data_6BVR # _model_server_result.job_id VaATVeMCuW5UNJhVNdddew _model_server_result.datetime_utc '2025-01-11 03:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6BVR # _exptl.entry_id 6BVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BVR _cell.length_a 58.914 _cell.length_b 58.914 _cell.length_c 232.062 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.457 -51.021021 38.677 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc9 C FE FE2 . A FE2 202 1_555 E O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc10 C FE FE2 . A FE2 202 1_555 E O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 6BVR _atom_sites.fract_transf_matrix[1][1] 0.016974 _atom_sites.fract_transf_matrix[1][2] 0.0098 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 400 TRS TRS . C 3 FE2 A 1 202 201 FE2 FE2 . D 3 FE2 A 1 203 202 FE2 FE2 . E 4 HOH A 1 301 142 HOH HOH . E 4 HOH A 2 302 166 HOH HOH . E 4 HOH A 3 303 150 HOH HOH . E 4 HOH A 4 304 174 HOH HOH . E 4 HOH A 5 305 160 HOH HOH . E 4 HOH A 6 306 112 HOH HOH . E 4 HOH A 7 307 127 HOH HOH . E 4 HOH A 8 308 132 HOH HOH . E 4 HOH A 9 309 104 HOH HOH . E 4 HOH A 10 310 167 HOH HOH . E 4 HOH A 11 311 111 HOH HOH . E 4 HOH A 12 312 151 HOH HOH . E 4 HOH A 13 313 41 HOH HOH . E 4 HOH A 14 314 93 HOH HOH . E 4 HOH A 15 315 168 HOH HOH . E 4 HOH A 16 316 55 HOH HOH . E 4 HOH A 17 317 79 HOH HOH . E 4 HOH A 18 318 116 HOH HOH . E 4 HOH A 19 319 109 HOH HOH . E 4 HOH A 20 320 10 HOH HOH . E 4 HOH A 21 321 68 HOH HOH . E 4 HOH A 22 322 1 HOH HOH . E 4 HOH A 23 323 117 HOH HOH . E 4 HOH A 24 324 38 HOH HOH . E 4 HOH A 25 325 60 HOH HOH . E 4 HOH A 26 326 50 HOH HOH . E 4 HOH A 27 327 48 HOH HOH . E 4 HOH A 28 328 51 HOH HOH . E 4 HOH A 29 329 65 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 81 HOH HOH . E 4 HOH A 32 332 82 HOH HOH . E 4 HOH A 33 333 101 HOH HOH . E 4 HOH A 34 334 80 HOH HOH . E 4 HOH A 35 335 18 HOH HOH . E 4 HOH A 36 336 149 HOH HOH . E 4 HOH A 37 337 144 HOH HOH . E 4 HOH A 38 338 24 HOH HOH . E 4 HOH A 39 339 31 HOH HOH . E 4 HOH A 40 340 106 HOH HOH . E 4 HOH A 41 341 20 HOH HOH . E 4 HOH A 42 342 11 HOH HOH . E 4 HOH A 43 343 61 HOH HOH . E 4 HOH A 44 344 15 HOH HOH . E 4 HOH A 45 345 5 HOH HOH . E 4 HOH A 46 346 3 HOH HOH . E 4 HOH A 47 347 70 HOH HOH . E 4 HOH A 48 348 47 HOH HOH . E 4 HOH A 49 349 77 HOH HOH . E 4 HOH A 50 350 64 HOH HOH . E 4 HOH A 51 351 115 HOH HOH . E 4 HOH A 52 352 45 HOH HOH . E 4 HOH A 53 353 124 HOH HOH . E 4 HOH A 54 354 12 HOH HOH . E 4 HOH A 55 355 74 HOH HOH . E 4 HOH A 56 356 23 HOH HOH . E 4 HOH A 57 357 6 HOH HOH . E 4 HOH A 58 358 7 HOH HOH . E 4 HOH A 59 359 16 HOH HOH . E 4 HOH A 60 360 9 HOH HOH . E 4 HOH A 61 361 94 HOH HOH . E 4 HOH A 62 362 170 HOH HOH . E 4 HOH A 63 363 21 HOH HOH . E 4 HOH A 64 364 165 HOH HOH . E 4 HOH A 65 365 105 HOH HOH . E 4 HOH A 66 366 137 HOH HOH . E 4 HOH A 67 367 34 HOH HOH . E 4 HOH A 68 368 147 HOH HOH . E 4 HOH A 69 369 103 HOH HOH . E 4 HOH A 70 370 57 HOH HOH . E 4 HOH A 71 371 42 HOH HOH . E 4 HOH A 72 372 40 HOH HOH . E 4 HOH A 73 373 90 HOH HOH . E 4 HOH A 74 374 146 HOH HOH . E 4 HOH A 75 375 113 HOH HOH . E 4 HOH A 76 376 13 HOH HOH . E 4 HOH A 77 377 35 HOH HOH . E 4 HOH A 78 378 27 HOH HOH . E 4 HOH A 79 379 123 HOH HOH . E 4 HOH A 80 380 33 HOH HOH . E 4 HOH A 81 381 148 HOH HOH . E 4 HOH A 82 382 28 HOH HOH . E 4 HOH A 83 383 14 HOH HOH . E 4 HOH A 84 384 75 HOH HOH . E 4 HOH A 85 385 37 HOH HOH . E 4 HOH A 86 386 152 HOH HOH . E 4 HOH A 87 387 26 HOH HOH . E 4 HOH A 88 388 43 HOH HOH . E 4 HOH A 89 389 108 HOH HOH . E 4 HOH A 90 390 83 HOH HOH . E 4 HOH A 91 391 120 HOH HOH . E 4 HOH A 92 392 17 HOH HOH . E 4 HOH A 93 393 78 HOH HOH . E 4 HOH A 94 394 54 HOH HOH . E 4 HOH A 95 395 8 HOH HOH . E 4 HOH A 96 396 89 HOH HOH . E 4 HOH A 97 397 52 HOH HOH . E 4 HOH A 98 398 58 HOH HOH . E 4 HOH A 99 399 84 HOH HOH . E 4 HOH A 100 400 32 HOH HOH . E 4 HOH A 101 401 172 HOH HOH . E 4 HOH A 102 402 66 HOH HOH . E 4 HOH A 103 403 91 HOH HOH . E 4 HOH A 104 404 71 HOH HOH . E 4 HOH A 105 405 88 HOH HOH . E 4 HOH A 106 406 39 HOH HOH . E 4 HOH A 107 407 29 HOH HOH . E 4 HOH A 108 408 180 HOH HOH . E 4 HOH A 109 409 138 HOH HOH . E 4 HOH A 110 410 153 HOH HOH . E 4 HOH A 111 411 102 HOH HOH . E 4 HOH A 112 412 86 HOH HOH . E 4 HOH A 113 413 179 HOH HOH . E 4 HOH A 114 414 100 HOH HOH . E 4 HOH A 115 415 4 HOH HOH . E 4 HOH A 116 416 30 HOH HOH . E 4 HOH A 117 417 49 HOH HOH . E 4 HOH A 118 418 131 HOH HOH . E 4 HOH A 119 419 59 HOH HOH . E 4 HOH A 120 420 69 HOH HOH . E 4 HOH A 121 421 95 HOH HOH . E 4 HOH A 122 422 73 HOH HOH . E 4 HOH A 123 423 36 HOH HOH . E 4 HOH A 124 424 76 HOH HOH . E 4 HOH A 125 425 98 HOH HOH . E 4 HOH A 126 426 44 HOH HOH . E 4 HOH A 127 427 125 HOH HOH . E 4 HOH A 128 428 2 HOH HOH . E 4 HOH A 129 429 139 HOH HOH . E 4 HOH A 130 430 87 HOH HOH . E 4 HOH A 131 431 157 HOH HOH . E 4 HOH A 132 432 161 HOH HOH . E 4 HOH A 133 433 72 HOH HOH . E 4 HOH A 134 434 177 HOH HOH . E 4 HOH A 135 435 63 HOH HOH . E 4 HOH A 136 436 156 HOH HOH . E 4 HOH A 137 437 56 HOH HOH . E 4 HOH A 138 438 143 HOH HOH . E 4 HOH A 139 439 175 HOH HOH . E 4 HOH A 140 440 126 HOH HOH . E 4 HOH A 141 441 122 HOH HOH . E 4 HOH A 142 442 99 HOH HOH . E 4 HOH A 143 443 97 HOH HOH . E 4 HOH A 144 444 135 HOH HOH . E 4 HOH A 145 445 158 HOH HOH . E 4 HOH A 146 446 141 HOH HOH . E 4 HOH A 147 447 176 HOH HOH . E 4 HOH A 148 448 133 HOH HOH . E 4 HOH A 149 449 53 HOH HOH . E 4 HOH A 150 450 46 HOH HOH . E 4 HOH A 151 451 62 HOH HOH . E 4 HOH A 152 452 145 HOH HOH . E 4 HOH A 153 453 129 HOH HOH . E 4 HOH A 154 454 128 HOH HOH . E 4 HOH A 155 455 171 HOH HOH . E 4 HOH A 156 456 114 HOH HOH . E 4 HOH A 157 457 134 HOH HOH . E 4 HOH A 158 458 67 HOH HOH . E 4 HOH A 159 459 121 HOH HOH . E 4 HOH A 160 460 154 HOH HOH . E 4 HOH A 161 461 107 HOH HOH . E 4 HOH A 162 462 136 HOH HOH . E 4 HOH A 163 463 140 HOH HOH . E 4 HOH A 164 464 164 HOH HOH . E 4 HOH A 165 465 162 HOH HOH . E 4 HOH A 166 466 22 HOH HOH . E 4 HOH A 167 467 169 HOH HOH . E 4 HOH A 168 468 25 HOH HOH . E 4 HOH A 169 469 92 HOH HOH . E 4 HOH A 170 470 118 HOH HOH . E 4 HOH A 171 471 173 HOH HOH . E 4 HOH A 172 472 181 HOH HOH . E 4 HOH A 173 473 130 HOH HOH . E 4 HOH A 174 474 163 HOH HOH . E 4 HOH A 175 475 182 HOH HOH . E 4 HOH A 176 476 119 HOH HOH . E 4 HOH A 177 477 178 HOH HOH . E 4 HOH A 178 478 110 HOH HOH . E 4 HOH A 179 479 96 HOH HOH . E 4 HOH A 180 480 155 HOH HOH . E 4 HOH A 181 481 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -17.373 -9.422 -11.069 1 35.34 ? C TRS 201 A 1 HETATM 2 C C1 TRS . . . B 2 -18.282 -10.083 -10.04 1 39.25 ? C1 TRS 201 A 1 HETATM 3 C C2 TRS . . . B 2 -18.12 -9.126 -12.367 1 39.73 ? C2 TRS 201 A 1 HETATM 4 C C3 TRS . . . B 2 -16.812 -8.125 -10.505 1 42.48 ? C3 TRS 201 A 1 HETATM 5 N N TRS . . . B 2 -16.265 -10.324 -11.361 1 33.38 ? N TRS 201 A 1 HETATM 6 O O1 TRS . . . B 2 -18.54 -11.405 -10.442 1 37.43 ? O1 TRS 201 A 1 HETATM 7 O O2 TRS . . . B 2 -17.149 -8.851 -13.347 1 41.1 ? O2 TRS 201 A 1 HETATM 8 O O3 TRS . . . B 2 -17.878 -7.222 -10.323 1 44.49 ? O3 TRS 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #