data_6BT5 # _model_server_result.job_id -SzSLZ23cWqhONICGIIM6A _model_server_result.datetime_utc '2024-11-13 06:25:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6BT5 # _exptl.entry_id 6BT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BT5 _cell.length_a 113.65 _cell.length_b 166.008 _cell.length_c 196.038 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 64 1_555 A SG CYS 70 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 333 A CYS 369 1_555 A SG CYS 348 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 388 A CYS 424 1_555 A SG CYS 395 A CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 28 B CYS 64 1_555 B SG CYS 70 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 333 B CYS 369 1_555 B SG CYS 348 B CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 388 B CYS 424 1_555 B SG CYS 395 B CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 59 A ASN 95 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B ND2 ASN 59 B ASN 95 1_555 F C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 257 n n C1 O1 NAG sing 258 n n C1 O5 NAG sing 259 n n C1 H1 NAG sing 260 n n C2 C3 NAG sing 261 n n C2 N2 NAG sing 262 n n C2 H2 NAG sing 263 n n C3 C4 NAG sing 264 n n C3 O3 NAG sing 265 n n C3 H3 NAG sing 266 n n C4 C5 NAG sing 267 n n C4 O4 NAG sing 268 n n C4 H4 NAG sing 269 n n C5 C6 NAG sing 270 n n C5 O5 NAG sing 271 n n C5 H5 NAG sing 272 n n C6 O6 NAG sing 273 n n C6 H61 NAG sing 274 n n C6 H62 NAG sing 275 n n C7 C8 NAG sing 276 n n C7 N2 NAG sing 277 n n C7 O7 NAG doub 278 n n C8 H81 NAG sing 279 n n C8 H82 NAG sing 280 n n C8 H83 NAG sing 281 n n N2 HN2 NAG sing 282 n n O1 HO1 NAG sing 283 n n O3 HO3 NAG sing 284 n n O4 HO4 NAG sing 285 n n O6 HO6 NAG sing 286 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6BT5 _atom_sites.fract_transf_matrix[1][1] 0.008799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E7P A 1 601 1 E7P SX1 . D 3 NAG A 1 602 1 NAG NAG . E 2 E7P B 1 601 2 E7P SX1 . F 3 NAG B 1 602 2 NAG NAG . G 4 HOH A 1 701 50 HOH HOH . G 4 HOH A 2 702 18 HOH HOH . G 4 HOH A 3 703 10 HOH HOH . G 4 HOH A 4 704 43 HOH HOH . G 4 HOH A 5 705 42 HOH HOH . G 4 HOH A 6 706 11 HOH HOH . G 4 HOH A 7 707 5 HOH HOH . G 4 HOH A 8 708 60 HOH HOH . G 4 HOH A 9 709 53 HOH HOH . G 4 HOH A 10 710 30 HOH HOH . G 4 HOH A 11 711 71 HOH HOH . G 4 HOH A 12 712 23 HOH HOH . G 4 HOH A 13 713 8 HOH HOH . G 4 HOH A 14 714 34 HOH HOH . G 4 HOH A 15 715 14 HOH HOH . G 4 HOH A 16 716 15 HOH HOH . G 4 HOH A 17 717 22 HOH HOH . G 4 HOH A 18 718 58 HOH HOH . G 4 HOH A 19 719 68 HOH HOH . G 4 HOH A 20 720 65 HOH HOH . G 4 HOH A 21 721 21 HOH HOH . G 4 HOH A 22 722 25 HOH HOH . G 4 HOH A 23 723 56 HOH HOH . G 4 HOH A 24 724 41 HOH HOH . G 4 HOH A 25 725 40 HOH HOH . G 4 HOH A 26 726 36 HOH HOH . G 4 HOH A 27 727 69 HOH HOH . G 4 HOH A 28 728 7 HOH HOH . G 4 HOH A 29 729 4 HOH HOH . G 4 HOH A 30 730 45 HOH HOH . G 4 HOH A 31 731 19 HOH HOH . G 4 HOH A 32 732 44 HOH HOH . G 4 HOH A 33 733 20 HOH HOH . G 4 HOH A 34 734 13 HOH HOH . G 4 HOH A 35 735 35 HOH HOH . G 4 HOH A 36 736 6 HOH HOH . G 4 HOH A 37 737 2 HOH HOH . G 4 HOH A 38 738 17 HOH HOH . G 4 HOH A 39 739 70 HOH HOH . G 4 HOH A 40 740 57 HOH HOH . G 4 HOH A 41 741 67 HOH HOH . G 4 HOH A 42 742 33 HOH HOH . G 4 HOH A 43 743 59 HOH HOH . G 4 HOH A 44 744 32 HOH HOH . H 4 HOH B 1 701 66 HOH HOH . H 4 HOH B 2 702 37 HOH HOH . H 4 HOH B 3 703 55 HOH HOH . H 4 HOH B 4 704 64 HOH HOH . H 4 HOH B 5 705 49 HOH HOH . H 4 HOH B 6 706 38 HOH HOH . H 4 HOH B 7 707 24 HOH HOH . H 4 HOH B 8 708 72 HOH HOH . H 4 HOH B 9 709 63 HOH HOH . H 4 HOH B 10 710 62 HOH HOH . H 4 HOH B 11 711 48 HOH HOH . H 4 HOH B 12 712 54 HOH HOH . H 4 HOH B 13 713 73 HOH HOH . H 4 HOH B 14 714 28 HOH HOH . H 4 HOH B 15 715 51 HOH HOH . H 4 HOH B 16 716 52 HOH HOH . H 4 HOH B 17 717 47 HOH HOH . H 4 HOH B 18 718 16 HOH HOH . H 4 HOH B 19 719 9 HOH HOH . H 4 HOH B 20 720 12 HOH HOH . H 4 HOH B 21 721 1 HOH HOH . H 4 HOH B 22 722 31 HOH HOH . H 4 HOH B 23 723 39 HOH HOH . H 4 HOH B 24 724 3 HOH HOH . H 4 HOH B 25 725 26 HOH HOH . H 4 HOH B 26 726 61 HOH HOH . H 4 HOH B 27 727 46 HOH HOH . H 4 HOH B 28 728 29 HOH HOH . H 4 HOH B 29 729 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 19.731 -18.166 41.42 1 48.6 ? C1 NAG 602 B 1 HETATM 2 C C2 NAG . . . F 3 20.195 -16.728 41.169 1 49.1 ? C2 NAG 602 B 1 HETATM 3 C C3 NAG . . . F 3 20.513 -16.001 42.477 1 49.23 ? C3 NAG 602 B 1 HETATM 4 C C4 NAG . . . F 3 19.438 -16.217 43.545 1 49.26 ? C4 NAG 602 B 1 HETATM 5 C C5 NAG . . . F 3 19.059 -17.699 43.646 1 49.14 ? C5 NAG 602 B 1 HETATM 6 C C6 NAG . . . F 3 17.94 -17.95 44.659 1 49.26 ? C6 NAG 602 B 1 HETATM 7 C C7 NAG . . . F 3 21.465 -15.943 39.218 1 49.19 ? C7 NAG 602 B 1 HETATM 8 C C8 NAG . . . F 3 22.749 -16.056 38.452 1 49.11 ? C8 NAG 602 B 1 HETATM 9 N N2 NAG . . . F 3 21.366 -16.709 40.307 1 49.12 ? N2 NAG 602 B 1 HETATM 10 O O3 NAG . . . F 3 20.651 -14.62 42.222 1 49.39 ? O3 NAG 602 B 1 HETATM 11 O O4 NAG . . . F 3 19.919 -15.741 44.784 1 49.39 ? O4 NAG 602 B 1 HETATM 12 O O5 NAG . . . F 3 18.678 -18.187 42.37 1 48.86 ? O5 NAG 602 B 1 HETATM 13 O O6 NAG . . . F 3 16.686 -17.583 44.125 1 49.48 ? O6 NAG 602 B 1 HETATM 14 O O7 NAG . . . F 3 20.583 -15.177 38.826 1 49.22 ? O7 NAG 602 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #