data_6BW6
#
_model_server_result.job_id            InT1vsCiy_Y65zUkkblpQA 
_model_server_result.datetime_utc      '2024-11-29 22:24:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bw6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":503}' 
#
_entry.id    6BW6 
#
_exptl.entry_id    6BW6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.49 
_cell.angle_gamma         90 
_cell.entry_id            6BW6 
_cell.length_a            210.615 
_cell.length_b            105.363 
_cell.length_c            148.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BW6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 235 n n 
CAD HAD PGW sing 236 n n 
CAD HADA PGW sing 237 n n 
OAE CAD PGW sing 238 n n 
OAE HOAE PGW sing 239 n n 
OAF C05 PGW sing 240 n n 
OAF HOAF PGW sing 241 n n 
P O13 PGW sing 242 n n 
P O11 PGW sing 243 n n 
C01 O03 PGW sing 244 n n 
C01 C02 PGW sing 245 n n 
C01 H01 PGW sing 246 n n 
C01 H01A PGW sing 247 n n 
C1 C2 PGW sing 248 n n 
O01 C1 PGW sing 249 n n 
C02 O01 PGW sing 250 n n 
C02 H02 PGW sing 251 n n 
C2 C3 PGW sing 252 n n 
C2 H2 PGW sing 253 n n 
C2 H2A PGW sing 254 n n 
O02 C1 PGW doub 255 n n 
C03 C02 PGW sing 256 n n 
C03 H03 PGW sing 257 n n 
C03 H03A PGW sing 258 n n 
C3 C4 PGW sing 259 n n 
C3 H3 PGW sing 260 n n 
C3 H3A PGW sing 261 n n 
C04 C05 PGW sing 262 n n 
C04 O12 PGW sing 263 n n 
C04 H04 PGW sing 264 n n 
C04 H04A PGW sing 265 n n 
C4 C5 PGW sing 266 n n 
C4 H4 PGW sing 267 n n 
C4 H4A PGW sing 268 n n 
O04 C19 PGW doub 269 n n 
C05 H05 PGW sing 270 n n 
C5 C6 PGW sing 271 n n 
C5 H5 PGW sing 272 n n 
C5 H5A PGW sing 273 n n 
C06 C07 PGW sing 274 n n 
C06 H06 PGW sing 275 n n 
C06 H06A PGW sing 276 n n 
C6 C7 PGW sing 277 n n 
C6 H6 PGW sing 278 n n 
C6 H6A PGW sing 279 n n 
C07 H07 PGW sing 280 n n 
C07 H07A PGW sing 281 n n 
C7 C8 PGW sing 282 n n 
C7 H7 PGW sing 283 n n 
C7 H7A PGW sing 284 n n 
C08 C07 PGW sing 285 n n 
C08 H08 PGW sing 286 n n 
C08 H08A PGW sing 287 n n 
C8 C9 PGW sing 288 n n 
C8 H8 PGW sing 289 n n 
C8 H8A PGW sing 290 n n 
C09 C08 PGW sing 291 n n 
C09 C11 PGW sing 292 n n 
C09 H09 PGW sing 293 n n 
C09 H09A PGW sing 294 n n 
C9 C10 PGW doub 295 z n 
C10 C06 PGW sing 296 n n 
C11 H11 PGW sing 297 n n 
C11 H11A PGW sing 298 n n 
O11 C03 PGW sing 299 n n 
C12 C11 PGW sing 300 n n 
C12 H12 PGW sing 301 n n 
C12 H12A PGW sing 302 n n 
O12 P PGW sing 303 n n 
C13 C12 PGW sing 304 n n 
C13 C14 PGW sing 305 n n 
C13 H13 PGW sing 306 n n 
C13 H13A PGW sing 307 n n 
O13 HO13 PGW sing 308 n n 
C14 H14 PGW sing 309 n n 
C14 H14A PGW sing 310 n n 
C14 H14B PGW sing 311 n n 
O14 P PGW doub 312 n n 
C15 C16 PGW sing 313 n n 
C15 H15 PGW sing 314 n n 
C15 H15A PGW sing 315 n n 
C16 H16 PGW sing 316 n n 
C16 H16A PGW sing 317 n n 
C17 C16 PGW sing 318 n n 
C17 C18 PGW sing 319 n n 
C17 H17 PGW sing 320 n n 
C17 H17A PGW sing 321 n n 
C18 C28 PGW sing 322 n n 
C18 H18 PGW sing 323 n n 
C18 H18A PGW sing 324 n n 
C19 O03 PGW sing 325 n n 
C19 C20 PGW sing 326 n n 
C20 C21 PGW sing 327 n n 
C20 H20 PGW sing 328 n n 
C20 H20A PGW sing 329 n n 
C21 C22 PGW sing 330 n n 
C21 H21 PGW sing 331 n n 
C21 H21A PGW sing 332 n n 
C22 C23 PGW sing 333 n n 
C22 H22 PGW sing 334 n n 
C22 H22A PGW sing 335 n n 
C23 C24 PGW sing 336 n n 
C23 H23 PGW sing 337 n n 
C23 H23A PGW sing 338 n n 
C24 C25 PGW sing 339 n n 
C24 H24 PGW sing 340 n n 
C24 H24A PGW sing 341 n n 
C25 C26 PGW sing 342 n n 
C25 H25 PGW sing 343 n n 
C25 H25A PGW sing 344 n n 
C26 C27 PGW sing 345 n n 
C26 H26 PGW sing 346 n n 
C26 H26A PGW sing 347 n n 
C27 C15 PGW sing 348 n n 
C27 H27 PGW sing 349 n n 
C27 H27A PGW sing 350 n n 
C28 H28 PGW sing 351 n n 
C28 H28A PGW sing 352 n n 
C29 H29 PGW sing 353 n n 
C29 H29A PGW sing 354 n n 
C29 H29B PGW sing 355 n n 
C30 C28 PGW sing 356 n n 
C30 C29 PGW sing 357 n n 
C30 H30 PGW sing 358 n n 
C30 H30A PGW sing 359 n n 
C9 H9 PGW sing 360 n n 
C10 H10 PGW sing 361 n n 
#
_atom_sites.entry_id                     6BW6 
_atom_sites.fract_transf_matrix[1][1]    0.004748 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001139 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TUM A 1 501 409 TUM TUM . 
F 3 PGW A 1 502 410 PGW PGW . 
G 3 PGW B 1 501 410 PGW PGW . 
H 2 TUM B 1 502 409 TUM TUM . 
I 2 TUM C 1 501 409 TUM TUM . 
J 3 PGW C 1 502 410 PGW PGW . 
K 3 PGW C 1 503 410 PGW PGW . 
L 2 TUM D 1 501 409 TUM TUM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . K 3 47.803 20.368 55.359 1 78.48 ? CAD PGW 503 C 1 
HETATM 2 O OAE PGW . . . K 3 47.801 19.61 54.182 1 62.59 ? OAE PGW 503 C 1 
HETATM 3 O OAF PGW . . . K 3 46.368 18.796 56.457 1 74.67 ? OAF PGW 503 C 1 
HETATM 4 P P PGW . . . K 3 49.298 20.631 59.895 1 119.99 ? P PGW 503 C 1 
HETATM 5 C C01 PGW . . . K 3 53.376 22.508 61 1 61.87 ? C01 PGW 503 C 1 
HETATM 6 C C1 PGW . . . K 3 54.674 19.514 60.727 1 64.85 ? C1 PGW 503 C 1 
HETATM 7 O O01 PGW . . . K 3 53.749 20.214 61.509 1 79.68 ? O01 PGW 503 C 1 
HETATM 8 C C02 PGW . . . K 3 52.901 21.072 60.802 1 72.03 ? C02 PGW 503 C 1 
HETATM 9 C C2 PGW . . . K 3 55.375 18.292 61.312 1 46.06 ? C2 PGW 503 C 1 
HETATM 10 O O02 PGW . . . K 3 54.937 19.867 59.629 1 60.3 ? O02 PGW 503 C 1 
HETATM 11 C C03 PGW . . . K 3 51.475 20.931 61.332 1 70.49 ? C03 PGW 503 C 1 
HETATM 12 C C3 PGW . . . K 3 55.791 17.284 60.241 1 44.35 ? C3 PGW 503 C 1 
HETATM 13 O O03 PGW . . . K 3 53.101 22.882 62.32 1 60.75 ? O03 PGW 503 C 1 
HETATM 14 C C04 PGW . . . K 3 47.745 20.217 57.846 1 66.78 ? C04 PGW 503 C 1 
HETATM 15 C C4 PGW . . . K 3 54.86 16.075 60.231 1 35.84 ? C4 PGW 503 C 1 
HETATM 16 C C05 PGW . . . K 3 47.623 19.42 56.545 1 76.54 ? C05 PGW 503 C 1 
HETATM 17 C C5 PGW . . . K 3 55.081 15.158 59.032 1 37 ? C5 PGW 503 C 1 
HETATM 18 C C06 PGW . . . K 3 57.259 11.463 55.59 1 18.26 ? C06 PGW 503 C 1 
HETATM 19 C C6 PGW . . . K 3 54.098 13.989 59.039 1 36.27 ? C6 PGW 503 C 1 
HETATM 20 C C07 PGW . . . K 3 58.23 10.329 55.894 1 9.91 ? C07 PGW 503 C 1 
HETATM 21 C C7 PGW . . . K 3 53.833 13.43 57.641 1 39.47 ? C7 PGW 503 C 1 
HETATM 22 C C08 PGW . . . K 3 59.644 10.854 56.146 1 12.47 ? C08 PGW 503 C 1 
HETATM 23 C C8 PGW . . . K 3 55.107 12.947 56.95 1 35.55 ? C8 PGW 503 C 1 
HETATM 24 C C09 PGW . . . K 3 59.945 11.048 57.628 1 14.38 ? C09 PGW 503 C 1 
HETATM 25 C C9 PGW . . . K 3 54.853 11.603 56.264 1 26.15 ? C9 PGW 503 C 1 
HETATM 26 C C10 PGW . . . K 3 55.823 10.937 55.662 1 19.1 ? C10 PGW 503 C 1 
HETATM 27 C C11 PGW . . . K 3 61.226 11.851 57.845 1 18.56 ? C11 PGW 503 C 1 
HETATM 28 O O11 PGW . . . K 3 50.751 20.101 60.466 1 77.26 ? O11 PGW 503 C 1 
HETATM 29 C C12 PGW . . . K 3 61.802 11.646 59.242 1 12.88 ? C12 PGW 503 C 1 
HETATM 30 O O12 PGW . . . K 3 48.951 19.882 58.471 1 74.3 ? O12 PGW 503 C 1 
HETATM 31 C C13 PGW . . . K 3 62.713 12.797 59.66 1 23.85 ? C13 PGW 503 C 1 
HETATM 32 O O13 PGW . . . K 3 49.356 22.121 59.669 1 92.95 ? O13 PGW 503 C 1 
HETATM 33 C C14 PGW . . . K 3 63.346 12.566 61.032 1 33 ? C14 PGW 503 C 1 
HETATM 34 O O14 PGW . . . K 3 48.217 20.32 60.903 1 72.27 ? O14 PGW 503 C 1 
HETATM 35 H HAD PGW . . . K 3 48.647 20.839 55.443 1 94.17 ? HAD PGW 503 C 1 
HETATM 36 H HADA PGW . . . K 3 47.073 21.006 55.338 1 94.17 ? HADA PGW 503 C 1 
HETATM 37 H HOAE PGW . . . K 3 47.62 18.8 54.367 1 75.11 ? HOAE PGW 503 C 1 
HETATM 38 H HOAF PGW . . . K 3 45.891 19.024 57.122 1 89.61 ? HOAF PGW 503 C 1 
HETATM 39 H H01 PGW . . . K 3 54.331 22.562 60.837 1 74.24 ? H01 PGW 503 C 1 
HETATM 40 H H01A PGW . . . K 3 52.906 23.096 60.388 1 74.24 ? H01A PGW 503 C 1 
HETATM 41 H H02 PGW . . . K 3 52.922 20.848 59.859 1 86.43 ? H02 PGW 503 C 1 
HETATM 42 H H2 PGW . . . K 3 54.774 17.856 61.936 1 55.27 ? H2 PGW 503 C 1 
HETATM 43 H H2A PGW . . . K 3 56.166 18.585 61.791 1 55.27 ? H2A PGW 503 C 1 
HETATM 44 H H03 PGW . . . K 3 51.053 21.804 61.376 1 84.58 ? H03 PGW 503 C 1 
HETATM 45 H H03A PGW . . . K 3 51.496 20.536 62.218 1 84.58 ? H03A PGW 503 C 1 
HETATM 46 H H3 PGW . . . K 3 56.697 16.986 60.42 1 53.22 ? H3 PGW 503 C 1 
HETATM 47 H H3A PGW . . . K 3 55.763 17.713 59.371 1 53.22 ? H3A PGW 503 C 1 
HETATM 48 H H04 PGW . . . K 3 47.734 21.166 57.648 1 80.14 ? H04 PGW 503 C 1 
HETATM 49 H H04A PGW . . . K 3 47.004 19.998 58.432 1 80.14 ? H04A PGW 503 C 1 
HETATM 50 H H4 PGW . . . K 3 53.942 16.389 60.218 1 43.01 ? H4 PGW 503 C 1 
HETATM 51 H H4A PGW . . . K 3 55.004 15.565 61.044 1 43.01 ? H4A PGW 503 C 1 
HETATM 52 H H05 PGW . . . K 3 48.317 18.744 56.52 1 91.85 ? H05 PGW 503 C 1 
HETATM 53 H H5 PGW . . . K 3 55.986 14.812 59.059 1 44.4 ? H5 PGW 503 C 1 
HETATM 54 H H5A PGW . . . K 3 54.961 15.668 58.216 1 44.4 ? H5A PGW 503 C 1 
HETATM 55 H H06 PGW . . . K 3 57.376 12.173 56.241 1 21.92 ? H06 PGW 503 C 1 
HETATM 56 H H06A PGW . . . K 3 57.433 11.809 54.701 1 21.92 ? H06A PGW 503 C 1 
HETATM 57 H H6 PGW . . . K 3 53.258 14.289 59.42 1 43.52 ? H6 PGW 503 C 1 
HETATM 58 H H6A PGW . . . K 3 54.459 13.281 59.595 1 43.52 ? H6A PGW 503 C 1 
HETATM 59 H H07 PGW . . . K 3 58.249 9.718 55.141 1 11.9 ? H07 PGW 503 C 1 
HETATM 60 H H07A PGW . . . K 3 57.924 9.853 56.681 1 11.9 ? H07A PGW 503 C 1 
HETATM 61 H H7 PGW . . . K 3 53.427 14.124 57.098 1 47.36 ? H7 PGW 503 C 1 
HETATM 62 H H7A PGW . . . K 3 53.215 12.686 57.713 1 47.36 ? H7A PGW 503 C 1 
HETATM 63 H H08 PGW . . . K 3 59.748 11.704 55.691 1 14.97 ? H08 PGW 503 C 1 
HETATM 64 H H08A PGW . . . K 3 60.282 10.222 55.778 1 14.97 ? H08A PGW 503 C 1 
HETATM 65 H H8 PGW . . . K 3 55.811 12.843 57.609 1 42.66 ? H8 PGW 503 C 1 
HETATM 66 H H8A PGW . . . K 3 55.381 13.6 56.287 1 42.66 ? H8A PGW 503 C 1 
HETATM 67 H H09 PGW . . . K 3 60.042 10.179 58.047 1 17.26 ? H09 PGW 503 C 1 
HETATM 68 H H09A PGW . . . K 3 59.203 11.517 58.042 1 17.26 ? H09A PGW 503 C 1 
HETATM 69 H H11 PGW . . . K 3 61.031 12.793 57.72 1 22.27 ? H11 PGW 503 C 1 
HETATM 70 H H11A PGW . . . K 3 61.885 11.576 57.189 1 22.27 ? H11A PGW 503 C 1 
HETATM 71 H H12 PGW . . . K 3 62.31 10.82 59.255 1 15.45 ? H12 PGW 503 C 1 
HETATM 72 H H12A PGW . . . K 3 61.071 11.577 59.877 1 15.45 ? H12A PGW 503 C 1 
HETATM 73 H H13 PGW . . . K 3 62.194 13.615 59.687 1 28.62 ? H13 PGW 503 C 1 
HETATM 74 H H13A PGW . . . K 3 63.418 12.894 59.001 1 28.62 ? H13A PGW 503 C 1 
HETATM 75 H H14 PGW . . . K 3 63.943 13.302 61.24 1 39.6 ? H14 PGW 503 C 1 
HETATM 76 H H14A PGW . . . K 3 63.848 11.736 61.021 1 39.6 ? H14A PGW 503 C 1 
HETATM 77 H H14B PGW . . . K 3 62.65 12.514 61.705 1 39.6 ? H14B PGW 503 C 1 
HETATM 78 H H9 PGW . . . K 3 53.996 11.241 56.28 1 31.38 ? H9 PGW 503 C 1 
HETATM 79 H H10 PGW . . . K 3 55.623 10.124 55.258 1 22.92 ? H10 PGW 503 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           79 
#