data_6BW6
#
_model_server_result.job_id            XsM0wV8Dp1JyWU9aw8yBLQ 
_model_server_result.datetime_utc      '2024-11-29 22:20:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bw6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    6BW6 
#
_exptl.entry_id    6BW6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.49 
_cell.angle_gamma         90 
_cell.entry_id            6BW6 
_cell.length_a            210.615 
_cell.length_b            105.363 
_cell.length_c            148.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BW6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 235 n n 
CAD HAD PGW sing 236 n n 
CAD HADA PGW sing 237 n n 
OAE CAD PGW sing 238 n n 
OAE HOAE PGW sing 239 n n 
OAF C05 PGW sing 240 n n 
OAF HOAF PGW sing 241 n n 
P O13 PGW sing 242 n n 
P O11 PGW sing 243 n n 
C01 O03 PGW sing 244 n n 
C01 C02 PGW sing 245 n n 
C01 H01 PGW sing 246 n n 
C01 H01A PGW sing 247 n n 
C1 C2 PGW sing 248 n n 
O01 C1 PGW sing 249 n n 
C02 O01 PGW sing 250 n n 
C02 H02 PGW sing 251 n n 
C2 C3 PGW sing 252 n n 
C2 H2 PGW sing 253 n n 
C2 H2A PGW sing 254 n n 
O02 C1 PGW doub 255 n n 
C03 C02 PGW sing 256 n n 
C03 H03 PGW sing 257 n n 
C03 H03A PGW sing 258 n n 
C3 C4 PGW sing 259 n n 
C3 H3 PGW sing 260 n n 
C3 H3A PGW sing 261 n n 
C04 C05 PGW sing 262 n n 
C04 O12 PGW sing 263 n n 
C04 H04 PGW sing 264 n n 
C04 H04A PGW sing 265 n n 
C4 C5 PGW sing 266 n n 
C4 H4 PGW sing 267 n n 
C4 H4A PGW sing 268 n n 
O04 C19 PGW doub 269 n n 
C05 H05 PGW sing 270 n n 
C5 C6 PGW sing 271 n n 
C5 H5 PGW sing 272 n n 
C5 H5A PGW sing 273 n n 
C06 C07 PGW sing 274 n n 
C06 H06 PGW sing 275 n n 
C06 H06A PGW sing 276 n n 
C6 C7 PGW sing 277 n n 
C6 H6 PGW sing 278 n n 
C6 H6A PGW sing 279 n n 
C07 H07 PGW sing 280 n n 
C07 H07A PGW sing 281 n n 
C7 C8 PGW sing 282 n n 
C7 H7 PGW sing 283 n n 
C7 H7A PGW sing 284 n n 
C08 C07 PGW sing 285 n n 
C08 H08 PGW sing 286 n n 
C08 H08A PGW sing 287 n n 
C8 C9 PGW sing 288 n n 
C8 H8 PGW sing 289 n n 
C8 H8A PGW sing 290 n n 
C09 C08 PGW sing 291 n n 
C09 C11 PGW sing 292 n n 
C09 H09 PGW sing 293 n n 
C09 H09A PGW sing 294 n n 
C9 C10 PGW doub 295 z n 
C10 C06 PGW sing 296 n n 
C11 H11 PGW sing 297 n n 
C11 H11A PGW sing 298 n n 
O11 C03 PGW sing 299 n n 
C12 C11 PGW sing 300 n n 
C12 H12 PGW sing 301 n n 
C12 H12A PGW sing 302 n n 
O12 P PGW sing 303 n n 
C13 C12 PGW sing 304 n n 
C13 C14 PGW sing 305 n n 
C13 H13 PGW sing 306 n n 
C13 H13A PGW sing 307 n n 
O13 HO13 PGW sing 308 n n 
C14 H14 PGW sing 309 n n 
C14 H14A PGW sing 310 n n 
C14 H14B PGW sing 311 n n 
O14 P PGW doub 312 n n 
C15 C16 PGW sing 313 n n 
C15 H15 PGW sing 314 n n 
C15 H15A PGW sing 315 n n 
C16 H16 PGW sing 316 n n 
C16 H16A PGW sing 317 n n 
C17 C16 PGW sing 318 n n 
C17 C18 PGW sing 319 n n 
C17 H17 PGW sing 320 n n 
C17 H17A PGW sing 321 n n 
C18 C28 PGW sing 322 n n 
C18 H18 PGW sing 323 n n 
C18 H18A PGW sing 324 n n 
C19 O03 PGW sing 325 n n 
C19 C20 PGW sing 326 n n 
C20 C21 PGW sing 327 n n 
C20 H20 PGW sing 328 n n 
C20 H20A PGW sing 329 n n 
C21 C22 PGW sing 330 n n 
C21 H21 PGW sing 331 n n 
C21 H21A PGW sing 332 n n 
C22 C23 PGW sing 333 n n 
C22 H22 PGW sing 334 n n 
C22 H22A PGW sing 335 n n 
C23 C24 PGW sing 336 n n 
C23 H23 PGW sing 337 n n 
C23 H23A PGW sing 338 n n 
C24 C25 PGW sing 339 n n 
C24 H24 PGW sing 340 n n 
C24 H24A PGW sing 341 n n 
C25 C26 PGW sing 342 n n 
C25 H25 PGW sing 343 n n 
C25 H25A PGW sing 344 n n 
C26 C27 PGW sing 345 n n 
C26 H26 PGW sing 346 n n 
C26 H26A PGW sing 347 n n 
C27 C15 PGW sing 348 n n 
C27 H27 PGW sing 349 n n 
C27 H27A PGW sing 350 n n 
C28 H28 PGW sing 351 n n 
C28 H28A PGW sing 352 n n 
C29 H29 PGW sing 353 n n 
C29 H29A PGW sing 354 n n 
C29 H29B PGW sing 355 n n 
C30 C28 PGW sing 356 n n 
C30 C29 PGW sing 357 n n 
C30 H30 PGW sing 358 n n 
C30 H30A PGW sing 359 n n 
C9 H9 PGW sing 360 n n 
C10 H10 PGW sing 361 n n 
#
_atom_sites.entry_id                     6BW6 
_atom_sites.fract_transf_matrix[1][1]    0.004748 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001139 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TUM A 1 501 409 TUM TUM . 
F 3 PGW A 1 502 410 PGW PGW . 
G 3 PGW B 1 501 410 PGW PGW . 
H 2 TUM B 1 502 409 TUM TUM . 
I 2 TUM C 1 501 409 TUM TUM . 
J 3 PGW C 1 502 410 PGW PGW . 
K 3 PGW C 1 503 410 PGW PGW . 
L 2 TUM D 1 501 409 TUM TUM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . J 3 59.142 -8.861 39.6 1 53.13 ? CAD PGW 502 C 1 
HETATM 2 O OAE PGW . . . J 3 57.922 -8.227 39.873 1 50.95 ? OAE PGW 502 C 1 
HETATM 3 O OAF PGW . . . J 3 59.644 -7.084 38.085 1 40.75 ? OAF PGW 502 C 1 
HETATM 4 P P PGW . . . J 3 63.739 -9.204 39.875 1 98.31 ? P PGW 502 C 1 
HETATM 5 C C01 PGW . . . J 3 67.563 -10.041 41.501 1 77.93 ? C01 PGW 502 C 1 
HETATM 6 C C1 PGW . . . J 3 66.389 -7.968 44.302 1 71.07 ? C1 PGW 502 C 1 
HETATM 7 O O01 PGW . . . J 3 67.206 -8.625 43.377 1 78.69 ? O01 PGW 502 C 1 
HETATM 8 C C02 PGW . . . J 3 66.53 -9.363 42.401 1 83.85 ? C02 PGW 502 C 1 
HETATM 9 C C2 PGW . . . J 3 66.956 -6.755 45.03 1 55.26 ? C2 PGW 502 C 1 
HETATM 10 O O02 PGW . . . J 3 65.285 -8.345 44.515 1 52.61 ? O02 PGW 502 C 1 
HETATM 11 C C03 PGW . . . J 3 65.643 -8.461 41.537 1 73.39 ? C03 PGW 502 C 1 
HETATM 12 C C3 PGW . . . J 3 65.875 -5.793 45.527 1 50.69 ? C3 PGW 502 C 1 
HETATM 13 O O03 PGW . . . J 3 68.533 -9.093 41.161 1 70.42 ? O03 PGW 502 C 1 
HETATM 14 C C04 PGW . . . J 3 61.472 -8.488 38.805 1 40.01 ? C04 PGW 502 C 1 
HETATM 15 C C4 PGW . . . J 3 65.911 -4.447 44.806 1 43.16 ? C4 PGW 502 C 1 
HETATM 16 C C05 PGW . . . J 3 60.157 -7.802 39.176 1 43.36 ? C05 PGW 502 C 1 
HETATM 17 C C5 PGW . . . J 3 65.424 -3.303 45.686 1 40.9 ? C5 PGW 502 C 1 
HETATM 18 C C06 PGW . . . J 3 61.815 0.035 48.084 1 12.54 ? C06 PGW 502 C 1 
HETATM 19 C C6 PGW . . . J 3 65.068 -2.079 44.851 1 17.79 ? C6 PGW 502 C 1 
HETATM 20 C C07 PGW . . . J 3 62.437 1.125 48.954 1 9.53 ? C07 PGW 502 C 1 
HETATM 21 C C7 PGW . . . J 3 63.573 -2.012 44.557 1 28.08 ? C7 PGW 502 C 1 
HETATM 22 C C08 PGW . . . J 3 63.011 0.569 50.255 1 10.83 ? C08 PGW 502 C 1 
HETATM 23 C C8 PGW . . . J 3 62.766 -1.628 45.795 1 25.88 ? C8 PGW 502 C 1 
HETATM 24 C C09 PGW . . . J 3 64.503 0.284 50.124 1 10.58 ? C09 PGW 502 C 1 
HETATM 25 C C9 PGW . . . J 3 62.207 -0.214 45.617 1 38.57 ? C9 PGW 502 C 1 
HETATM 26 C C10 PGW . . . J 3 61.791 0.521 46.633 1 26.38 ? C10 PGW 502 C 1 
HETATM 27 C C11 PGW . . . J 3 65.081 -0.453 51.327 1 12.73 ? C11 PGW 502 C 1 
HETATM 28 O O11 PGW . . . J 3 64.415 -9.114 41.374 1 75.12 ? O11 PGW 502 C 1 
HETATM 29 C C12 PGW . . . J 3 66.552 -0.098 51.521 1 12.7 ? C12 PGW 502 C 1 
HETATM 30 O O12 PGW . . . J 3 62.399 -8.247 39.824 1 40.96 ? O12 PGW 502 C 1 
HETATM 31 C C13 PGW . . . J 3 67.375 -1.275 52.039 1 28.23 ? C13 PGW 502 C 1 
HETATM 32 O O13 PGW . . . J 3 63.319 -10.628 39.607 1 95.29 ? O13 PGW 502 C 1 
HETATM 33 C C14 PGW . . . J 3 68.855 -0.914 52.182 1 21.58 ? C14 PGW 502 C 1 
HETATM 34 O O14 PGW . . . J 3 64.742 -8.778 38.829 1 63.3 ? O14 PGW 502 C 1 
HETATM 35 H HAD PGW . . . J 3 59.458 -9.316 40.397 1 63.76 ? HAD PGW 502 C 1 
HETATM 36 H HADA PGW . . . J 3 59.022 -9.504 38.884 1 63.76 ? HADA PGW 502 C 1 
HETATM 37 H HOAE PGW . . . J 3 57.994 -7.394 39.716 1 61.14 ? HOAE PGW 502 C 1 
HETATM 38 H HOAF PGW . . . J 3 60.174 -7.154 37.425 1 48.9 ? HOAF PGW 502 C 1 
HETATM 39 H H01 PGW . . . J 3 67.977 -10.778 41.976 1 93.52 ? H01 PGW 502 C 1 
HETATM 40 H H01A PGW . . . J 3 67.131 -10.37 40.698 1 93.52 ? H01A PGW 502 C 1 
HETATM 41 H H02 PGW . . . J 3 65.983 -10.039 42.83 1 100.62 ? H02 PGW 502 C 1 
HETATM 42 H H2 PGW . . . J 3 67.544 -6.276 44.425 1 66.31 ? H2 PGW 502 C 1 
HETATM 43 H H2A PGW . . . J 3 67.474 -7.062 45.791 1 66.31 ? H2A PGW 502 C 1 
HETATM 44 H H03 PGW . . . J 3 66.058 -8.317 40.672 1 88.07 ? H03 PGW 502 C 1 
HETATM 45 H H03A PGW . . . J 3 65.506 -7.611 41.982 1 88.07 ? H03A PGW 502 C 1 
HETATM 46 H H3 PGW . . . J 3 66.002 -5.643 46.477 1 60.83 ? H3 PGW 502 C 1 
HETATM 47 H H3A PGW . . . J 3 65.005 -6.2 45.388 1 60.83 ? H3A PGW 502 C 1 
HETATM 48 H H04 PGW . . . J 3 61.327 -9.443 38.715 1 48.01 ? H04 PGW 502 C 1 
HETATM 49 H H04A PGW . . . J 3 61.804 -8.127 37.969 1 48.01 ? H04A PGW 502 C 1 
HETATM 50 H H4 PGW . . . J 3 65.348 -4.499 44.018 1 51.79 ? H4 PGW 502 C 1 
HETATM 51 H H4A PGW . . . J 3 66.823 -4.264 44.529 1 51.79 ? H4A PGW 502 C 1 
HETATM 52 H H05 PGW . . . J 3 60.312 -7.193 39.915 1 52.03 ? H05 PGW 502 C 1 
HETATM 53 H H5 PGW . . . J 3 66.124 -3.066 46.314 1 49.08 ? H5 PGW 502 C 1 
HETATM 54 H H5A PGW . . . J 3 64.64 -3.591 46.177 1 49.08 ? H5A PGW 502 C 1 
HETATM 55 H H06 PGW . . . J 3 62.345 -0.775 48.148 1 15.05 ? H06 PGW 502 C 1 
HETATM 56 H H06A PGW . . . J 3 60.91 -0.144 48.383 1 15.05 ? H06A PGW 502 C 1 
HETATM 57 H H6 PGW . . . J 3 65.554 -2.116 44.012 1 21.34 ? H6 PGW 502 C 1 
HETATM 58 H H6A PGW . . . J 3 65.331 -1.28 45.333 1 21.34 ? H6A PGW 502 C 1 
HETATM 59 H H07 PGW . . . J 3 61.757 1.783 49.166 1 11.44 ? H07 PGW 502 C 1 
HETATM 60 H H07A PGW . . . J 3 63.148 1.557 48.455 1 11.44 ? H07A PGW 502 C 1 
HETATM 61 H H7 PGW . . . J 3 63.274 -2.88 44.243 1 33.7 ? H7 PGW 502 C 1 
HETATM 62 H H7A PGW . . . J 3 63.417 -1.354 43.862 1 33.7 ? H7A PGW 502 C 1 
HETATM 63 H H08 PGW . . . J 3 62.549 -0.254 50.48 1 12.99 ? H08 PGW 502 C 1 
HETATM 64 H H08A PGW . . . J 3 62.873 1.215 50.965 1 12.99 ? H08A PGW 502 C 1 
HETATM 65 H H8 PGW . . . J 3 63.34 -1.653 46.576 1 31.05 ? H8 PGW 502 C 1 
HETATM 66 H H8A PGW . . . J 3 62.034 -2.253 45.911 1 31.05 ? H8A PGW 502 C 1 
HETATM 67 H H09 PGW . . . J 3 64.973 1.126 50.019 1 12.7 ? H09 PGW 502 C 1 
HETATM 68 H H09A PGW . . . J 3 64.648 -0.255 49.33 1 12.7 ? H09A PGW 502 C 1 
HETATM 69 H H11 PGW . . . J 3 64.999 -1.409 51.185 1 15.28 ? H11 PGW 502 C 1 
HETATM 70 H H11A PGW . . . J 3 64.585 -0.204 52.122 1 15.28 ? H11A PGW 502 C 1 
HETATM 71 H H12 PGW . . . J 3 66.617 0.633 52.155 1 15.24 ? H12 PGW 502 C 1 
HETATM 72 H H12A PGW . . . J 3 66.919 0.191 50.671 1 15.24 ? H12A PGW 502 C 1 
HETATM 73 H H13 PGW . . . J 3 67.289 -2.017 51.42 1 33.88 ? H13 PGW 502 C 1 
HETATM 74 H H13A PGW . . . J 3 67.03 -1.544 52.905 1 33.88 ? H13A PGW 502 C 1 
HETATM 75 H H14 PGW . . . J 3 69.339 -1.672 52.547 1 25.89 ? H14 PGW 502 C 1 
HETATM 76 H H14A PGW . . . J 3 68.947 -0.155 52.779 1 25.89 ? H14A PGW 502 C 1 
HETATM 77 H H14B PGW . . . J 3 69.218 -0.687 51.312 1 25.89 ? H14B PGW 502 C 1 
HETATM 78 H H9 PGW . . . J 3 62.164 0.144 44.76 1 46.29 ? H9 PGW 502 C 1 
HETATM 79 H H10 PGW . . . J 3 61.462 1.373 46.457 1 31.66 ? H10 PGW 502 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           79 
#