data_6BTX # _model_server_result.job_id 2ebHb6-o3vCHOehKM5mU6A _model_server_result.datetime_utc '2025-03-29 14:16:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6btx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6BTX # _exptl.entry_id 6BTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.243 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.6 _cell.angle_gamma 90 _cell.entry_id 6BTX _cell.length_a 57.072 _cell.length_b 54.109 _cell.length_c 72.442 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 84 A GLN 84 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A OD1 ASN 196 A ASN 196 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A NE2 HIS 261 A HIS 261 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc4 D N3 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 D O18 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 D N8 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 D O13 EDT . A EDT 503 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'C10 H16 N2 O8' _chem_comp.formula_weight 292.243 _chem_comp.id EDT _chem_comp.mon_nstd_flag . _chem_comp.name '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C5 EDT sing 83 n n O20 H20 EDT sing 84 n n C5 O19 EDT doub 85 n n C5 C4 EDT sing 86 n n C4 N3 EDT sing 87 n n C4 H041 EDT sing 88 n n C4 H042 EDT sing 89 n n N3 C2 EDT sing 90 n n N3 C6 EDT sing 91 n n C2 C1 EDT sing 92 n n C2 H021 EDT sing 93 n n C2 H022 EDT sing 94 n n C1 O18 EDT doub 95 n n C1 O17 EDT sing 96 n n O17 H17 EDT sing 97 n n C6 C7 EDT sing 98 n n C6 H061 EDT sing 99 n n C6 H062 EDT sing 100 n n C7 N8 EDT sing 101 n n C7 H071 EDT sing 102 n n C7 H072 EDT sing 103 n n N8 C9 EDT sing 104 n n N8 C11 EDT sing 105 n n C9 C10 EDT sing 106 n n C9 H091 EDT sing 107 n n C9 H092 EDT sing 108 n n C10 O16 EDT sing 109 n n C10 O15 EDT doub 110 n n O16 H16 EDT sing 111 n n C11 C12 EDT sing 112 n n C11 H111 EDT sing 113 n n C11 H112 EDT sing 114 n n C12 O13 EDT doub 115 n n C12 O14 EDT sing 116 n n O14 H14 EDT sing 117 n n # _atom_sites.entry_id 6BTX _atom_sites.fract_transf_matrix[1][1] 0.017522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004239 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 3 OLC A 1 502 1 OLC OLC . D 4 EDT A 1 503 1513 EDT EDT . E 5 NI A 1 504 1 NI NI . F 6 HOH A 1 601 3 HOH HOH . F 6 HOH A 2 602 2 HOH HOH . F 6 HOH A 3 603 7 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 1 HOH HOH . F 6 HOH A 6 606 6 HOH HOH . F 6 HOH A 7 607 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 EDT . . . D 4 -40.832 -17.099 55.76 1 39.58 ? O20 EDT 503 A 1 HETATM 2 C C5 EDT . . . D 4 -40.635 -18.332 55.645 1 40.99 ? C5 EDT 503 A 1 HETATM 3 O O19 EDT . . . D 4 -41.21 -18.982 54.719 1 40.99 ? O19 EDT 503 A 1 HETATM 4 C C4 EDT . . . D 4 -39.711 -19.053 56.607 1 43.24 ? C4 EDT 503 A 1 HETATM 5 N N3 EDT . . . D 4 -38.52 -18.287 56.808 1 43.37 ? N3 EDT 503 A 1 HETATM 6 C C2 EDT . B . D 4 -37.384 -19.173 56.886 1 43.88 ? C2 EDT 503 A 1 HETATM 7 C C1 EDT . B . D 4 -36.298 -18.712 55.9 1 44.05 ? C1 EDT 503 A 1 HETATM 8 O O18 EDT . B . D 4 -36.355 -17.541 55.405 1 42.52 ? O18 EDT 503 A 1 HETATM 9 O O17 EDT . B . D 4 -35.355 -19.489 55.583 1 45.57 ? O17 EDT 503 A 1 HETATM 10 C C6 EDT . . . D 4 -38.685 -17.495 58.02 1 43.62 ? C6 EDT 503 A 1 HETATM 11 C C7 EDT . . . D 4 -37.357 -17.198 58.735 1 43.32 ? C7 EDT 503 A 1 HETATM 12 N N8 EDT . . . D 4 -36.817 -15.927 58.294 1 42.14 ? N8 EDT 503 A 1 HETATM 13 C C9 EDT . . . D 4 -35.356 -16.056 58.152 1 41.23 ? C9 EDT 503 A 1 HETATM 14 C C10 EDT . . . D 4 -34.768 -14.81 57.551 1 40.41 ? C10 EDT 503 A 1 HETATM 15 O O16 EDT . . . D 4 -34.337 -13.896 58.291 1 39.58 ? O16 EDT 503 A 1 HETATM 16 O O15 EDT . . . D 4 -34.7 -14.691 56.304 1 40.59 ? O15 EDT 503 A 1 HETATM 17 C C11 EDT . . . D 4 -37.125 -14.925 59.32 1 41.11 ? C11 EDT 503 A 1 HETATM 18 C C12 EDT . . . D 4 -38.23 -13.976 58.818 1 39.32 ? C12 EDT 503 A 1 HETATM 19 O O13 EDT . . . D 4 -38.304 -13.673 57.585 1 38.13 ? O13 EDT 503 A 1 HETATM 20 O O14 EDT . . . D 4 -39.059 -13.491 59.637 1 39.1 ? O14 EDT 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #