data_6BV9 # _model_server_result.job_id v7H0tReHWsxabS6s3GLQdQ _model_server_result.datetime_utc '2024-12-01 11:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6BV9 # _exptl.entry_id 6BV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.153 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxynaphthalene-1,4-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BV9 _cell.length_a 41.78 _cell.length_b 111.818 _cell.length_c 139.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 273 A CYS 344 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A SG CYS 276 A CYS 347 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 A NE2 HIS 477 A HIS 548 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 A SG CYS 494 A CYS 565 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C10 H6 O3' _chem_comp.formula_weight 174.153 _chem_comp.id JUG _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxynaphthalene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Juglone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAJ JUG doub 173 n n CAH CAD JUG doub 174 n y CAH CAL JUG sing 175 n y CAJ CAL JUG sing 176 n n CAJ CAF JUG sing 177 n n CAD CAE JUG sing 178 n y CAL CAM JUG doub 179 n y CAF CAG JUG doub 180 n n CAE CAI JUG doub 181 n y CAM CAI JUG sing 182 n y CAM CAK JUG sing 183 n n CAG CAK JUG sing 184 n n CAI OAC JUG sing 185 n n CAK OAB JUG doub 186 n n CAF HAF JUG sing 187 n n CAG HAG JUG sing 188 n n CAH HAH JUG sing 189 n n CAD HAD JUG sing 190 n n CAE HAE JUG sing 191 n n OAC HOAC JUG sing 192 n n # _atom_sites.entry_id 6BV9 _atom_sites.fract_transf_matrix[1][1] 0.023935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JUG A 1 601 601 JUG JUG . C 2 JUG A 1 602 602 JUG JUG . D 2 JUG A 1 603 603 JUG JUG . E 3 ZN A 1 604 604 ZN ZN . F 4 CL A 1 605 605 CL CL . G 5 HOH A 1 701 701 HOH HOH . G 5 HOH A 2 702 702 HOH HOH . G 5 HOH A 3 703 703 HOH HOH . G 5 HOH A 4 704 704 HOH HOH . G 5 HOH A 5 705 705 HOH HOH . G 5 HOH A 6 706 706 HOH HOH . G 5 HOH A 7 707 707 HOH HOH . G 5 HOH A 8 708 708 HOH HOH . G 5 HOH A 9 709 709 HOH HOH . G 5 HOH A 10 710 710 HOH HOH . G 5 HOH A 11 711 711 HOH HOH . G 5 HOH A 12 712 712 HOH HOH . G 5 HOH A 13 713 713 HOH HOH . G 5 HOH A 14 714 714 HOH HOH . G 5 HOH A 15 715 715 HOH HOH . G 5 HOH A 16 716 716 HOH HOH . G 5 HOH A 17 717 717 HOH HOH . G 5 HOH A 18 718 718 HOH HOH . G 5 HOH A 19 719 719 HOH HOH . G 5 HOH A 20 720 720 HOH HOH . G 5 HOH A 21 721 721 HOH HOH . G 5 HOH A 22 722 722 HOH HOH . G 5 HOH A 23 723 723 HOH HOH . G 5 HOH A 24 724 724 HOH HOH . G 5 HOH A 25 725 725 HOH HOH . G 5 HOH A 26 726 726 HOH HOH . G 5 HOH A 27 727 727 HOH HOH . G 5 HOH A 28 728 728 HOH HOH . G 5 HOH A 29 729 729 HOH HOH . G 5 HOH A 30 730 730 HOH HOH . G 5 HOH A 31 731 731 HOH HOH . G 5 HOH A 32 732 732 HOH HOH . G 5 HOH A 33 733 733 HOH HOH . G 5 HOH A 34 734 734 HOH HOH . G 5 HOH A 35 735 735 HOH HOH . G 5 HOH A 36 736 736 HOH HOH . G 5 HOH A 37 737 737 HOH HOH . G 5 HOH A 38 738 738 HOH HOH . G 5 HOH A 39 739 739 HOH HOH . G 5 HOH A 40 740 740 HOH HOH . G 5 HOH A 41 741 741 HOH HOH . G 5 HOH A 42 742 742 HOH HOH . G 5 HOH A 43 743 743 HOH HOH . G 5 HOH A 44 744 744 HOH HOH . G 5 HOH A 45 745 745 HOH HOH . G 5 HOH A 46 746 746 HOH HOH . G 5 HOH A 47 747 747 HOH HOH . G 5 HOH A 48 748 748 HOH HOH . G 5 HOH A 49 749 749 HOH HOH . G 5 HOH A 50 750 750 HOH HOH . G 5 HOH A 51 751 751 HOH HOH . G 5 HOH A 52 752 752 HOH HOH . G 5 HOH A 53 753 753 HOH HOH . G 5 HOH A 54 754 754 HOH HOH . G 5 HOH A 55 755 755 HOH HOH . G 5 HOH A 56 756 756 HOH HOH . G 5 HOH A 57 757 758 HOH HOH . G 5 HOH A 58 758 759 HOH HOH . G 5 HOH A 59 759 760 HOH HOH . G 5 HOH A 60 760 761 HOH HOH . G 5 HOH A 61 761 762 HOH HOH . G 5 HOH A 62 762 763 HOH HOH . G 5 HOH A 63 763 764 HOH HOH . G 5 HOH A 64 764 765 HOH HOH . G 5 HOH A 65 765 766 HOH HOH . G 5 HOH A 66 766 767 HOH HOH . G 5 HOH A 67 767 768 HOH HOH . G 5 HOH A 68 768 769 HOH HOH . G 5 HOH A 69 769 770 HOH HOH . G 5 HOH A 70 770 771 HOH HOH . G 5 HOH A 71 771 772 HOH HOH . G 5 HOH A 72 772 773 HOH HOH . G 5 HOH A 73 773 774 HOH HOH . G 5 HOH A 74 774 775 HOH HOH . G 5 HOH A 75 775 776 HOH HOH . G 5 HOH A 76 776 777 HOH HOH . G 5 HOH A 77 777 778 HOH HOH . G 5 HOH A 78 778 779 HOH HOH . G 5 HOH A 79 779 780 HOH HOH . G 5 HOH A 80 780 781 HOH HOH . G 5 HOH A 81 781 782 HOH HOH . G 5 HOH A 82 782 783 HOH HOH . G 5 HOH A 83 783 784 HOH HOH . G 5 HOH A 84 784 785 HOH HOH . G 5 HOH A 85 785 786 HOH HOH . G 5 HOH A 86 786 842 HOH HOH . G 5 HOH A 87 787 787 HOH HOH . G 5 HOH A 88 788 757 HOH HOH . G 5 HOH A 89 789 788 HOH HOH . G 5 HOH A 90 790 789 HOH HOH . G 5 HOH A 91 791 790 HOH HOH . G 5 HOH A 92 792 791 HOH HOH . G 5 HOH A 93 793 792 HOH HOH . G 5 HOH A 94 794 793 HOH HOH . G 5 HOH A 95 795 794 HOH HOH . G 5 HOH A 96 796 796 HOH HOH . G 5 HOH A 97 797 797 HOH HOH . G 5 HOH A 98 798 798 HOH HOH . G 5 HOH A 99 799 799 HOH HOH . G 5 HOH A 100 800 800 HOH HOH . G 5 HOH A 101 801 801 HOH HOH . G 5 HOH A 102 802 802 HOH HOH . G 5 HOH A 103 803 803 HOH HOH . G 5 HOH A 104 804 804 HOH HOH . G 5 HOH A 105 805 805 HOH HOH . G 5 HOH A 106 806 806 HOH HOH . G 5 HOH A 107 807 795 HOH HOH . G 5 HOH A 108 808 807 HOH HOH . G 5 HOH A 109 809 808 HOH HOH . G 5 HOH A 110 810 809 HOH HOH . G 5 HOH A 111 811 810 HOH HOH . G 5 HOH A 112 812 811 HOH HOH . G 5 HOH A 113 813 812 HOH HOH . G 5 HOH A 114 814 813 HOH HOH . G 5 HOH A 115 815 814 HOH HOH . G 5 HOH A 116 816 815 HOH HOH . G 5 HOH A 117 817 816 HOH HOH . G 5 HOH A 118 818 817 HOH HOH . G 5 HOH A 119 819 818 HOH HOH . G 5 HOH A 120 820 819 HOH HOH . G 5 HOH A 121 821 820 HOH HOH . G 5 HOH A 122 822 821 HOH HOH . G 5 HOH A 123 823 822 HOH HOH . G 5 HOH A 124 824 823 HOH HOH . G 5 HOH A 125 825 824 HOH HOH . G 5 HOH A 126 826 825 HOH HOH . G 5 HOH A 127 827 826 HOH HOH . G 5 HOH A 128 828 827 HOH HOH . G 5 HOH A 129 829 828 HOH HOH . G 5 HOH A 130 830 829 HOH HOH . G 5 HOH A 131 831 830 HOH HOH . G 5 HOH A 132 832 831 HOH HOH . G 5 HOH A 133 833 832 HOH HOH . G 5 HOH A 134 834 833 HOH HOH . G 5 HOH A 135 835 834 HOH HOH . G 5 HOH A 136 836 835 HOH HOH . G 5 HOH A 137 837 836 HOH HOH . G 5 HOH A 138 838 837 HOH HOH . G 5 HOH A 139 839 838 HOH HOH . G 5 HOH A 140 840 839 HOH HOH . G 5 HOH A 141 841 840 HOH HOH . G 5 HOH A 142 842 841 HOH HOH . G 5 HOH A 143 843 843 HOH HOH . G 5 HOH A 144 844 844 HOH HOH . G 5 HOH A 145 845 845 HOH HOH . G 5 HOH A 146 846 846 HOH HOH . G 5 HOH A 147 847 847 HOH HOH . G 5 HOH A 148 848 848 HOH HOH . G 5 HOH A 149 849 849 HOH HOH . G 5 HOH A 150 850 850 HOH HOH . G 5 HOH A 151 851 851 HOH HOH . G 5 HOH A 152 852 852 HOH HOH . G 5 HOH A 153 853 853 HOH HOH . G 5 HOH A 154 854 854 HOH HOH . G 5 HOH A 155 855 855 HOH HOH . G 5 HOH A 156 856 856 HOH HOH . G 5 HOH A 157 857 857 HOH HOH . G 5 HOH A 158 858 858 HOH HOH . G 5 HOH A 159 859 859 HOH HOH . G 5 HOH A 160 860 860 HOH HOH . G 5 HOH A 161 861 861 HOH HOH . G 5 HOH A 162 862 862 HOH HOH . G 5 HOH A 163 863 863 HOH HOH . G 5 HOH A 164 864 864 HOH HOH . G 5 HOH A 165 865 865 HOH HOH . G 5 HOH A 166 866 866 HOH HOH . G 5 HOH A 167 867 867 HOH HOH . G 5 HOH A 168 868 868 HOH HOH . G 5 HOH A 169 869 869 HOH HOH . G 5 HOH A 170 870 870 HOH HOH . G 5 HOH A 171 871 871 HOH HOH . G 5 HOH A 172 872 872 HOH HOH . G 5 HOH A 173 873 873 HOH HOH . G 5 HOH A 174 874 874 HOH HOH . G 5 HOH A 175 875 875 HOH HOH . G 5 HOH A 176 876 876 HOH HOH . G 5 HOH A 177 877 877 HOH HOH . G 5 HOH A 178 878 878 HOH HOH . G 5 HOH A 179 879 879 HOH HOH . G 5 HOH A 180 880 880 HOH HOH . G 5 HOH A 181 881 881 HOH HOH . G 5 HOH A 182 882 882 HOH HOH . G 5 HOH A 183 883 883 HOH HOH . G 5 HOH A 184 884 884 HOH HOH . G 5 HOH A 185 885 885 HOH HOH . G 5 HOH A 186 886 886 HOH HOH . G 5 HOH A 187 887 887 HOH HOH . G 5 HOH A 188 888 888 HOH HOH . G 5 HOH A 189 889 889 HOH HOH . G 5 HOH A 190 890 890 HOH HOH . G 5 HOH A 191 891 891 HOH HOH . G 5 HOH A 192 892 892 HOH HOH . G 5 HOH A 193 893 893 HOH HOH . G 5 HOH A 194 894 894 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA JUG . . . D 2 17.167 27.927 -24.948 1 93.96 ? OAA JUG 603 A 1 HETATM 2 C CAJ JUG . . . D 2 16.571 28.354 -23.784 1 94.76 ? CAJ JUG 603 A 1 HETATM 3 C CAF JUG . . . D 2 15.305 28.951 -23.815 1 80.69 ? CAF JUG 603 A 1 HETATM 4 C CAG JUG . . . D 2 14.71 29.369 -22.622 1 68.65 ? CAG JUG 603 A 1 HETATM 5 C CAK JUG . . . D 2 15.363 29.187 -21.402 1 81.05 ? CAK JUG 603 A 1 HETATM 6 O OAB JUG . . . D 2 14.727 29.621 -20.252 1 80.79 ? OAB JUG 603 A 1 HETATM 7 C CAM JUG . . . D 2 16.64 28.594 -21.348 1 88.29 ? CAM JUG 603 A 1 HETATM 8 C CAL JUG . . . D 2 17.249 28.171 -22.559 1 95.33 ? CAL JUG 603 A 1 HETATM 9 C CAH JUG . . . D 2 18.514 27.565 -22.527 1 102.84 ? CAH JUG 603 A 1 HETATM 10 C CAD JUG . . . D 2 19.181 27.382 -21.316 1 103.69 ? CAD JUG 603 A 1 HETATM 11 C CAE JUG . . . D 2 18.585 27.801 -20.122 1 98.45 ? CAE JUG 603 A 1 HETATM 12 C CAI JUG . . . D 2 17.325 28.398 -20.145 1 92.6 ? CAI JUG 603 A 1 HETATM 13 O OAC JUG . . . D 2 16.715 28.809 -19.005 1 86.3 ? OAC JUG 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #