data_6BV6
#
_model_server_result.job_id            '_dxuVPC6QRBOnNIl2-4PuQ' 
_model_server_result.datetime_utc      '2024-10-20 13:05:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6BV6 
#
_exptl.entry_id    6BV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.153 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-hydroxynaphthalene-1,4-dione 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BV6 
_cell.length_a            41.738 
_cell.length_b            112.215 
_cell.length_c            139.206 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 275 A CYS 346 1_555 B CAG JUG . A JUG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? 
covale ? covale2 A SG CYS 282 A CYS 353 1_555 C CAG JUG . A JUG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? 
metalc ? metalc1 A SG CYS 273 A CYS 344 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc2 A SG CYS 276 A CYS 347 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc3 A NE2 HIS 477 A HIS 548 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 A SG CYS 494 A CYS 565 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C10 H6 O3' 
_chem_comp.formula_weight    174.153 
_chem_comp.id                JUG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-hydroxynaphthalene-1,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Juglone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAJ JUG doub 173 n n 
CAH CAD JUG doub 174 n y 
CAH CAL JUG sing 175 n y 
CAJ CAL JUG sing 176 n n 
CAJ CAF JUG sing 177 n n 
CAD CAE JUG sing 178 n y 
CAL CAM JUG doub 179 n y 
CAF CAG JUG doub 180 n n 
CAE CAI JUG doub 181 n y 
CAM CAI JUG sing 182 n y 
CAM CAK JUG sing 183 n n 
CAG CAK JUG sing 184 n n 
CAI OAC JUG sing 185 n n 
CAK OAB JUG doub 186 n n 
CAF HAF JUG sing 187 n n 
CAG HAG JUG sing 188 n n 
CAH HAH JUG sing 189 n n 
CAD HAD JUG sing 190 n n 
CAE HAE JUG sing 191 n n 
OAC HOAC JUG sing 192 n n 
#
_atom_sites.entry_id                     6BV6 
_atom_sites.fract_transf_matrix[1][1]    0.023959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008911 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JUG A 1 601 601 JUG JUG . 
C 2 JUG A 1 602 602 JUG JUG . 
D 2 JUG A 1 603 603 JUG JUG . 
E 3 ZN A 1 604 604 ZN ZN . 
F 4 HOH A 1 701 701 HOH HOH . 
F 4 HOH A 2 702 702 HOH HOH . 
F 4 HOH A 3 703 703 HOH HOH . 
F 4 HOH A 4 704 704 HOH HOH . 
F 4 HOH A 5 705 705 HOH HOH . 
F 4 HOH A 6 706 706 HOH HOH . 
F 4 HOH A 7 707 707 HOH HOH . 
F 4 HOH A 8 708 708 HOH HOH . 
F 4 HOH A 9 709 709 HOH HOH . 
F 4 HOH A 10 710 710 HOH HOH . 
F 4 HOH A 11 711 711 HOH HOH . 
F 4 HOH A 12 712 712 HOH HOH . 
F 4 HOH A 13 713 713 HOH HOH . 
F 4 HOH A 14 714 714 HOH HOH . 
F 4 HOH A 15 715 715 HOH HOH . 
F 4 HOH A 16 716 716 HOH HOH . 
F 4 HOH A 17 717 717 HOH HOH . 
F 4 HOH A 18 718 718 HOH HOH . 
F 4 HOH A 19 719 719 HOH HOH . 
F 4 HOH A 20 720 720 HOH HOH . 
F 4 HOH A 21 721 721 HOH HOH . 
F 4 HOH A 22 722 722 HOH HOH . 
F 4 HOH A 23 723 723 HOH HOH . 
F 4 HOH A 24 724 724 HOH HOH . 
F 4 HOH A 25 725 725 HOH HOH . 
F 4 HOH A 26 726 726 HOH HOH . 
F 4 HOH A 27 727 727 HOH HOH . 
F 4 HOH A 28 728 728 HOH HOH . 
F 4 HOH A 29 729 729 HOH HOH . 
F 4 HOH A 30 730 730 HOH HOH . 
F 4 HOH A 31 731 731 HOH HOH . 
F 4 HOH A 32 732 732 HOH HOH . 
F 4 HOH A 33 733 733 HOH HOH . 
F 4 HOH A 34 734 734 HOH HOH . 
F 4 HOH A 35 735 735 HOH HOH . 
F 4 HOH A 36 736 736 HOH HOH . 
F 4 HOH A 37 737 737 HOH HOH . 
F 4 HOH A 38 738 738 HOH HOH . 
F 4 HOH A 39 739 739 HOH HOH . 
F 4 HOH A 40 740 740 HOH HOH . 
F 4 HOH A 41 741 741 HOH HOH . 
F 4 HOH A 42 742 742 HOH HOH . 
F 4 HOH A 43 743 743 HOH HOH . 
F 4 HOH A 44 744 744 HOH HOH . 
F 4 HOH A 45 745 745 HOH HOH . 
F 4 HOH A 46 746 746 HOH HOH . 
F 4 HOH A 47 747 747 HOH HOH . 
F 4 HOH A 48 748 748 HOH HOH . 
F 4 HOH A 49 749 749 HOH HOH . 
F 4 HOH A 50 750 750 HOH HOH . 
F 4 HOH A 51 751 751 HOH HOH . 
F 4 HOH A 52 752 752 HOH HOH . 
F 4 HOH A 53 753 753 HOH HOH . 
F 4 HOH A 54 754 754 HOH HOH . 
F 4 HOH A 55 755 755 HOH HOH . 
F 4 HOH A 56 756 756 HOH HOH . 
F 4 HOH A 57 757 757 HOH HOH . 
F 4 HOH A 58 758 758 HOH HOH . 
F 4 HOH A 59 759 759 HOH HOH . 
F 4 HOH A 60 760 760 HOH HOH . 
F 4 HOH A 61 761 761 HOH HOH . 
F 4 HOH A 62 762 762 HOH HOH . 
F 4 HOH A 63 763 763 HOH HOH . 
F 4 HOH A 64 764 764 HOH HOH . 
F 4 HOH A 65 765 765 HOH HOH . 
F 4 HOH A 66 766 766 HOH HOH . 
F 4 HOH A 67 767 767 HOH HOH . 
F 4 HOH A 68 768 768 HOH HOH . 
F 4 HOH A 69 769 769 HOH HOH . 
F 4 HOH A 70 770 770 HOH HOH . 
F 4 HOH A 71 771 771 HOH HOH . 
F 4 HOH A 72 772 772 HOH HOH . 
F 4 HOH A 73 773 773 HOH HOH . 
F 4 HOH A 74 774 774 HOH HOH . 
F 4 HOH A 75 775 775 HOH HOH . 
F 4 HOH A 76 776 776 HOH HOH . 
F 4 HOH A 77 777 777 HOH HOH . 
F 4 HOH A 78 778 778 HOH HOH . 
F 4 HOH A 79 779 779 HOH HOH . 
F 4 HOH A 80 780 780 HOH HOH . 
F 4 HOH A 81 781 781 HOH HOH . 
F 4 HOH A 82 782 782 HOH HOH . 
F 4 HOH A 83 783 783 HOH HOH . 
F 4 HOH A 84 784 784 HOH HOH . 
F 4 HOH A 85 785 785 HOH HOH . 
F 4 HOH A 86 786 786 HOH HOH . 
F 4 HOH A 87 787 787 HOH HOH . 
F 4 HOH A 88 788 788 HOH HOH . 
F 4 HOH A 89 789 789 HOH HOH . 
F 4 HOH A 90 790 790 HOH HOH . 
F 4 HOH A 91 791 791 HOH HOH . 
F 4 HOH A 92 792 792 HOH HOH . 
F 4 HOH A 93 793 793 HOH HOH . 
F 4 HOH A 94 794 794 HOH HOH . 
F 4 HOH A 95 795 795 HOH HOH . 
F 4 HOH A 96 796 796 HOH HOH . 
F 4 HOH A 97 797 797 HOH HOH . 
F 4 HOH A 98 798 798 HOH HOH . 
F 4 HOH A 99 799 809 HOH HOH . 
F 4 HOH A 100 800 799 HOH HOH . 
F 4 HOH A 101 801 800 HOH HOH . 
F 4 HOH A 102 802 801 HOH HOH . 
F 4 HOH A 103 803 802 HOH HOH . 
F 4 HOH A 104 804 803 HOH HOH . 
F 4 HOH A 105 805 804 HOH HOH . 
F 4 HOH A 106 806 805 HOH HOH . 
F 4 HOH A 107 807 806 HOH HOH . 
F 4 HOH A 108 808 807 HOH HOH . 
F 4 HOH A 109 809 808 HOH HOH . 
F 4 HOH A 110 810 810 HOH HOH . 
F 4 HOH A 111 811 811 HOH HOH . 
F 4 HOH A 112 812 812 HOH HOH . 
F 4 HOH A 113 813 813 HOH HOH . 
F 4 HOH A 114 814 814 HOH HOH . 
F 4 HOH A 115 815 815 HOH HOH . 
F 4 HOH A 116 816 816 HOH HOH . 
F 4 HOH A 117 817 817 HOH HOH . 
F 4 HOH A 118 818 818 HOH HOH . 
F 4 HOH A 119 819 819 HOH HOH . 
F 4 HOH A 120 820 820 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA JUG . . . D 2 38.196 27.672 -25.062 1 90.04 ? OAA JUG 603 A 1 
HETATM 2 C CAJ JUG . . . D 2 37.667 28.15 -23.891 1 93.97 ? CAJ JUG 603 A 1 
HETATM 3 C CAF JUG . . . D 2 36.423 28.798 -23.881 1 85.61 ? CAF JUG 603 A 1 
HETATM 4 C CAG JUG . . . D 2 35.885 29.282 -22.685 1 75.46 ? CAG JUG 603 A 1 
HETATM 5 C CAK JUG . . . D 2 36.612 29.101 -21.501 1 86.63 ? CAK JUG 603 A 1 
HETATM 6 O OAB JUG . . . D 2 36.066 29.58 -20.336 1 87.59 ? OAB JUG 603 A 1 
HETATM 7 C CAM JUG . . . D 2 37.865 28.453 -21.482 1 94.41 ? CAM JUG 603 A 1 
HETATM 8 C CAL JUG . . . D 2 38.399 27.97 -22.701 1 97.45 ? CAL JUG 603 A 1 
HETATM 9 C CAH JUG . . . D 2 39.645 27.316 -22.705 1 105.78 ? CAH JUG 603 A 1 
HETATM 10 C CAD JUG . . . D 2 40.37 27.141 -21.52 1 111.19 ? CAD JUG 603 A 1 
HETATM 11 C CAE JUG . . . D 2 39.844 27.617 -20.312 1 106.47 ? CAE JUG 603 A 1 
HETATM 12 C CAI JUG . . . D 2 38.601 28.261 -20.303 1 99 ? CAI JUG 603 A 1 
HETATM 13 O OAC JUG . . . D 2 38.061 28.734 -19.15 1 101.02 ? OAC JUG 603 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#