data_6BTL
#
_model_server_result.job_id            3Z2SU7bLQU8rAfVYk_5G4A 
_model_server_result.datetime_utc      '2024-12-02 15:08:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6btl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":504}' 
#
_entry.id    6BTL 
#
_exptl.entry_id    6BTL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              463.681 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[2-(piperazin-1-yl)ethyl]-5-{5-[1-(pyrrolidin-1-yl)cyclohexyl]-1,3-thiazol-2-yl}-1H-indole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BTL 
_cell.length_a            117.664 
_cell.length_b            117.664 
_cell.length_c            225.163 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BTL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 117.664 -117.664 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 52 1_555 A SG CYS 60 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 55 B CYS 52 1_555 B SG CYS 60 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C27 H37 N5 S' 
_chem_comp.formula_weight    463.681 
_chem_comp.id                RD7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[2-(piperazin-1-yl)ethyl]-5-{5-[1-(pyrrolidin-1-yl)cyclohexyl]-1,3-thiazol-2-yl}-1H-indole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBD NBE RD7 sing 414 n n 
CBD CBC RD7 sing 415 n n 
CBF NBE RD7 sing 416 n n 
CBF CBG RD7 sing 417 n n 
NBB CBC RD7 sing 418 n n 
NBB CBG RD7 sing 419 n n 
NBB CBA RD7 sing 420 n n 
CAZ CBA RD7 sing 421 n n 
CAZ NAV RD7 sing 422 n n 
CAX CAY RD7 doub 423 n y 
CAX CAW RD7 sing 424 n y 
CAY CAQ RD7 sing 425 n y 
NAV CAW RD7 sing 426 n y 
NAV CAU RD7 sing 427 n y 
CAW CAS RD7 doub 428 n y 
NAO CAN RD7 sing 429 n y 
NAO CAP RD7 doub 430 n y 
CAJ CAI RD7 sing 431 n n 
CAJ CAK RD7 sing 432 n n 
CAQ CAP RD7 sing 433 n n 
CAQ CAR RD7 doub 434 n y 
CAI CAH RD7 sing 435 n n 
CAN CAL RD7 doub 436 n y 
CAU CAT RD7 doub 437 n y 
CAP SAM RD7 sing 438 n y 
CAS CAR RD7 sing 439 n y 
CAS CAT RD7 sing 440 n y 
CAK NAG RD7 sing 441 n n 
CAH NAG RD7 sing 442 n n 
CAL SAM RD7 sing 443 n y 
CAL CAF RD7 sing 444 n n 
NAG CAF RD7 sing 445 n n 
CAF CAE RD7 sing 446 n n 
CAF CAA RD7 sing 447 n n 
CAE CAD RD7 sing 448 n n 
CAA CAB RD7 sing 449 n n 
CAD CAC RD7 sing 450 n n 
CAB CAC RD7 sing 451 n n 
CAA H1 RD7 sing 452 n n 
CAA H2 RD7 sing 453 n n 
CAB H3 RD7 sing 454 n n 
CAB H4 RD7 sing 455 n n 
CAC H5 RD7 sing 456 n n 
CAC H6 RD7 sing 457 n n 
CAD H7 RD7 sing 458 n n 
CAD H8 RD7 sing 459 n n 
CAE H9 RD7 sing 460 n n 
CAE H10 RD7 sing 461 n n 
CAH H11 RD7 sing 462 n n 
CAH H12 RD7 sing 463 n n 
CAI H13 RD7 sing 464 n n 
CAI H14 RD7 sing 465 n n 
CAJ H15 RD7 sing 466 n n 
CAJ H16 RD7 sing 467 n n 
CAK H17 RD7 sing 468 n n 
CAK H18 RD7 sing 469 n n 
CAN H19 RD7 sing 470 n n 
CAR H20 RD7 sing 471 n n 
CAT H21 RD7 sing 472 n n 
CAU H22 RD7 sing 473 n n 
CAX H23 RD7 sing 474 n n 
CAY H24 RD7 sing 475 n n 
CAZ H25 RD7 sing 476 n n 
CAZ H26 RD7 sing 477 n n 
CBA H27 RD7 sing 478 n n 
CBA H28 RD7 sing 479 n n 
CBC H29 RD7 sing 480 n n 
CBC H30 RD7 sing 481 n n 
CBD H31 RD7 sing 482 n n 
CBD H32 RD7 sing 483 n n 
CBF H33 RD7 sing 484 n n 
CBF H34 RD7 sing 485 n n 
CBG H35 RD7 sing 486 n n 
CBG H36 RD7 sing 487 n n 
NBE H39 RD7 sing 488 n n 
#
_atom_sites.entry_id                     6BTL 
_atom_sites.fract_transf_matrix[1][1]    0.008499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 3 SO4 A 1 502 503 SO4 SO4 . 
E 3 SO4 A 1 503 504 SO4 SO4 . 
F 3 SO4 A 1 504 505 SO4 SO4 . 
G 4 RD7 A 1 505 999 RD7 RD7 . 
H 5 GOL A 1 506 2 GOL GOL . 
I 3 SO4 A 1 507 1 SO4 SO4 . 
J 2 FAD B 1 501 501 FAD FAD . 
K 3 SO4 B 1 502 507 SO4 SO4 . 
L 6 EPE B 1 503 508 EPE EPE . 
M 4 RD7 B 1 504 999 RD7 RD7 . 
N 6 EPE B 1 505 1 EPE EPE . 
O 5 GOL B 1 506 1 GOL GOL . 
P 5 GOL B 1 507 3 GOL GOL . 
Q 5 GOL B 1 508 11 GOL GOL . 
R 7 HOH A 1 601 5 HOH HOH . 
R 7 HOH A 2 602 7 HOH HOH . 
R 7 HOH A 3 603 9 HOH HOH . 
R 7 HOH A 4 604 8 HOH HOH . 
S 7 HOH B 1 601 2 HOH HOH . 
S 7 HOH B 2 602 6 HOH HOH . 
S 7 HOH B 3 603 4 HOH HOH . 
S 7 HOH B 4 604 3 HOH HOH . 
S 7 HOH B 5 605 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA RD7 . . . M 4 9.702 -5.896 13.937 1 132.33 ? CAA RD7 504 B 1 
HETATM 2 C CAB RD7 . . . M 4 9.254 -7.143 13.192 1 135.53 ? CAB RD7 504 B 1 
HETATM 3 C CAC RD7 . . . M 4 10.471 -7.968 12.806 1 135.78 ? CAC RD7 504 B 1 
HETATM 4 C CAD RD7 . . . M 4 11.383 -7.14 11.916 1 131.57 ? CAD RD7 504 B 1 
HETATM 5 C CAE RD7 . . . M 4 11.826 -5.893 12.663 1 131.74 ? CAE RD7 504 B 1 
HETATM 6 C CAF RD7 . . . M 4 10.607 -5.069 13.04 1 129.82 ? CAF RD7 504 B 1 
HETATM 7 C CAH RD7 . . . M 4 9.813 -3.125 14.202 1 107.75 ? CAH RD7 504 B 1 
HETATM 8 C CAI RD7 . . . M 4 10.272 -1.684 14.364 1 102.93 ? CAI RD7 504 B 1 
HETATM 9 C CAJ RD7 . . . M 4 11.433 -1.531 13.388 1 101.91 ? CAJ RD7 504 B 1 
HETATM 10 C CAK RD7 . . . M 4 11.571 -2.894 12.727 1 110.53 ? CAK RD7 504 B 1 
HETATM 11 C CAL RD7 . . . M 4 9.848 -4.698 11.777 1 135.4 ? CAL RD7 504 B 1 
HETATM 12 C CAN RD7 . . . M 4 10.411 -4.405 10.6 1 148.68 ? CAN RD7 504 B 1 
HETATM 13 C CAP RD7 . . . M 4 8.246 -4.175 10.079 1 135.45 ? CAP RD7 504 B 1 
HETATM 14 C CAQ RD7 . . . M 4 7.168 -3.931 9.339 1 138.7 ? CAQ RD7 504 B 1 
HETATM 15 C CAR RD7 . . . M 4 5.916 -4.365 9.753 1 149.46 ? CAR RD7 504 B 1 
HETATM 16 C CAS RD7 . . . M 4 4.841 -4.117 9.006 1 158.73 ? CAS RD7 504 B 1 
HETATM 17 C CAT RD7 . . . M 4 3.559 -4.425 9.189 1 163.91 ? CAT RD7 504 B 1 
HETATM 18 C CAU RD7 . . . M 4 2.867 -3.955 8.157 1 163.93 ? CAU RD7 504 B 1 
HETATM 19 C CAW RD7 . . . M 4 4.941 -3.452 7.853 1 160.25 ? CAW RD7 504 B 1 
HETATM 20 C CAX RD7 . . . M 4 6.118 -3.013 7.41 1 151.64 ? CAX RD7 504 B 1 
HETATM 21 C CAY RD7 . . . M 4 7.276 -3.24 8.142 1 143.41 ? CAY RD7 504 B 1 
HETATM 22 C CAZ RD7 . . . M 4 3.372 -2.692 6.057 1 157.38 ? CAZ RD7 504 B 1 
HETATM 23 C CBA RD7 . . . M 4 2.116 -3.312 5.443 1 155.87 ? CBA RD7 504 B 1 
HETATM 24 C CBC RD7 . . . M 4 1.456 -5.412 4.484 1 145.66 ? CBC RD7 504 B 1 
HETATM 25 C CBD RD7 . . . M 4 1.747 -6.465 3.427 1 141.43 ? CBD RD7 504 B 1 
HETATM 26 C CBF RD7 . . . M 4 2.802 -4.799 2.058 1 139.06 ? CBF RD7 504 B 1 
HETATM 27 C CBG RD7 . . . M 4 2.511 -3.746 3.114 1 142.64 ? CBG RD7 504 B 1 
HETATM 28 N NAG RD7 . . . M 4 11.008 -3.825 13.713 1 120.42 ? NAG RD7 504 B 1 
HETATM 29 N NAO RD7 . . . M 4 9.508 -4.111 9.643 1 140.24 ? NAO RD7 504 B 1 
HETATM 30 N NAV RD7 . . . M 4 3.72 -3.355 7.334 1 160.04 ? NAV RD7 504 B 1 
HETATM 31 N NBB RD7 . . . M 4 2.466 -4.344 4.456 1 148.45 ? NBB RD7 504 B 1 
HETATM 32 N NBE RD7 . . . M 4 1.792 -5.866 2.085 1 138.66 ? NBE RD7 504 B 1 
HETATM 33 S SAM RD7 . . . M 4 8.226 -4.597 11.653 1 130.76 ? SAM RD7 504 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#