data_6BTL # _model_server_result.job_id sFdkV6aMXfM_l8vcTtIIHQ _model_server_result.datetime_utc '2024-12-02 14:15:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6btl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 6BTL # _exptl.entry_id 6BTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.681 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-(piperazin-1-yl)ethyl]-5-{5-[1-(pyrrolidin-1-yl)cyclohexyl]-1,3-thiazol-2-yl}-1H-indole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BTL _cell.length_a 117.664 _cell.length_b 117.664 _cell.length_c 225.163 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 117.664 -117.664 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 52 1_555 A SG CYS 60 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 55 B CYS 52 1_555 B SG CYS 60 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C27 H37 N5 S' _chem_comp.formula_weight 463.681 _chem_comp.id RD7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-(piperazin-1-yl)ethyl]-5-{5-[1-(pyrrolidin-1-yl)cyclohexyl]-1,3-thiazol-2-yl}-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD NBE RD7 sing 414 n n CBD CBC RD7 sing 415 n n CBF NBE RD7 sing 416 n n CBF CBG RD7 sing 417 n n NBB CBC RD7 sing 418 n n NBB CBG RD7 sing 419 n n NBB CBA RD7 sing 420 n n CAZ CBA RD7 sing 421 n n CAZ NAV RD7 sing 422 n n CAX CAY RD7 doub 423 n y CAX CAW RD7 sing 424 n y CAY CAQ RD7 sing 425 n y NAV CAW RD7 sing 426 n y NAV CAU RD7 sing 427 n y CAW CAS RD7 doub 428 n y NAO CAN RD7 sing 429 n y NAO CAP RD7 doub 430 n y CAJ CAI RD7 sing 431 n n CAJ CAK RD7 sing 432 n n CAQ CAP RD7 sing 433 n n CAQ CAR RD7 doub 434 n y CAI CAH RD7 sing 435 n n CAN CAL RD7 doub 436 n y CAU CAT RD7 doub 437 n y CAP SAM RD7 sing 438 n y CAS CAR RD7 sing 439 n y CAS CAT RD7 sing 440 n y CAK NAG RD7 sing 441 n n CAH NAG RD7 sing 442 n n CAL SAM RD7 sing 443 n y CAL CAF RD7 sing 444 n n NAG CAF RD7 sing 445 n n CAF CAE RD7 sing 446 n n CAF CAA RD7 sing 447 n n CAE CAD RD7 sing 448 n n CAA CAB RD7 sing 449 n n CAD CAC RD7 sing 450 n n CAB CAC RD7 sing 451 n n CAA H1 RD7 sing 452 n n CAA H2 RD7 sing 453 n n CAB H3 RD7 sing 454 n n CAB H4 RD7 sing 455 n n CAC H5 RD7 sing 456 n n CAC H6 RD7 sing 457 n n CAD H7 RD7 sing 458 n n CAD H8 RD7 sing 459 n n CAE H9 RD7 sing 460 n n CAE H10 RD7 sing 461 n n CAH H11 RD7 sing 462 n n CAH H12 RD7 sing 463 n n CAI H13 RD7 sing 464 n n CAI H14 RD7 sing 465 n n CAJ H15 RD7 sing 466 n n CAJ H16 RD7 sing 467 n n CAK H17 RD7 sing 468 n n CAK H18 RD7 sing 469 n n CAN H19 RD7 sing 470 n n CAR H20 RD7 sing 471 n n CAT H21 RD7 sing 472 n n CAU H22 RD7 sing 473 n n CAX H23 RD7 sing 474 n n CAY H24 RD7 sing 475 n n CAZ H25 RD7 sing 476 n n CAZ H26 RD7 sing 477 n n CBA H27 RD7 sing 478 n n CBA H28 RD7 sing 479 n n CBC H29 RD7 sing 480 n n CBC H30 RD7 sing 481 n n CBD H31 RD7 sing 482 n n CBD H32 RD7 sing 483 n n CBF H33 RD7 sing 484 n n CBF H34 RD7 sing 485 n n CBG H35 RD7 sing 486 n n CBG H36 RD7 sing 487 n n NBE H39 RD7 sing 488 n n # _atom_sites.entry_id 6BTL _atom_sites.fract_transf_matrix[1][1] 0.008499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 SO4 A 1 502 503 SO4 SO4 . E 3 SO4 A 1 503 504 SO4 SO4 . F 3 SO4 A 1 504 505 SO4 SO4 . G 4 RD7 A 1 505 999 RD7 RD7 . H 5 GOL A 1 506 2 GOL GOL . I 3 SO4 A 1 507 1 SO4 SO4 . J 2 FAD B 1 501 501 FAD FAD . K 3 SO4 B 1 502 507 SO4 SO4 . L 6 EPE B 1 503 508 EPE EPE . M 4 RD7 B 1 504 999 RD7 RD7 . N 6 EPE B 1 505 1 EPE EPE . O 5 GOL B 1 506 1 GOL GOL . P 5 GOL B 1 507 3 GOL GOL . Q 5 GOL B 1 508 11 GOL GOL . R 7 HOH A 1 601 5 HOH HOH . R 7 HOH A 2 602 7 HOH HOH . R 7 HOH A 3 603 9 HOH HOH . R 7 HOH A 4 604 8 HOH HOH . S 7 HOH B 1 601 2 HOH HOH . S 7 HOH B 2 602 6 HOH HOH . S 7 HOH B 3 603 4 HOH HOH . S 7 HOH B 4 604 3 HOH HOH . S 7 HOH B 5 605 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RD7 . . . G 4 53.84 -26.924 10.377 1 150.05 ? CAA RD7 505 A 1 HETATM 2 C CAB RD7 . . . G 4 52.766 -27.356 11.363 1 150.2 ? CAB RD7 505 A 1 HETATM 3 C CAC RD7 . . . G 4 51.882 -26.167 11.703 1 149.46 ? CAC RD7 505 A 1 HETATM 4 C CAD RD7 . . . G 4 51.232 -25.639 10.434 1 146.31 ? CAD RD7 505 A 1 HETATM 5 C CAE RD7 . . . G 4 52.31 -25.213 9.451 1 147.21 ? CAE RD7 505 A 1 HETATM 6 C CAF RD7 . . . G 4 53.185 -26.407 9.109 1 148.55 ? CAF RD7 505 A 1 HETATM 7 C CAH RD7 . . . G 4 53.283 -28.38 7.742 1 137.43 ? CAH RD7 505 A 1 HETATM 8 C CAI RD7 . . . G 4 52.374 -29.051 6.724 1 135.13 ? CAI RD7 505 A 1 HETATM 9 C CAJ RD7 . . . G 4 51.236 -28.061 6.502 1 133.93 ? CAJ RD7 505 A 1 HETATM 10 C CAK RD7 . . . G 4 51.563 -26.881 7.403 1 136.13 ? CAK RD7 505 A 1 HETATM 11 C CAL RD7 . . . G 4 54.269 -25.963 8.138 1 157.12 ? CAL RD7 505 A 1 HETATM 12 C CAN RD7 . . . G 4 54.066 -25.615 6.864 1 156.35 ? CAN RD7 505 A 1 HETATM 13 C CAP RD7 . . . G 4 56.283 -25.339 7.007 1 168.35 ? CAP RD7 505 A 1 HETATM 14 C CAQ RD7 . . . G 4 57.523 -25.047 6.626 1 169.05 ? CAQ RD7 505 A 1 HETATM 15 C CAR RD7 . . . G 4 58.584 -25.188 7.509 1 163.74 ? CAR RD7 505 A 1 HETATM 16 C CAS RD7 . . . G 4 59.823 -24.894 7.12 1 159.55 ? CAS RD7 505 A 1 HETATM 17 C CAT RD7 . . . G 4 60.981 -24.948 7.774 1 157.58 ? CAT RD7 505 A 1 HETATM 18 C CAU RD7 . . . G 4 61.944 -24.551 6.949 1 161.07 ? CAU RD7 505 A 1 HETATM 19 C CAW RD7 . . . G 4 60.072 -24.461 5.882 1 159.83 ? CAW RD7 505 A 1 HETATM 20 C CAX RD7 . . . G 4 59.091 -24.309 4.995 1 163.6 ? CAX RD7 505 A 1 HETATM 21 C CAY RD7 . . . G 4 57.777 -24.598 5.339 1 163.31 ? CAY RD7 505 A 1 HETATM 22 C CAZ RD7 . . . G 4 62.092 -23.767 4.578 1 161.19 ? CAZ RD7 505 A 1 HETATM 23 C CBA RD7 . . . G 4 62.308 -22.253 4.64 1 159.47 ? CBA RD7 505 A 1 HETATM 24 C CBC RD7 . . . G 4 63.212 -20.322 3.536 1 161.45 ? CBC RD7 505 A 1 HETATM 25 C CBD RD7 . . . G 4 64.104 -19.81 2.417 1 162.92 ? CBD RD7 505 A 1 HETATM 26 C CBF RD7 . . . G 4 65.363 -21.853 2.485 1 157.67 ? CBF RD7 505 A 1 HETATM 27 C CBG RD7 . . . G 4 64.47 -22.366 3.604 1 157.27 ? CBG RD7 505 A 1 HETATM 28 N NAG RD7 . . . G 4 52.392 -27.464 8.466 1 140.76 ? NAG RD7 505 A 1 HETATM 29 N NAO RD7 . . . G 4 55.2 -25.263 6.227 1 158.25 ? NAO RD7 505 A 1 HETATM 30 N NAV RD7 . . . G 4 61.382 -24.251 5.782 1 161.99 ? NAV RD7 505 A 1 HETATM 31 N NBB RD7 . . . G 4 63.121 -21.789 3.507 1 159.69 ? NBB RD7 505 A 1 HETATM 32 N NBE RD7 . . . G 4 65.453 -20.386 2.513 1 160.55 ? NBE RD7 505 A 1 HETATM 33 S SAM RD7 . . . G 4 55.854 -25.842 8.497 1 169.11 ? SAM RD7 505 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #