_utc '2024-11-24 21:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 6BSI # _exptl.entry_id 6BSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BSI _cell.length_a 163.85 _cell.length_b 163.85 _cell.length_c 129.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O3' A 2 R A 4 1_555 D P 3DR 3 R 3DR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale2 D O3' 3DR 3 R 3DR 5 1_555 D P G 4 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? metalc ? metalc1 A OD1 ASP 444 A ASP 443 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc2 A OE1 GLU 479 A GLU 478 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc3 A OD2 ASP 499 A ASP 498 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.119 ? hydrog WATSON-CRICK hydrog1 C N3 DT 2 D DT 3 1_555 D N1 A 25 R A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C O4 DT 2 D DT 3 1_555 D N6 A 25 R A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-A PAIR' hydrog3 C O4 DT 3 D DT 4 1_555 D N6 A 24 R A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 4 D DT 5 1_555 D N1 A 23 R A 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 4 D DT 5 1_555 D N6 A 23 R A 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-A PAIR' hydrog6 C N3 DT 5 D DT 6 1_555 D N1 A 22 R A 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N3 DT 6 D DT 7 1_555 D N1 A 21 R A 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O4 DT 6 D DT 7 1_555 D N6 A 21 R A 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DC 7 D DC 8 1_555 D N1 G 20 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 DC 7 D DC 8 1_555 D O6 G 20 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 DC 7 D DC 8 1_555 D N2 G 20 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N3 DT 8 D DT 9 1_555 D N1 A 19 R A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O4 DT 8 D DT 9 1_555 D N6 A 19 R A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-A PAIR' hydrog14 C O4 DT 10 D DT 11 1_555 D N6 A 18 R A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-A PAIR' hydrog15 C O2 DT 11 D DT 12 1_555 D N6 A 16 R A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 DG 12 D DG 13 1_555 D N3 C 15 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 DG 12 D DG 13 1_555 D O2 C 15 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 DG 12 D DG 13 1_555 D N4 C 15 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DT 13 D DT 14 1_555 D N1 A 14 R A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 DT 13 D DT 14 1_555 D N6 A 14 R A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N3 DT 14 D DT 15 1_555 D N1 A 13 R A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O4 DT 14 D DT 15 1_555 D N6 A 13 R A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DA 15 D DA 16 1_555 D N3 U 12 R U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N6 DA 15 D DA 16 1_555 D O4 U 12 R U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DT 16 D DT 17 1_555 D N1 A 11 R A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O4 DT 16 D DT 17 1_555 D N6 A 11 R A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DT 17 D DT 18 1_555 D N1 A 10 R A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O4 DT 17 D DT 18 1_555 D N6 A 10 R A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N1 DG 18 D DG 19 1_555 D N3 C 9 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N2 DG 18 D DG 19 1_555 D O2 C 9 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O6 DG 18 D DG 19 1_555 D N4 C 9 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N3 DT 19 D DT 20 1_555 D N1 A 8 R A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O4 DT 19 D DT 20 1_555 D N6 A 8 R A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N1 DG 20 D DG 21 1_555 D N3 C 7 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N2 DG 20 D DG 21 1_555 D O2 C 7 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C O6 DG 20 D DG 21 1_555 D N4 C 7 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N1 DG 21 D DG 22 1_555 D N3 C 6 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N2 DG 21 D DG 22 1_555 D O2 C 6 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O6 DG 21 D DG 22 1_555 D N4 C 6 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N3 DC 22 D DC 23 1_555 D N1 G 5 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C N4 DC 22 D DC 23 1_555 D O6 G 5 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C O2 DC 22 D DC 23 1_555 D N2 G 5 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N3 DC 23 D DC 24 1_555 D N1 G 4 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C N4 DC 23 D DC 24 1_555 D O6 G 4 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 C O2 DC 23 D DC 24 1_555 D N2 G 4 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 448 n n C1 C2 GOL sing 449 n n C1 H11 GOL sing 450 n n C1 H12 GOL sing 451 n n O1 HO1 GOL sing 452 n n C2 O2 GOL sing 453 n n C2 C3 GOL sing 454 n n C2 H2 GOL sing 455 n n O2 HO2 GOL sing 456 n n C3 O3 GOL sing 457 n n C3 H31 GOL sing 458 n n C3 H32 GOL sing 459 n n O3 HO3 GOL sing 460 n n # _atom_sites.entry_id 6BSI _atom_sites.fract_transf_matrix[1][1] 0.006103 _atom_sites.fract_transf_matrix[1][2] 0.003524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 EFZ A 1 601 999 EFZ EFZ . F 6 CA A 1 602 2 CA CA . G 6 CA D 1 101 1 CA CA . H 7 GOL D 1 102 1 GOL GOL . I 7 GOL R 1 101 2 GOL GOL . J 8 HOH A 1 701 9 HOH HOH . J 8 HOH A 2 702 7 HOH HOH . J 8 HOH A 3 703 8 HOH HOH . J 8 HOH A 4 704 1 HOH HOH . K 8 HOH B 1 501 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 -87.979 -33.802 0.471 1 131.54 ? C1 GOL 102 D 1 HETATM 2 O O1 GOL . . . H 7 -87.491 -34.144 -0.817 1 126.94 ? O1 GOL 102 D 1 HETATM 3 C C2 GOL . . . H 7 -86.842 -33.309 1.37 1 122.53 ? C2 GOL 102 D 1 HETATM 4 O O2 GOL . . . H 7 -87.168 -32.117 2.065 1 106.6 ? O2 GOL 102 D 1 HETATM 5 C C3 GOL . . . H 7 -86.503 -34.397 2.373 1 120.77 ? C3 GOL 102 D 1 HETATM 6 O O3 GOL . . . H 7 -85.76 -33.797 3.41 1 127.89 ? O3 GOL 102 D 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #