data_6BW5
#
_model_server_result.job_id            nr8392QDA00F2QOfRFFgvQ 
_model_server_result.datetime_utc      '2024-11-13 20:32:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6BW5 
#
_exptl.entry_id    6BW5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.53 
_cell.angle_gamma         90 
_cell.entry_id            6BW5 
_cell.length_a            212.272 
_cell.length_b            105.512 
_cell.length_c            149.389 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BW5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 106 A CYS 106 1_555 B SG CYS 106 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 C SG CYS 106 C CYS 106 1_555 D SG CYS 106 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 235 n n 
CAD HAD PGW sing 236 n n 
CAD HADA PGW sing 237 n n 
OAE CAD PGW sing 238 n n 
OAE HOAE PGW sing 239 n n 
OAF C05 PGW sing 240 n n 
OAF HOAF PGW sing 241 n n 
P O13 PGW sing 242 n n 
P O11 PGW sing 243 n n 
C01 O03 PGW sing 244 n n 
C01 C02 PGW sing 245 n n 
C01 H01 PGW sing 246 n n 
C01 H01A PGW sing 247 n n 
C1 C2 PGW sing 248 n n 
O01 C1 PGW sing 249 n n 
C02 O01 PGW sing 250 n n 
C02 H02 PGW sing 251 n n 
C2 C3 PGW sing 252 n n 
C2 H2 PGW sing 253 n n 
C2 H2A PGW sing 254 n n 
O02 C1 PGW doub 255 n n 
C03 C02 PGW sing 256 n n 
C03 H03 PGW sing 257 n n 
C03 H03A PGW sing 258 n n 
C3 C4 PGW sing 259 n n 
C3 H3 PGW sing 260 n n 
C3 H3A PGW sing 261 n n 
C04 C05 PGW sing 262 n n 
C04 O12 PGW sing 263 n n 
C04 H04 PGW sing 264 n n 
C04 H04A PGW sing 265 n n 
C4 C5 PGW sing 266 n n 
C4 H4 PGW sing 267 n n 
C4 H4A PGW sing 268 n n 
O04 C19 PGW doub 269 n n 
C05 H05 PGW sing 270 n n 
C5 C6 PGW sing 271 n n 
C5 H5 PGW sing 272 n n 
C5 H5A PGW sing 273 n n 
C06 C07 PGW sing 274 n n 
C06 H06 PGW sing 275 n n 
C06 H06A PGW sing 276 n n 
C6 C7 PGW sing 277 n n 
C6 H6 PGW sing 278 n n 
C6 H6A PGW sing 279 n n 
C07 H07 PGW sing 280 n n 
C07 H07A PGW sing 281 n n 
C7 C8 PGW sing 282 n n 
C7 H7 PGW sing 283 n n 
C7 H7A PGW sing 284 n n 
C08 C07 PGW sing 285 n n 
C08 H08 PGW sing 286 n n 
C08 H08A PGW sing 287 n n 
C8 C9 PGW sing 288 n n 
C8 H8 PGW sing 289 n n 
C8 H8A PGW sing 290 n n 
C09 C08 PGW sing 291 n n 
C09 C11 PGW sing 292 n n 
C09 H09 PGW sing 293 n n 
C09 H09A PGW sing 294 n n 
C9 C10 PGW doub 295 z n 
C10 C06 PGW sing 296 n n 
C11 H11 PGW sing 297 n n 
C11 H11A PGW sing 298 n n 
O11 C03 PGW sing 299 n n 
C12 C11 PGW sing 300 n n 
C12 H12 PGW sing 301 n n 
C12 H12A PGW sing 302 n n 
O12 P PGW sing 303 n n 
C13 C12 PGW sing 304 n n 
C13 C14 PGW sing 305 n n 
C13 H13 PGW sing 306 n n 
C13 H13A PGW sing 307 n n 
O13 HO13 PGW sing 308 n n 
C14 H14 PGW sing 309 n n 
C14 H14A PGW sing 310 n n 
C14 H14B PGW sing 311 n n 
O14 P PGW doub 312 n n 
C15 C16 PGW sing 313 n n 
C15 H15 PGW sing 314 n n 
C15 H15A PGW sing 315 n n 
C16 H16 PGW sing 316 n n 
C16 H16A PGW sing 317 n n 
C17 C16 PGW sing 318 n n 
C17 C18 PGW sing 319 n n 
C17 H17 PGW sing 320 n n 
C17 H17A PGW sing 321 n n 
C18 C28 PGW sing 322 n n 
C18 H18 PGW sing 323 n n 
C18 H18A PGW sing 324 n n 
C19 O03 PGW sing 325 n n 
C19 C20 PGW sing 326 n n 
C20 C21 PGW sing 327 n n 
C20 H20 PGW sing 328 n n 
C20 H20A PGW sing 329 n n 
C21 C22 PGW sing 330 n n 
C21 H21 PGW sing 331 n n 
C21 H21A PGW sing 332 n n 
C22 C23 PGW sing 333 n n 
C22 H22 PGW sing 334 n n 
C22 H22A PGW sing 335 n n 
C23 C24 PGW sing 336 n n 
C23 H23 PGW sing 337 n n 
C23 H23A PGW sing 338 n n 
C24 C25 PGW sing 339 n n 
C24 H24 PGW sing 340 n n 
C24 H24A PGW sing 341 n n 
C25 C26 PGW sing 342 n n 
C25 H25 PGW sing 343 n n 
C25 H25A PGW sing 344 n n 
C26 C27 PGW sing 345 n n 
C26 H26 PGW sing 346 n n 
C26 H26A PGW sing 347 n n 
C27 C15 PGW sing 348 n n 
C27 H27 PGW sing 349 n n 
C27 H27A PGW sing 350 n n 
C28 H28 PGW sing 351 n n 
C28 H28A PGW sing 352 n n 
C29 H29 PGW sing 353 n n 
C29 H29A PGW sing 354 n n 
C29 H29B PGW sing 355 n n 
C30 C28 PGW sing 356 n n 
C30 C29 PGW sing 357 n n 
C30 H30 PGW sing 358 n n 
C30 H30A PGW sing 359 n n 
C9 H9 PGW sing 360 n n 
C10 H10 PGW sing 361 n n 
#
_atom_sites.entry_id                     6BW5 
_atom_sites.fract_transf_matrix[1][1]    0.004711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001134 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TUM A 1 501 409 TUM TUM . 
F 3 PGW A 1 502 410 PGW PGW . 
G 2 TUM B 1 501 409 TUM TUM . 
H 3 PGW B 1 502 410 PGW PGW . 
I 2 TUM C 1 501 409 TUM TUM . 
J 3 PGW C 1 502 410 PGW PGW . 
K 2 TUM D 1 501 409 TUM TUM . 
L 3 PGW D 1 502 410 PGW PGW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGW . . . F 3 22.291 22.933 34.792 1 134.6 ? P PGW 502 A 1 
HETATM 2 C C01 PGW . . . F 3 17.78 23.681 34.223 1 99.08 ? C01 PGW 502 A 1 
HETATM 3 C C1 PGW . . . F 3 19.253 21.621 31.589 1 94.38 ? C1 PGW 502 A 1 
HETATM 4 O O01 PGW . . . F 3 18.475 22.585 32.237 1 104.16 ? O01 PGW 502 A 1 
HETATM 5 C C02 PGW . . . F 3 18.902 22.913 33.529 1 116.61 ? C02 PGW 502 A 1 
HETATM 6 C C2 PGW . . . F 3 19.164 21.467 30.073 1 69.78 ? C2 PGW 502 A 1 
HETATM 7 O O02 PGW . . . F 3 19.978 20.921 32.213 1 97.36 ? O02 PGW 502 A 1 
HETATM 8 C C03 PGW . . . F 3 20.163 23.774 33.453 1 128.85 ? C03 PGW 502 A 1 
HETATM 9 C C3 PGW . . . F 3 20.2 20.483 29.541 1 53.49 ? C3 PGW 502 A 1 
HETATM 10 O O03 PGW . . . F 3 16.815 22.757 34.64 1 82.12 ? O03 PGW 502 A 1 
HETATM 11 C C04 PGW . . . F 3 23.006 21.274 36.678 1 133.08 ? C04 PGW 502 A 1 
HETATM 12 C C4 PGW . . . F 3 20.65 20.833 28.128 1 46.89 ? C4 PGW 502 A 1 
HETATM 13 C C5 PGW . . . F 3 21.923 20.091 27.743 1 40.99 ? C5 PGW 502 A 1 
HETATM 14 C C06 PGW . . . F 3 24.462 15.71 25.462 1 49.75 ? C06 PGW 502 A 1 
HETATM 15 C C6 PGW . . . F 3 22.457 20.559 26.395 1 50.21 ? C6 PGW 502 A 1 
HETATM 16 C C07 PGW . . . F 3 24.068 15.379 24.023 1 38.93 ? C07 PGW 502 A 1 
HETATM 17 C C7 PGW . . . F 3 23.863 20.031 26.119 1 51.82 ? C7 PGW 502 A 1 
HETATM 18 C C08 PGW . . . F 3 22.616 14.918 23.961 1 30.77 ? C08 PGW 502 A 1 
HETATM 19 C C8 PGW . . . F 3 23.933 18.508 26.222 1 36.63 ? C8 PGW 502 A 1 
HETATM 20 C C09 PGW . . . F 3 21.932 15.166 22.626 1 32.97 ? C09 PGW 502 A 1 
HETATM 21 C C9 PGW . . . F 3 25.315 18.033 25.779 1 37.47 ? C9 PGW 502 A 1 
HETATM 22 C C10 PGW . . . F 3 25.551 16.78 25.438 1 34.93 ? C10 PGW 502 A 1 
HETATM 23 C C11 PGW . . . F 3 20.539 15.706 22.907 1 34.74 ? C11 PGW 502 A 1 
HETATM 24 O O11 PGW . . . F 3 21.29 22.94 33.478 1 138.08 ? O11 PGW 502 A 1 
HETATM 25 C C12 PGW . . . F 3 19.6 15.638 21.715 1 26.73 ? C12 PGW 502 A 1 
HETATM 26 O O12 PGW . . . F 3 22.063 21.568 35.687 1 133.79 ? O12 PGW 502 A 1 
HETATM 27 C C13 PGW . . . F 3 18.317 16.389 22.047 1 30.25 ? C13 PGW 502 A 1 
HETATM 28 O O13 PGW . . . F 3 22.036 24.148 35.652 1 147.49 ? O13 PGW 502 A 1 
HETATM 29 C C14 PGW . . . F 3 17.358 16.444 20.867 1 23.9 ? C14 PGW 502 A 1 
HETATM 30 O O14 PGW . . . F 3 23.722 22.966 34.313 1 133.82 ? O14 PGW 502 A 1 
HETATM 31 H H01 PGW . . . F 3 18.134 24.154 34.992 1 118.9 ? H01 PGW 502 A 1 
HETATM 32 H H01A PGW . . . F 3 17.383 24.312 33.603 1 118.9 ? H01A PGW 502 A 1 
HETATM 33 H H02 PGW . . . F 3 19.093 22.1 34.023 1 139.93 ? H02 PGW 502 A 1 
HETATM 34 H H2 PGW . . . F 3 19.308 22.333 29.659 1 83.73 ? H2 PGW 502 A 1 
HETATM 35 H H2A PGW . . . F 3 18.277 21.15 29.839 1 83.73 ? H2A PGW 502 A 1 
HETATM 36 H H03 PGW . . . F 3 20.155 24.283 32.628 1 154.62 ? H03 PGW 502 A 1 
HETATM 37 H H03A PGW . . . F 3 20.189 24.38 34.21 1 154.62 ? H03A PGW 502 A 1 
HETATM 38 H H3 PGW . . . F 3 19.816 19.593 29.537 1 64.19 ? H3 PGW 502 A 1 
HETATM 39 H H3A PGW . . . F 3 20.972 20.491 30.128 1 64.19 ? H3A PGW 502 A 1 
HETATM 40 H H04A PGW . . . F 3 22.676 21.568 37.541 1 159.7 ? H04A PGW 502 A 1 
HETATM 41 H H4 PGW . . . F 3 20.813 21.788 28.076 1 56.27 ? H4 PGW 502 A 1 
HETATM 42 H H4A PGW . . . F 3 19.945 20.598 27.505 1 56.27 ? H4A PGW 502 A 1 
HETATM 43 H H5 PGW . . . F 3 21.733 19.141 27.696 1 49.19 ? H5 PGW 502 A 1 
HETATM 44 H H5A PGW . . . F 3 22.597 20.246 28.423 1 49.19 ? H5A PGW 502 A 1 
HETATM 45 H H06 PGW . . . F 3 23.689 16.043 25.943 1 59.69 ? H06 PGW 502 A 1 
HETATM 46 H H06A PGW . . . F 3 24.799 14.912 25.899 1 59.69 ? H06A PGW 502 A 1 
HETATM 47 H H6 PGW . . . F 3 22.478 21.529 26.384 1 60.25 ? H6 PGW 502 A 1 
HETATM 48 H H6A PGW . . . F 3 21.861 20.249 25.695 1 60.25 ? H6A PGW 502 A 1 
HETATM 49 H H07 PGW . . . F 3 24.643 14.674 23.688 1 46.72 ? H07 PGW 502 A 1 
HETATM 50 H H07A PGW . . . F 3 24.177 16.17 23.472 1 46.72 ? H07A PGW 502 A 1 
HETATM 51 H H7 PGW . . . F 3 24.477 20.419 26.762 1 62.19 ? H7 PGW 502 A 1 
HETATM 52 H H7A PGW . . . F 3 24.13 20.299 25.226 1 62.19 ? H7A PGW 502 A 1 
HETATM 53 H H08 PGW . . . F 3 22.117 15.382 24.652 1 36.93 ? H08 PGW 502 A 1 
HETATM 54 H H08A PGW . . . F 3 22.588 13.967 24.147 1 36.93 ? H08A PGW 502 A 1 
HETATM 55 H H8 PGW . . . F 3 23.257 18.114 25.649 1 43.96 ? H8 PGW 502 A 1 
HETATM 56 H H8A PGW . . . F 3 23.777 18.238 27.14 1 43.96 ? H8A PGW 502 A 1 
HETATM 57 H H09 PGW . . . F 3 21.867 14.335 22.13 1 39.57 ? H09 PGW 502 A 1 
HETATM 58 H H09A PGW . . . F 3 22.438 15.816 22.113 1 39.57 ? H09A PGW 502 A 1 
HETATM 59 H H11 PGW . . . F 3 20.618 16.632 23.186 1 41.68 ? H11 PGW 502 A 1 
HETATM 60 H H11A PGW . . . F 3 20.152 15.196 23.636 1 41.68 ? H11A PGW 502 A 1 
HETATM 61 H H12 PGW . . . F 3 19.392 14.711 21.519 1 32.07 ? H12 PGW 502 A 1 
HETATM 62 H H12A PGW . . . F 3 20.024 16.046 20.944 1 32.07 ? H12A PGW 502 A 1 
HETATM 63 H H13 PGW . . . F 3 18.542 17.294 22.311 1 36.3 ? H13 PGW 502 A 1 
HETATM 64 H H13A PGW . . . F 3 17.876 15.945 22.789 1 36.3 ? H13A PGW 502 A 1 
HETATM 65 H H14 PGW . . . F 3 16.543 16.899 21.134 1 28.68 ? H14 PGW 502 A 1 
HETATM 66 H H14A PGW . . . F 3 17.146 15.543 20.58 1 28.68 ? H14A PGW 502 A 1 
HETATM 67 H H14B PGW . . . F 3 17.773 16.928 20.135 1 28.68 ? H14B PGW 502 A 1 
HETATM 68 H H9 PGW . . . F 3 26.013 18.647 25.748 1 44.96 ? H9 PGW 502 A 1 
HETATM 69 H H10 PGW . . . F 3 26.41 16.541 25.175 1 41.91 ? H10 PGW 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           69 
#