data_6BTX # _model_server_result.job_id tsXli-mBPHg8DhvCpAIoQQ _model_server_result.datetime_utc '2025-03-29 13:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6btx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6BTX # _exptl.entry_id 6BTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.6 _cell.angle_gamma 90 _cell.entry_id 6BTX _cell.length_a 57.072 _cell.length_b 54.109 _cell.length_c 72.442 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 84 A GLN 84 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A OD1 ASN 196 A ASN 196 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A NE2 HIS 261 A HIS 261 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc4 D N3 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 D O18 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 D N8 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 D O13 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 272 n n C10 C9 OLC doub 273 n n C10 C11 OLC sing 274 n n C9 C8 OLC sing 275 n n C17 C16 OLC sing 276 z n C11 C12 OLC sing 277 n n C8 C7 OLC sing 278 n n C24 C22 OLC sing 279 n n C24 O25 OLC sing 280 n n C16 C15 OLC sing 281 n n C12 C13 OLC sing 282 n n C7 C6 OLC sing 283 n n C15 C14 OLC sing 284 n n C13 C14 OLC sing 285 n n C6 C5 OLC sing 286 n n C5 C4 OLC sing 287 n n C4 C3 OLC sing 288 n n C3 C2 OLC sing 289 n n C2 C1 OLC sing 290 n n C21 C22 OLC sing 291 n n C21 O20 OLC sing 292 n n C1 O19 OLC doub 293 n n C1 O20 OLC sing 294 n n C22 O23 OLC sing 295 n n C18 H18 OLC sing 296 n n C18 H18A OLC sing 297 n n C18 H18B OLC sing 298 n n C10 H10 OLC sing 299 n n C9 H9 OLC sing 300 n n C17 H17 OLC sing 301 n n C17 H17A OLC sing 302 n n C11 H11 OLC sing 303 n n C11 H11A OLC sing 304 n n C8 H8 OLC sing 305 n n C8 H8A OLC sing 306 n n C24 H24 OLC sing 307 n n C24 H24A OLC sing 308 n n C16 H16 OLC sing 309 n n C16 H16A OLC sing 310 n n C12 H12 OLC sing 311 n n C12 H12A OLC sing 312 n n C7 H7 OLC sing 313 n n C7 H7A OLC sing 314 n n C15 H15 OLC sing 315 n n C15 H15A OLC sing 316 n n C13 H13 OLC sing 317 n n C13 H13A OLC sing 318 n n C6 H6 OLC sing 319 n n C6 H6A OLC sing 320 n n C14 H14 OLC sing 321 n n C14 H14A OLC sing 322 n n C5 H5 OLC sing 323 n n C5 H5A OLC sing 324 n n C4 H4 OLC sing 325 n n C4 H4A OLC sing 326 n n C3 H3 OLC sing 327 n n C3 H3A OLC sing 328 n n C2 H2 OLC sing 329 n n C2 H2A OLC sing 330 n n C21 H21 OLC sing 331 n n C21 H21A OLC sing 332 n n C22 H22 OLC sing 333 n n O25 HO25 OLC sing 334 n n O23 HO23 OLC sing 335 n n # _atom_sites.entry_id 6BTX _atom_sites.fract_transf_matrix[1][1] 0.017522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004239 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 3 OLC A 1 502 1 OLC OLC . D 4 EDT A 1 503 1513 EDT EDT . E 5 NI A 1 504 1 NI NI . F 6 HOH A 1 601 3 HOH HOH . F 6 HOH A 2 602 2 HOH HOH . F 6 HOH A 3 603 7 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 1 HOH HOH . F 6 HOH A 6 606 6 HOH HOH . F 6 HOH A 7 607 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . C 3 -41.168 -30.775 27.899 1 36.07 ? C10 OLC 502 A 1 HETATM 2 C C9 OLC . . . C 3 -41.949 -31.831 27.604 1 35.58 ? C9 OLC 502 A 1 HETATM 3 C C11 OLC . . . C 3 -40.108 -30.316 26.922 1 35.05 ? C11 OLC 502 A 1 HETATM 4 C C8 OLC . . . C 3 -42.737 -32.53 28.689 1 34.58 ? C8 OLC 502 A 1 HETATM 5 C C24 OLC . . . C 3 -54.608 -29.683 32.682 1 48.2 ? C24 OLC 502 A 1 HETATM 6 C C16 OLC . . . C 3 -34.403 -29.806 27.445 1 34.07 ? C16 OLC 502 A 1 HETATM 7 C C12 OLC . . . C 3 -39.306 -29.207 27.569 1 34.7 ? C12 OLC 502 A 1 HETATM 8 C C7 OLC . . . C 3 -43.344 -31.508 29.623 1 34.52 ? C7 OLC 502 A 1 HETATM 9 C C15 OLC . . . C 3 -35.589 -29.18 26.746 1 34.17 ? C15 OLC 502 A 1 HETATM 10 C C13 OLC . . . C 3 -38.046 -28.945 26.774 1 34.74 ? C13 OLC 502 A 1 HETATM 11 C C6 OLC . . . C 3 -44.261 -32.214 30.596 1 35.24 ? C6 OLC 502 A 1 HETATM 12 C C14 OLC . . . C 3 -36.842 -29.416 27.56 1 33.97 ? C14 OLC 502 A 1 HETATM 13 C C5 OLC . . . C 3 -45.698 -31.853 30.289 1 36.56 ? C5 OLC 502 A 1 HETATM 14 C C4 OLC . . . C 3 -46.215 -30.892 31.337 1 37.62 ? C4 OLC 502 A 1 HETATM 15 C C3 OLC . . . C 3 -47.599 -31.324 31.774 1 38.49 ? C3 OLC 502 A 1 HETATM 16 C C2 OLC . . . C 3 -48.644 -30.398 31.19 1 41.89 ? C2 OLC 502 A 1 HETATM 17 C C21 OLC . . . C 3 -52.168 -30.041 32.493 1 44.94 ? C21 OLC 502 A 1 HETATM 18 C C1 OLC . . . C 3 -49.978 -30.644 31.864 1 44.01 ? C1 OLC 502 A 1 HETATM 19 C C22 OLC . . . C 3 -53.319 -29.142 32.103 1 47.6 ? C22 OLC 502 A 1 HETATM 20 O O19 OLC . . . C 3 -50.181 -31.701 32.429 1 44.45 ? O19 OLC 502 A 1 HETATM 21 O O25 OLC . . . C 3 -54.669 -29.381 34.059 1 46.28 ? O25 OLC 502 A 1 HETATM 22 O O23 OLC . . . C 3 -53.096 -27.847 32.607 1 48.02 ? O23 OLC 502 A 1 HETATM 23 O O20 OLC . . . C 3 -51.005 -29.684 31.782 1 44.39 ? O20 OLC 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #