data_6BW5 # _model_server_result.job_id XGpnuzLBUN8i-dFmqZ0ndg _model_server_result.datetime_utc '2024-11-13 20:29:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 6BW5 # _exptl.entry_id 6BW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.53 _cell.angle_gamma 90 _cell.entry_id 6BW5 _cell.length_a 212.272 _cell.length_b 105.512 _cell.length_c 149.389 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 106 1_555 B SG CYS 106 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 C SG CYS 106 C CYS 106 1_555 D SG CYS 106 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 235 n n CAD HAD PGW sing 236 n n CAD HADA PGW sing 237 n n OAE CAD PGW sing 238 n n OAE HOAE PGW sing 239 n n OAF C05 PGW sing 240 n n OAF HOAF PGW sing 241 n n P O13 PGW sing 242 n n P O11 PGW sing 243 n n C01 O03 PGW sing 244 n n C01 C02 PGW sing 245 n n C01 H01 PGW sing 246 n n C01 H01A PGW sing 247 n n C1 C2 PGW sing 248 n n O01 C1 PGW sing 249 n n C02 O01 PGW sing 250 n n C02 H02 PGW sing 251 n n C2 C3 PGW sing 252 n n C2 H2 PGW sing 253 n n C2 H2A PGW sing 254 n n O02 C1 PGW doub 255 n n C03 C02 PGW sing 256 n n C03 H03 PGW sing 257 n n C03 H03A PGW sing 258 n n C3 C4 PGW sing 259 n n C3 H3 PGW sing 260 n n C3 H3A PGW sing 261 n n C04 C05 PGW sing 262 n n C04 O12 PGW sing 263 n n C04 H04 PGW sing 264 n n C04 H04A PGW sing 265 n n C4 C5 PGW sing 266 n n C4 H4 PGW sing 267 n n C4 H4A PGW sing 268 n n O04 C19 PGW doub 269 n n C05 H05 PGW sing 270 n n C5 C6 PGW sing 271 n n C5 H5 PGW sing 272 n n C5 H5A PGW sing 273 n n C06 C07 PGW sing 274 n n C06 H06 PGW sing 275 n n C06 H06A PGW sing 276 n n C6 C7 PGW sing 277 n n C6 H6 PGW sing 278 n n C6 H6A PGW sing 279 n n C07 H07 PGW sing 280 n n C07 H07A PGW sing 281 n n C7 C8 PGW sing 282 n n C7 H7 PGW sing 283 n n C7 H7A PGW sing 284 n n C08 C07 PGW sing 285 n n C08 H08 PGW sing 286 n n C08 H08A PGW sing 287 n n C8 C9 PGW sing 288 n n C8 H8 PGW sing 289 n n C8 H8A PGW sing 290 n n C09 C08 PGW sing 291 n n C09 C11 PGW sing 292 n n C09 H09 PGW sing 293 n n C09 H09A PGW sing 294 n n C9 C10 PGW doub 295 z n C10 C06 PGW sing 296 n n C11 H11 PGW sing 297 n n C11 H11A PGW sing 298 n n O11 C03 PGW sing 299 n n C12 C11 PGW sing 300 n n C12 H12 PGW sing 301 n n C12 H12A PGW sing 302 n n O12 P PGW sing 303 n n C13 C12 PGW sing 304 n n C13 C14 PGW sing 305 n n C13 H13 PGW sing 306 n n C13 H13A PGW sing 307 n n O13 HO13 PGW sing 308 n n C14 H14 PGW sing 309 n n C14 H14A PGW sing 310 n n C14 H14B PGW sing 311 n n O14 P PGW doub 312 n n C15 C16 PGW sing 313 n n C15 H15 PGW sing 314 n n C15 H15A PGW sing 315 n n C16 H16 PGW sing 316 n n C16 H16A PGW sing 317 n n C17 C16 PGW sing 318 n n C17 C18 PGW sing 319 n n C17 H17 PGW sing 320 n n C17 H17A PGW sing 321 n n C18 C28 PGW sing 322 n n C18 H18 PGW sing 323 n n C18 H18A PGW sing 324 n n C19 O03 PGW sing 325 n n C19 C20 PGW sing 326 n n C20 C21 PGW sing 327 n n C20 H20 PGW sing 328 n n C20 H20A PGW sing 329 n n C21 C22 PGW sing 330 n n C21 H21 PGW sing 331 n n C21 H21A PGW sing 332 n n C22 C23 PGW sing 333 n n C22 H22 PGW sing 334 n n C22 H22A PGW sing 335 n n C23 C24 PGW sing 336 n n C23 H23 PGW sing 337 n n C23 H23A PGW sing 338 n n C24 C25 PGW sing 339 n n C24 H24 PGW sing 340 n n C24 H24A PGW sing 341 n n C25 C26 PGW sing 342 n n C25 H25 PGW sing 343 n n C25 H25A PGW sing 344 n n C26 C27 PGW sing 345 n n C26 H26 PGW sing 346 n n C26 H26A PGW sing 347 n n C27 C15 PGW sing 348 n n C27 H27 PGW sing 349 n n C27 H27A PGW sing 350 n n C28 H28 PGW sing 351 n n C28 H28A PGW sing 352 n n C29 H29 PGW sing 353 n n C29 H29A PGW sing 354 n n C29 H29B PGW sing 355 n n C30 C28 PGW sing 356 n n C30 C29 PGW sing 357 n n C30 H30 PGW sing 358 n n C30 H30A PGW sing 359 n n C9 H9 PGW sing 360 n n C10 H10 PGW sing 361 n n # _atom_sites.entry_id 6BW5 _atom_sites.fract_transf_matrix[1][1] 0.004711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TUM A 1 501 409 TUM TUM . F 3 PGW A 1 502 410 PGW PGW . G 2 TUM B 1 501 409 TUM TUM . H 3 PGW B 1 502 410 PGW PGW . I 2 TUM C 1 501 409 TUM TUM . J 3 PGW C 1 502 410 PGW PGW . K 2 TUM D 1 501 409 TUM TUM . L 3 PGW D 1 502 410 PGW PGW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . L 3 59.571 -9.735 39.082 1 52.35 ? CAD PGW 502 D 1 HETATM 2 O OAE PGW . . . L 3 58.267 -10.244 39.176 1 53.18 ? OAE PGW 502 D 1 HETATM 3 O OAF PGW . . . L 3 59.649 -10.218 41.422 1 65.16 ? OAF PGW 502 D 1 HETATM 4 P P PGW . . . L 3 63.976 -10.741 40.761 1 104.02 ? P PGW 502 D 1 HETATM 5 C C01 PGW . . . L 3 66.604 -13.439 42.853 1 91.68 ? C01 PGW 502 D 1 HETATM 6 C C1 PGW . . . L 3 66.277 -10.362 44.854 1 75.41 ? C1 PGW 502 D 1 HETATM 7 O O01 PGW . . . L 3 66.75 -11.337 43.966 1 91.99 ? O01 PGW 502 D 1 HETATM 8 C C02 PGW . . . L 3 65.885 -12.415 43.729 1 98.93 ? C02 PGW 502 D 1 HETATM 9 C C2 PGW . . . L 3 67.099 -9.098 45.107 1 63 ? C2 PGW 502 D 1 HETATM 10 O O02 PGW . . . L 3 65.246 -10.517 45.418 1 66.86 ? O02 PGW 502 D 1 HETATM 11 C C03 PGW . . . L 3 64.619 -11.938 43.013 1 89.11 ? C03 PGW 502 D 1 HETATM 12 C C3 PGW . . . L 3 66.366 -8.096 45.999 1 57.78 ? C3 PGW 502 D 1 HETATM 13 O O03 PGW . . . L 3 67.446 -14.207 43.665 1 71.59 ? O03 PGW 502 D 1 HETATM 14 C C04 PGW . . . L 3 61.688 -9.513 40.388 1 64.55 ? C04 PGW 502 D 1 HETATM 15 C C4 PGW . . . L 3 66.738 -6.644 45.706 1 53.24 ? C4 PGW 502 D 1 HETATM 16 C C05 PGW . . . L 3 60.391 -10.305 40.238 1 65.57 ? C05 PGW 502 D 1 HETATM 17 C C5 PGW . . . L 3 65.624 -5.677 46.1 1 33.87 ? C5 PGW 502 D 1 HETATM 18 C C06 PGW . . . L 3 62.349 -2.379 48.892 1 16.64 ? C06 PGW 502 D 1 HETATM 19 C C6 PGW . . . L 3 66.026 -4.221 45.882 1 26.66 ? C6 PGW 502 D 1 HETATM 20 C C07 PGW . . . L 3 63.349 -1.658 49.792 1 20.99 ? C07 PGW 502 D 1 HETATM 21 C C7 PGW . . . L 3 64.837 -3.353 45.482 1 42.08 ? C7 PGW 502 D 1 HETATM 22 C C08 PGW . . . L 3 63.836 -2.62 50.865 1 19.13 ? C08 PGW 502 D 1 HETATM 23 C C8 PGW . . . L 3 63.718 -3.436 46.514 1 28.29 ? C8 PGW 502 D 1 HETATM 24 C C09 PGW . . . L 3 65.074 -2.147 51.603 1 19.38 ? C09 PGW 502 D 1 HETATM 25 C C9 PGW . . . L 3 62.916 -2.137 46.481 1 24.18 ? C9 PGW 502 D 1 HETATM 26 C C10 PGW . . . L 3 62.303 -1.663 47.548 1 14.32 ? C10 PGW 502 D 1 HETATM 27 C C11 PGW . . . L 3 65.854 -3.353 52.107 1 18.71 ? C11 PGW 502 D 1 HETATM 28 O O11 PGW . . . L 3 64.993 -11.013 42.031 1 97.72 ? O11 PGW 502 D 1 HETATM 29 C C12 PGW . . . L 3 67.166 -2.904 52.721 1 19.62 ? C12 PGW 502 D 1 HETATM 30 O O12 PGW . . . L 3 62.515 -10.191 41.293 1 77.32 ? O12 PGW 502 D 1 HETATM 31 C C13 PGW . . . L 3 68.295 -3.918 52.585 1 27.26 ? C13 PGW 502 D 1 HETATM 32 O O13 PGW . . . L 3 63.777 -12.026 39.993 1 104.14 ? O13 PGW 502 D 1 HETATM 33 C C14 PGW . . . L 3 69.656 -3.27 52.844 1 29.71 ? C14 PGW 502 D 1 HETATM 34 O O14 PGW . . . L 3 64.596 -9.712 39.846 1 107.38 ? O14 PGW 502 D 1 HETATM 35 H HAD PGW . . . L 3 59.55 -8.768 39.141 1 62.82 ? HAD PGW 502 D 1 HETATM 36 H HADA PGW . . . L 3 59.966 -10.003 38.238 1 62.82 ? HADA PGW 502 D 1 HETATM 37 H HOAE PGW . . . L 3 57.797 -9.939 38.537 1 63.81 ? HOAE PGW 502 D 1 HETATM 38 H HOAF PGW . . . L 3 58.82 -10.196 41.236 1 78.19 ? HOAF PGW 502 D 1 HETATM 39 H H01 PGW . . . L 3 65.953 -14.014 42.421 1 110.01 ? H01 PGW 502 D 1 HETATM 40 H H01A PGW . . . L 3 67.13 -12.98 42.179 1 110.01 ? H01A PGW 502 D 1 HETATM 41 H H02 PGW . . . L 3 65.642 -12.826 44.574 1 118.72 ? H02 PGW 502 D 1 HETATM 42 H H2 PGW . . . L 3 67.295 -8.676 44.256 1 75.6 ? H2 PGW 502 D 1 HETATM 43 H H2A PGW . . . L 3 67.934 -9.346 45.533 1 75.6 ? H2A PGW 502 D 1 HETATM 44 H H03 PGW . . . L 3 64.172 -12.693 42.599 1 106.94 ? H03 PGW 502 D 1 HETATM 45 H H03A PGW . . . L 3 64.023 -11.515 43.651 1 106.94 ? H03A PGW 502 D 1 HETATM 46 H H3 PGW . . . L 3 66.579 -8.291 46.925 1 69.33 ? H3 PGW 502 D 1 HETATM 47 H H3A PGW . . . L 3 65.411 -8.205 45.869 1 69.33 ? H3A PGW 502 D 1 HETATM 48 H H04 PGW . . . L 3 62.132 -9.445 39.528 1 77.46 ? H04 PGW 502 D 1 HETATM 49 H H04A PGW . . . L 3 61.493 -8.625 40.726 1 77.46 ? H04A PGW 502 D 1 HETATM 50 H H4 PGW . . . L 3 66.916 -6.549 44.758 1 63.89 ? H4 PGW 502 D 1 HETATM 51 H H4A PGW . . . L 3 67.54 -6.418 46.202 1 63.89 ? H4A PGW 502 D 1 HETATM 52 H H05 PGW . . . L 3 60.601 -11.234 40.057 1 78.68 ? H05 PGW 502 D 1 HETATM 53 H H5 PGW . . . L 3 65.409 -5.808 47.037 1 40.65 ? H5 PGW 502 D 1 HETATM 54 H H5A PGW . . . L 3 64.837 -5.87 45.566 1 40.65 ? H5A PGW 502 D 1 HETATM 55 H H06 PGW . . . L 3 62.63 -3.298 48.763 1 19.97 ? H06 PGW 502 D 1 HETATM 56 H H06A PGW . . . L 3 61.47 -2.361 49.302 1 19.97 ? H06A PGW 502 D 1 HETATM 57 H H6 PGW . . . L 3 66.696 -4.181 45.181 1 31.99 ? H6 PGW 502 D 1 HETATM 58 H H6A PGW . . . L 3 66.407 -3.874 46.703 1 31.99 ? H6A PGW 502 D 1 HETATM 59 H H07 PGW . . . L 3 62.919 -0.896 50.21 1 25.19 ? H07 PGW 502 D 1 HETATM 60 H H07A PGW . . . L 3 64.103 -1.355 49.261 1 25.19 ? H07A PGW 502 D 1 HETATM 61 H H7 PGW . . . L 3 64.5 -3.653 44.623 1 50.5 ? H7 PGW 502 D 1 HETATM 62 H H7A PGW . . . L 3 65.129 -2.431 45.404 1 50.5 ? H7A PGW 502 D 1 HETATM 63 H H08 PGW . . . L 3 64.033 -3.473 50.448 1 22.96 ? H08 PGW 502 D 1 HETATM 64 H H08A PGW . . . L 3 63.123 -2.749 51.51 1 22.96 ? H08A PGW 502 D 1 HETATM 65 H H8 PGW . . . L 3 64.099 -3.561 47.397 1 33.95 ? H8 PGW 502 D 1 HETATM 66 H H8A PGW . . . L 3 63.136 -4.183 46.302 1 33.95 ? H8A PGW 502 D 1 HETATM 67 H H09 PGW . . . L 3 64.81 -1.595 52.356 1 23.26 ? H09 PGW 502 D 1 HETATM 68 H H09A PGW . . . L 3 65.631 -1.629 51.002 1 23.26 ? H09A PGW 502 D 1 HETATM 69 H H11 PGW . . . L 3 66.035 -3.951 51.365 1 22.45 ? H11 PGW 502 D 1 HETATM 70 H H11A PGW . . . L 3 65.329 -3.819 52.776 1 22.45 ? H11A PGW 502 D 1 HETATM 71 H H12 PGW . . . L 3 67.02 -2.729 53.664 1 23.54 ? H12 PGW 502 D 1 HETATM 72 H H12A PGW . . . L 3 67.44 -2.078 52.293 1 23.54 ? H12A PGW 502 D 1 HETATM 73 H H13 PGW . . . L 3 68.285 -4.286 51.688 1 32.71 ? H13 PGW 502 D 1 HETATM 74 H H13A PGW . . . L 3 68.157 -4.634 53.224 1 32.71 ? H13A PGW 502 D 1 HETATM 75 H H14 PGW . . . L 3 70.351 -3.944 52.787 1 35.66 ? H14 PGW 502 D 1 HETATM 76 H H14A PGW . . . L 3 69.662 -2.874 53.73 1 35.66 ? H14A PGW 502 D 1 HETATM 77 H H14B PGW . . . L 3 69.817 -2.581 52.181 1 35.66 ? H14B PGW 502 D 1 HETATM 78 H H9 PGW . . . L 3 62.859 -1.664 45.683 1 29.02 ? H9 PGW 502 D 1 HETATM 79 H H10 PGW . . . L 3 61.827 -0.867 47.477 1 17.18 ? H10 PGW 502 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 242 _model_server_stats.query_time_ms 495 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 79 #