data_6BW5 # _model_server_result.job_id WZcYGoakwBE--4EJ3CaHAw _model_server_result.datetime_utc '2024-11-13 20:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":502}' # _entry.id 6BW5 # _exptl.entry_id 6BW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.53 _cell.angle_gamma 90 _cell.entry_id 6BW5 _cell.length_a 212.272 _cell.length_b 105.512 _cell.length_c 149.389 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 106 1_555 B SG CYS 106 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 C SG CYS 106 C CYS 106 1_555 D SG CYS 106 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 235 n n CAD HAD PGW sing 236 n n CAD HADA PGW sing 237 n n OAE CAD PGW sing 238 n n OAE HOAE PGW sing 239 n n OAF C05 PGW sing 240 n n OAF HOAF PGW sing 241 n n P O13 PGW sing 242 n n P O11 PGW sing 243 n n C01 O03 PGW sing 244 n n C01 C02 PGW sing 245 n n C01 H01 PGW sing 246 n n C01 H01A PGW sing 247 n n C1 C2 PGW sing 248 n n O01 C1 PGW sing 249 n n C02 O01 PGW sing 250 n n C02 H02 PGW sing 251 n n C2 C3 PGW sing 252 n n C2 H2 PGW sing 253 n n C2 H2A PGW sing 254 n n O02 C1 PGW doub 255 n n C03 C02 PGW sing 256 n n C03 H03 PGW sing 257 n n C03 H03A PGW sing 258 n n C3 C4 PGW sing 259 n n C3 H3 PGW sing 260 n n C3 H3A PGW sing 261 n n C04 C05 PGW sing 262 n n C04 O12 PGW sing 263 n n C04 H04 PGW sing 264 n n C04 H04A PGW sing 265 n n C4 C5 PGW sing 266 n n C4 H4 PGW sing 267 n n C4 H4A PGW sing 268 n n O04 C19 PGW doub 269 n n C05 H05 PGW sing 270 n n C5 C6 PGW sing 271 n n C5 H5 PGW sing 272 n n C5 H5A PGW sing 273 n n C06 C07 PGW sing 274 n n C06 H06 PGW sing 275 n n C06 H06A PGW sing 276 n n C6 C7 PGW sing 277 n n C6 H6 PGW sing 278 n n C6 H6A PGW sing 279 n n C07 H07 PGW sing 280 n n C07 H07A PGW sing 281 n n C7 C8 PGW sing 282 n n C7 H7 PGW sing 283 n n C7 H7A PGW sing 284 n n C08 C07 PGW sing 285 n n C08 H08 PGW sing 286 n n C08 H08A PGW sing 287 n n C8 C9 PGW sing 288 n n C8 H8 PGW sing 289 n n C8 H8A PGW sing 290 n n C09 C08 PGW sing 291 n n C09 C11 PGW sing 292 n n C09 H09 PGW sing 293 n n C09 H09A PGW sing 294 n n C9 C10 PGW doub 295 z n C10 C06 PGW sing 296 n n C11 H11 PGW sing 297 n n C11 H11A PGW sing 298 n n O11 C03 PGW sing 299 n n C12 C11 PGW sing 300 n n C12 H12 PGW sing 301 n n C12 H12A PGW sing 302 n n O12 P PGW sing 303 n n C13 C12 PGW sing 304 n n C13 C14 PGW sing 305 n n C13 H13 PGW sing 306 n n C13 H13A PGW sing 307 n n O13 HO13 PGW sing 308 n n C14 H14 PGW sing 309 n n C14 H14A PGW sing 310 n n C14 H14B PGW sing 311 n n O14 P PGW doub 312 n n C15 C16 PGW sing 313 n n C15 H15 PGW sing 314 n n C15 H15A PGW sing 315 n n C16 H16 PGW sing 316 n n C16 H16A PGW sing 317 n n C17 C16 PGW sing 318 n n C17 C18 PGW sing 319 n n C17 H17 PGW sing 320 n n C17 H17A PGW sing 321 n n C18 C28 PGW sing 322 n n C18 H18 PGW sing 323 n n C18 H18A PGW sing 324 n n C19 O03 PGW sing 325 n n C19 C20 PGW sing 326 n n C20 C21 PGW sing 327 n n C20 H20 PGW sing 328 n n C20 H20A PGW sing 329 n n C21 C22 PGW sing 330 n n C21 H21 PGW sing 331 n n C21 H21A PGW sing 332 n n C22 C23 PGW sing 333 n n C22 H22 PGW sing 334 n n C22 H22A PGW sing 335 n n C23 C24 PGW sing 336 n n C23 H23 PGW sing 337 n n C23 H23A PGW sing 338 n n C24 C25 PGW sing 339 n n C24 H24 PGW sing 340 n n C24 H24A PGW sing 341 n n C25 C26 PGW sing 342 n n C25 H25 PGW sing 343 n n C25 H25A PGW sing 344 n n C26 C27 PGW sing 345 n n C26 H26 PGW sing 346 n n C26 H26A PGW sing 347 n n C27 C15 PGW sing 348 n n C27 H27 PGW sing 349 n n C27 H27A PGW sing 350 n n C28 H28 PGW sing 351 n n C28 H28A PGW sing 352 n n C29 H29 PGW sing 353 n n C29 H29A PGW sing 354 n n C29 H29B PGW sing 355 n n C30 C28 PGW sing 356 n n C30 C29 PGW sing 357 n n C30 H30 PGW sing 358 n n C30 H30A PGW sing 359 n n C9 H9 PGW sing 360 n n C10 H10 PGW sing 361 n n # _atom_sites.entry_id 6BW5 _atom_sites.fract_transf_matrix[1][1] 0.004711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TUM A 1 501 409 TUM TUM . F 3 PGW A 1 502 410 PGW PGW . G 2 TUM B 1 501 409 TUM TUM . H 3 PGW B 1 502 410 PGW PGW . I 2 TUM C 1 501 409 TUM TUM . J 3 PGW C 1 502 410 PGW PGW . K 2 TUM D 1 501 409 TUM TUM . L 3 PGW D 1 502 410 PGW PGW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . J 3 49.131 18.877 56.02 1 101.94 ? CAD PGW 502 C 1 HETATM 2 O OAE PGW . . . J 3 49.233 18.843 54.619 1 69.85 ? OAE PGW 502 C 1 HETATM 3 O OAF PGW . . . J 3 49.293 16.521 55.839 1 91.13 ? OAF PGW 502 C 1 HETATM 4 P P PGW . . . J 3 50.413 17.99 60.425 1 122.84 ? P PGW 502 C 1 HETATM 5 C C01 PGW . . . J 3 53.721 20.379 61.735 1 77.16 ? C01 PGW 502 C 1 HETATM 6 C C1 PGW . . . J 3 55.36 17.109 61.219 1 80.87 ? C1 PGW 502 C 1 HETATM 7 O O01 PGW . . . J 3 54.727 18.205 61.831 1 93.76 ? O01 PGW 502 C 1 HETATM 8 C C02 PGW . . . J 3 54.164 19.144 60.953 1 95.7 ? C02 PGW 502 C 1 HETATM 9 C C2 PGW . . . J 3 55.835 15.933 62.076 1 72.13 ? C2 PGW 502 C 1 HETATM 10 O O02 PGW . . . J 3 55.522 17.095 60.044 1 66.42 ? O02 PGW 502 C 1 HETATM 11 C C03 PGW . . . J 3 52.962 18.539 60.222 1 96.61 ? C03 PGW 502 C 1 HETATM 12 C C3 PGW . . . J 3 56.535 14.831 61.273 1 63.07 ? C3 PGW 502 C 1 HETATM 13 O O03 PGW . . . J 3 54.328 21.5 61.159 1 60.52 ? O03 PGW 502 C 1 HETATM 14 C C04 PGW . . . J 3 49.416 17.413 58.062 1 107.12 ? C04 PGW 502 C 1 HETATM 15 C C4 PGW . . . J 3 56.006 13.435 61.601 1 63.6 ? C4 PGW 502 C 1 HETATM 16 C C05 PGW . . . J 3 49.752 17.602 56.581 1 103.94 ? C05 PGW 502 C 1 HETATM 17 C C5 PGW . . . J 3 56.098 12.481 60.411 1 57.74 ? C5 PGW 502 C 1 HETATM 18 C C06 PGW . . . J 3 57.558 9.832 55.999 1 36.6 ? C06 PGW 502 C 1 HETATM 19 C C6 PGW . . . J 3 55.202 11.255 60.576 1 50.15 ? C6 PGW 502 C 1 HETATM 20 C C07 PGW . . . J 3 58.746 8.981 56.437 1 40.39 ? C07 PGW 502 C 1 HETATM 21 C C7 PGW . . . J 3 54.681 10.727 59.242 1 65.42 ? C7 PGW 502 C 1 HETATM 22 C C08 PGW . . . J 3 59.947 9.873 56.737 1 36.72 ? C08 PGW 502 C 1 HETATM 23 C C8 PGW . . . J 3 55.788 10.581 58.2 1 49.6 ? C8 PGW 502 C 1 HETATM 24 C C09 PGW . . . J 3 60.935 9.276 57.729 1 28.34 ? C09 PGW 502 C 1 HETATM 25 C C9 PGW . . . J 3 55.466 9.41 57.276 1 42.86 ? C9 PGW 502 C 1 HETATM 26 C C10 PGW . . . J 3 56.269 9.07 56.287 1 36.23 ? C10 PGW 502 C 1 HETATM 27 C C11 PGW . . . J 3 61.952 10.328 58.152 1 29.07 ? C11 PGW 502 C 1 HETATM 28 O O11 PGW . . . J 3 51.871 18.395 61.084 1 109.05 ? O11 PGW 502 C 1 HETATM 29 C C12 PGW . . . J 3 62.878 9.822 59.246 1 19.76 ? C12 PGW 502 C 1 HETATM 30 O O12 PGW . . . J 3 50.571 17.684 58.81 1 117.87 ? O12 PGW 502 C 1 HETATM 31 C C13 PGW . . . J 3 63.588 10.975 59.943 1 23.51 ? C13 PGW 502 C 1 HETATM 32 O O13 PGW . . . J 3 49.442 19.131 60.617 1 116.39 ? O13 PGW 502 C 1 HETATM 33 C C14 PGW . . . J 3 64.066 10.572 61.33 1 34.99 ? C14 PGW 502 C 1 HETATM 34 O O14 PGW . . . J 3 49.881 16.757 61.116 1 105.73 ? O14 PGW 502 C 1 HETATM 35 H HAD PGW . . . J 3 48.197 18.927 56.277 1 122.33 ? HAD PGW 502 C 1 HETATM 36 H HADA PGW . . . J 3 49.606 19.65 56.363 1 122.33 ? HADA PGW 502 C 1 HETATM 37 H HOAE PGW . . . J 3 49.2 18.037 54.352 1 83.82 ? HOAE PGW 502 C 1 HETATM 38 H HOAF PGW . . . J 3 49.906 16.259 55.312 1 109.36 ? HOAF PGW 502 C 1 HETATM 39 H H01 PGW . . . J 3 52.756 20.469 61.687 1 92.59 ? H01 PGW 502 C 1 HETATM 40 H H01A PGW . . . J 3 53.997 20.297 62.661 1 92.59 ? H01A PGW 502 C 1 HETATM 41 H H02 PGW . . . J 3 54.832 19.406 60.3 1 114.84 ? H02 PGW 502 C 1 HETATM 42 H H2 PGW . . . J 3 55.068 15.548 62.527 1 86.56 ? H2 PGW 502 C 1 HETATM 43 H H2A PGW . . . J 3 56.453 16.267 62.745 1 86.56 ? H2A PGW 502 C 1 HETATM 44 H H03 PGW . . . J 3 52.712 19.116 59.483 1 115.94 ? H03 PGW 502 C 1 HETATM 45 H H03A PGW . . . J 3 53.209 17.668 59.875 1 115.94 ? H03A PGW 502 C 1 HETATM 46 H H3 PGW . . . J 3 57.485 14.859 61.466 1 75.68 ? H3 PGW 502 C 1 HETATM 47 H H3A PGW . . . J 3 56.402 15.002 60.327 1 75.68 ? H3A PGW 502 C 1 HETATM 48 H H04 PGW . . . J 3 48.709 18.026 58.318 1 128.54 ? H04 PGW 502 C 1 HETATM 49 H H04A PGW . . . J 3 49.131 16.499 58.219 1 128.54 ? H04A PGW 502 C 1 HETATM 50 H H4 PGW . . . J 3 55.078 13.508 61.874 1 76.32 ? H4 PGW 502 C 1 HETATM 51 H H4A PGW . . . J 3 56.522 13.07 62.337 1 76.32 ? H4A PGW 502 C 1 HETATM 52 H H05 PGW . . . J 3 50.716 17.658 56.486 1 124.72 ? H05 PGW 502 C 1 HETATM 53 H H5 PGW . . . J 3 57.017 12.187 60.315 1 69.29 ? H5 PGW 502 C 1 HETATM 54 H H5A PGW . . . J 3 55.834 12.956 59.607 1 69.29 ? H5A PGW 502 C 1 HETATM 55 H H06 PGW . . . J 3 57.558 10.668 56.491 1 43.92 ? H06 PGW 502 C 1 HETATM 56 H H06A PGW . . . J 3 57.622 10.015 55.048 1 43.92 ? H06A PGW 502 C 1 HETATM 57 H H6 PGW . . . J 3 54.446 11.493 61.136 1 60.18 ? H6 PGW 502 C 1 HETATM 58 H H6A PGW . . . J 3 55.709 10.554 61.014 1 60.18 ? H6A PGW 502 C 1 HETATM 59 H H07 PGW . . . J 3 58.976 8.36 55.728 1 48.47 ? H07 PGW 502 C 1 HETATM 60 H H07A PGW . . . J 3 58.509 8.483 57.235 1 48.47 ? H07A PGW 502 C 1 HETATM 61 H H7 PGW . . . J 3 54.01 11.34 58.903 1 78.5 ? H7 PGW 502 C 1 HETATM 62 H H7A PGW . . . J 3 54.27 9.86 59.387 1 78.5 ? H7A PGW 502 C 1 HETATM 63 H H08 PGW . . . J 3 59.624 10.715 57.093 1 44.07 ? H08 PGW 502 C 1 HETATM 64 H H08A PGW . . . J 3 60.415 10.049 55.905 1 44.07 ? H08A PGW 502 C 1 HETATM 65 H H8 PGW . . . J 3 56.633 10.417 58.647 1 59.52 ? H8 PGW 502 C 1 HETATM 66 H H8A PGW . . . J 3 55.851 11.396 57.678 1 59.52 ? H8A PGW 502 C 1 HETATM 67 H H09 PGW . . . J 3 61.397 8.531 57.314 1 34.01 ? H09 PGW 502 C 1 HETATM 68 H H09A PGW . . . J 3 60.455 8.961 58.511 1 34.01 ? H09A PGW 502 C 1 HETATM 69 H H11 PGW . . . J 3 61.479 11.11 58.477 1 34.88 ? H11 PGW 502 C 1 HETATM 70 H H11A PGW . . . J 3 62.484 10.579 57.381 1 34.88 ? H11A PGW 502 C 1 HETATM 71 H H12 PGW . . . J 3 63.541 9.231 58.854 1 23.71 ? H12 PGW 502 C 1 HETATM 72 H H12A PGW . . . J 3 62.358 9.327 59.899 1 23.71 ? H12A PGW 502 C 1 HETATM 73 H H13 PGW . . . J 3 62.975 11.723 60.023 1 28.21 ? H13 PGW 502 C 1 HETATM 74 H H13A PGW . . . J 3 64.351 11.247 59.41 1 28.21 ? H13A PGW 502 C 1 HETATM 75 H H14 PGW . . . J 3 64.544 11.313 61.735 1 41.98 ? H14 PGW 502 C 1 HETATM 76 H H14A PGW . . . J 3 64.657 9.807 61.258 1 41.98 ? H14A PGW 502 C 1 HETATM 77 H H14B PGW . . . J 3 63.302 10.341 61.881 1 41.98 ? H14B PGW 502 C 1 HETATM 78 H H9 PGW . . . J 3 54.689 8.919 57.418 1 51.43 ? H9 PGW 502 C 1 HETATM 79 H H10 PGW . . . J 3 56.038 8.35 55.745 1 43.48 ? H10 PGW 502 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 79 #