data_6BW6
#
_model_server_result.job_id            SYqfSmbTdXaFdR9ns770tA 
_model_server_result.datetime_utc      '2024-11-26 12:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bw6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6BW6 
#
_exptl.entry_id    6BW6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.49 
_cell.angle_gamma         90 
_cell.entry_id            6BW6 
_cell.length_a            210.615 
_cell.length_b            105.363 
_cell.length_c            148.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BW6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 235 n n 
CAD HAD PGW sing 236 n n 
CAD HADA PGW sing 237 n n 
OAE CAD PGW sing 238 n n 
OAE HOAE PGW sing 239 n n 
OAF C05 PGW sing 240 n n 
OAF HOAF PGW sing 241 n n 
P O13 PGW sing 242 n n 
P O11 PGW sing 243 n n 
C01 O03 PGW sing 244 n n 
C01 C02 PGW sing 245 n n 
C01 H01 PGW sing 246 n n 
C01 H01A PGW sing 247 n n 
C1 C2 PGW sing 248 n n 
O01 C1 PGW sing 249 n n 
C02 O01 PGW sing 250 n n 
C02 H02 PGW sing 251 n n 
C2 C3 PGW sing 252 n n 
C2 H2 PGW sing 253 n n 
C2 H2A PGW sing 254 n n 
O02 C1 PGW doub 255 n n 
C03 C02 PGW sing 256 n n 
C03 H03 PGW sing 257 n n 
C03 H03A PGW sing 258 n n 
C3 C4 PGW sing 259 n n 
C3 H3 PGW sing 260 n n 
C3 H3A PGW sing 261 n n 
C04 C05 PGW sing 262 n n 
C04 O12 PGW sing 263 n n 
C04 H04 PGW sing 264 n n 
C04 H04A PGW sing 265 n n 
C4 C5 PGW sing 266 n n 
C4 H4 PGW sing 267 n n 
C4 H4A PGW sing 268 n n 
O04 C19 PGW doub 269 n n 
C05 H05 PGW sing 270 n n 
C5 C6 PGW sing 271 n n 
C5 H5 PGW sing 272 n n 
C5 H5A PGW sing 273 n n 
C06 C07 PGW sing 274 n n 
C06 H06 PGW sing 275 n n 
C06 H06A PGW sing 276 n n 
C6 C7 PGW sing 277 n n 
C6 H6 PGW sing 278 n n 
C6 H6A PGW sing 279 n n 
C07 H07 PGW sing 280 n n 
C07 H07A PGW sing 281 n n 
C7 C8 PGW sing 282 n n 
C7 H7 PGW sing 283 n n 
C7 H7A PGW sing 284 n n 
C08 C07 PGW sing 285 n n 
C08 H08 PGW sing 286 n n 
C08 H08A PGW sing 287 n n 
C8 C9 PGW sing 288 n n 
C8 H8 PGW sing 289 n n 
C8 H8A PGW sing 290 n n 
C09 C08 PGW sing 291 n n 
C09 C11 PGW sing 292 n n 
C09 H09 PGW sing 293 n n 
C09 H09A PGW sing 294 n n 
C9 C10 PGW doub 295 z n 
C10 C06 PGW sing 296 n n 
C11 H11 PGW sing 297 n n 
C11 H11A PGW sing 298 n n 
O11 C03 PGW sing 299 n n 
C12 C11 PGW sing 300 n n 
C12 H12 PGW sing 301 n n 
C12 H12A PGW sing 302 n n 
O12 P PGW sing 303 n n 
C13 C12 PGW sing 304 n n 
C13 C14 PGW sing 305 n n 
C13 H13 PGW sing 306 n n 
C13 H13A PGW sing 307 n n 
O13 HO13 PGW sing 308 n n 
C14 H14 PGW sing 309 n n 
C14 H14A PGW sing 310 n n 
C14 H14B PGW sing 311 n n 
O14 P PGW doub 312 n n 
C15 C16 PGW sing 313 n n 
C15 H15 PGW sing 314 n n 
C15 H15A PGW sing 315 n n 
C16 H16 PGW sing 316 n n 
C16 H16A PGW sing 317 n n 
C17 C16 PGW sing 318 n n 
C17 C18 PGW sing 319 n n 
C17 H17 PGW sing 320 n n 
C17 H17A PGW sing 321 n n 
C18 C28 PGW sing 322 n n 
C18 H18 PGW sing 323 n n 
C18 H18A PGW sing 324 n n 
C19 O03 PGW sing 325 n n 
C19 C20 PGW sing 326 n n 
C20 C21 PGW sing 327 n n 
C20 H20 PGW sing 328 n n 
C20 H20A PGW sing 329 n n 
C21 C22 PGW sing 330 n n 
C21 H21 PGW sing 331 n n 
C21 H21A PGW sing 332 n n 
C22 C23 PGW sing 333 n n 
C22 H22 PGW sing 334 n n 
C22 H22A PGW sing 335 n n 
C23 C24 PGW sing 336 n n 
C23 H23 PGW sing 337 n n 
C23 H23A PGW sing 338 n n 
C24 C25 PGW sing 339 n n 
C24 H24 PGW sing 340 n n 
C24 H24A PGW sing 341 n n 
C25 C26 PGW sing 342 n n 
C25 H25 PGW sing 343 n n 
C25 H25A PGW sing 344 n n 
C26 C27 PGW sing 345 n n 
C26 H26 PGW sing 346 n n 
C26 H26A PGW sing 347 n n 
C27 C15 PGW sing 348 n n 
C27 H27 PGW sing 349 n n 
C27 H27A PGW sing 350 n n 
C28 H28 PGW sing 351 n n 
C28 H28A PGW sing 352 n n 
C29 H29 PGW sing 353 n n 
C29 H29A PGW sing 354 n n 
C29 H29B PGW sing 355 n n 
C30 C28 PGW sing 356 n n 
C30 C29 PGW sing 357 n n 
C30 H30 PGW sing 358 n n 
C30 H30A PGW sing 359 n n 
C9 H9 PGW sing 360 n n 
C10 H10 PGW sing 361 n n 
#
_atom_sites.entry_id                     6BW6 
_atom_sites.fract_transf_matrix[1][1]    0.004748 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001139 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TUM A 1 501 409 TUM TUM . 
F 3 PGW A 1 502 410 PGW PGW . 
G 3 PGW B 1 501 410 PGW PGW . 
H 2 TUM B 1 502 409 TUM TUM . 
I 2 TUM C 1 501 409 TUM TUM . 
J 3 PGW C 1 502 410 PGW PGW . 
K 3 PGW C 1 503 410 PGW PGW . 
L 2 TUM D 1 501 409 TUM TUM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . F 3 24.841 23.184 37.288 1 70.33 ? CAD PGW 502 A 1 
HETATM 2 O OAE PGW . . . F 3 26.047 22.787 36.692 1 64.28 ? OAE PGW 502 A 1 
HETATM 3 O OAF PGW . . . F 3 25.208 25.186 36.058 1 76.73 ? OAF PGW 502 A 1 
HETATM 4 P P PGW . . . F 3 21.725 25.748 35.035 1 110.31 ? P PGW 502 A 1 
HETATM 5 C C01 PGW . . . F 3 16.939 24.448 33.805 1 70.55 ? C01 PGW 502 A 1 
HETATM 6 C C1 PGW . . . F 3 19.114 23.285 31.503 1 93.79 ? C1 PGW 502 A 1 
HETATM 7 O O01 PGW . . . F 3 18.778 24.398 32.287 1 108.06 ? O01 PGW 502 A 1 
HETATM 8 C C02 PGW . . . F 3 18.425 24.152 33.62 1 87.42 ? C02 PGW 502 A 1 
HETATM 9 C C2 PGW . . . F 3 19.333 23.466 30.003 1 76.93 ? C2 PGW 502 A 1 
HETATM 10 O O02 PGW . . . F 3 19.225 22.204 31.976 1 76.76 ? O02 PGW 502 A 1 
HETATM 11 C C03 PGW . . . F 3 19.234 25.06 34.542 1 74.32 ? C03 PGW 502 A 1 
HETATM 12 C C3 PGW . . . F 3 20.007 22.244 29.382 1 70.32 ? C3 PGW 502 A 1 
HETATM 13 O O03 PGW . . . F 3 16.656 25.674 33.191 1 60.71 ? O03 PGW 502 A 1 
HETATM 14 C C04 PGW . . . F 3 23.057 24.945 37.141 1 72.04 ? C04 PGW 502 A 1 
HETATM 15 C C4 PGW . . . F 3 20.638 22.54 28.02 1 68.87 ? C4 PGW 502 A 1 
HETATM 16 C C05 PGW . . . F 3 24.213 24.26 36.405 1 72.21 ? C05 PGW 502 A 1 
HETATM 17 C C5 PGW . . . F 3 21.872 21.685 27.737 1 54.08 ? C5 PGW 502 A 1 
HETATM 18 C C06 PGW . . . F 3 24.945 17.871 25.315 1 28.2 ? C06 PGW 502 A 1 
HETATM 19 C C6 PGW . . . F 3 23.103 22.547 27.486 1 59.5 ? C6 PGW 502 A 1 
HETATM 20 C C07 PGW . . . F 3 24.679 17.409 23.885 1 24.14 ? C07 PGW 502 A 1 
HETATM 21 C C7 PGW . . . F 3 24.404 21.749 27.443 1 62.32 ? C7 PGW 502 A 1 
HETATM 22 C C08 PGW . . . F 3 23.297 16.772 23.737 1 27.15 ? C08 PGW 502 A 1 
HETATM 23 C C8 PGW . . . F 3 24.312 20.45 26.644 1 35.99 ? C8 PGW 502 A 1 
HETATM 24 C C09 PGW . . . F 3 22.262 17.764 23.209 1 40.05 ? C09 PGW 502 A 1 
HETATM 25 C C9 PGW . . . F 3 25.619 20.224 25.887 1 38.34 ? C9 PGW 502 A 1 
HETATM 26 C C10 PGW . . . F 3 25.891 19.077 25.289 1 35.91 ? C10 PGW 502 A 1 
HETATM 27 C C11 PGW . . . F 3 20.831 17.259 23.362 1 32.28 ? C11 PGW 502 A 1 
HETATM 28 O O11 PGW . . . F 3 20.546 25.14 34.056 1 78.3 ? O11 PGW 502 A 1 
HETATM 29 C C12 PGW . . . F 3 19.934 17.811 22.261 1 18.19 ? C12 PGW 502 A 1 
HETATM 30 O O12 PGW . . . F 3 21.901 24.793 36.365 1 84.35 ? O12 PGW 502 A 1 
HETATM 31 C C13 PGW . . . F 3 18.455 17.733 22.629 1 24.87 ? C13 PGW 502 A 1 
HETATM 32 O O13 PGW . . . F 3 21.364 27.153 35.454 1 90.39 ? O13 PGW 502 A 1 
HETATM 33 C C14 PGW . . . F 3 17.571 18.496 21.643 1 43.26 ? C14 PGW 502 A 1 
HETATM 34 O O14 PGW . . . F 3 23.027 25.768 34.271 1 83.38 ? O14 PGW 502 A 1 
HETATM 35 H HAD PGW . . . F 3 24.242 22.424 37.355 1 84.39 ? HAD PGW 502 A 1 
HETATM 36 H HADA PGW . . . F 3 25.015 23.544 38.171 1 84.39 ? HADA PGW 502 A 1 
HETATM 37 H HOAE PGW . . . F 3 26.193 23.265 36.004 1 77.14 ? HOAE PGW 502 A 1 
HETATM 38 H HOAF PGW . . . F 3 24.959 25.967 36.283 1 92.08 ? HOAF PGW 502 A 1 
HETATM 39 H H01 PGW . . . F 3 16.412 23.747 33.392 1 84.66 ? H01 PGW 502 A 1 
HETATM 40 H H01A PGW . . . F 3 16.732 24.501 34.751 1 84.66 ? H01A PGW 502 A 1 
HETATM 41 H H02 PGW . . . F 3 18.602 23.224 33.838 1 104.9 ? H02 PGW 502 A 1 
HETATM 42 H H2 PGW . . . F 3 19.893 24.245 29.857 1 92.32 ? H2 PGW 502 A 1 
HETATM 43 H H2A PGW . . . F 3 18.475 23.607 29.573 1 92.32 ? H2A PGW 502 A 1 
HETATM 44 H H03 PGW . . . F 3 19.241 24.688 35.438 1 89.19 ? H03 PGW 502 A 1 
HETATM 45 H H03A PGW . . . F 3 18.838 25.946 34.559 1 89.19 ? H03A PGW 502 A 1 
HETATM 46 H H3 PGW . . . F 3 19.345 21.544 29.272 1 84.38 ? H3 PGW 502 A 1 
HETATM 47 H H3A PGW . . . F 3 20.699 21.928 29.984 1 84.38 ? H3A PGW 502 A 1 
HETATM 48 H H04 PGW . . . F 3 22.928 24.53 38.008 1 86.45 ? H04 PGW 502 A 1 
HETATM 49 H H04A PGW . . . F 3 23.254 25.888 37.255 1 86.45 ? H04A PGW 502 A 1 
HETATM 50 H H4 PGW . . . F 3 20.894 23.475 27.992 1 82.65 ? H4 PGW 502 A 1 
HETATM 51 H H4A PGW . . . F 3 19.979 22.375 27.328 1 82.65 ? H4A PGW 502 A 1 
HETATM 52 H H05 PGW . . . F 3 23.871 23.845 35.597 1 86.65 ? H05 PGW 502 A 1 
HETATM 53 H H5 PGW . . . F 3 21.705 21.136 26.955 1 64.9 ? H5 PGW 502 A 1 
HETATM 54 H H5A PGW . . . F 3 22.04 21.109 28.499 1 64.9 ? H5A PGW 502 A 1 
HETATM 55 H H06 PGW . . . F 3 24.108 18.126 25.734 1 33.84 ? H06 PGW 502 A 1 
HETATM 56 H H06A PGW . . . F 3 25.353 17.15 25.818 1 33.84 ? H06A PGW 502 A 1 
HETATM 57 H H6 PGW . . . F 3 23.168 23.209 28.192 1 71.4 ? H6 PGW 502 A 1 
HETATM 58 H H6A PGW . . . F 3 22.992 23.006 26.638 1 71.4 ? H6A PGW 502 A 1 
HETATM 59 H H07 PGW . . . F 3 25.354 16.76 23.633 1 28.97 ? H07 PGW 502 A 1 
HETATM 60 H H07A PGW . . . F 3 24.739 18.174 23.29 1 28.97 ? H07A PGW 502 A 1 
HETATM 61 H H7 PGW . . . F 3 24.663 21.533 28.353 1 74.79 ? H7 PGW 502 A 1 
HETATM 62 H H7A PGW . . . F 3 25.094 22.305 27.049 1 74.79 ? H7A PGW 502 A 1 
HETATM 63 H H08 PGW . . . F 3 23.007 16.445 24.603 1 32.58 ? H08 PGW 502 A 1 
HETATM 64 H H08A PGW . . . F 3 23.359 16.024 23.122 1 32.58 ? H08A PGW 502 A 1 
HETATM 65 H H8 PGW . . . F 3 23.579 20.511 26.011 1 43.19 ? H8 PGW 502 A 1 
HETATM 66 H H8A PGW . . . F 3 24.156 19.708 27.249 1 43.19 ? H8A PGW 502 A 1 
HETATM 67 H H09 PGW . . . F 3 22.437 17.927 22.269 1 48.06 ? H09 PGW 502 A 1 
HETATM 68 H H09A PGW . . . F 3 22.353 18.598 23.695 1 48.06 ? H09A PGW 502 A 1 
HETATM 69 H H11 PGW . . . F 3 20.486 17.54 24.224 1 38.73 ? H11 PGW 502 A 1 
HETATM 70 H H11A PGW . . . F 3 20.829 16.29 23.319 1 38.73 ? H11A PGW 502 A 1 
HETATM 71 H H12 PGW . . . F 3 20.083 17.301 21.449 1 21.83 ? H12 PGW 502 A 1 
HETATM 72 H H12A PGW . . . F 3 20.169 18.738 22.098 1 21.83 ? H12A PGW 502 A 1 
HETATM 73 H H13 PGW . . . F 3 18.332 18.107 23.515 1 29.84 ? H13 PGW 502 A 1 
HETATM 74 H H13A PGW . . . F 3 18.183 16.802 22.64 1 29.84 ? H13A PGW 502 A 1 
HETATM 75 H H14 PGW . . . F 3 16.64 18.39 21.894 1 51.91 ? H14 PGW 502 A 1 
HETATM 76 H H14A PGW . . . F 3 17.706 18.145 20.749 1 51.91 ? H14A PGW 502 A 1 
HETATM 77 H H14B PGW . . . F 3 17.805 19.437 21.66 1 51.91 ? H14B PGW 502 A 1 
HETATM 78 H H9 PGW . . . F 3 26.236 20.918 25.834 1 46.01 ? H9 PGW 502 A 1 
HETATM 79 H H10 PGW . . . F 3 26.703 18.993 24.842 1 43.1 ? H10 PGW 502 A 1 
#
_model_server_stats.io_time_ms              104 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           79 
#