data_6BXK # _model_server_result.job_id NmEQwQkWCIDinxc31dnCOA _model_server_result.datetime_utc '2024-11-29 16:45:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 6BXK # _exptl.entry_id 6BXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXK _cell.length_a 55.509 _cell.length_b 80.458 _cell.length_c 161.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 95 A CYS 59 1_555 E FE1 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A SG CYS 199 A CYS 163 1_555 E FE2 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 323 A CYS 287 1_555 E FE3 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 D O4 SO4 . A SO4 402 1_555 E FE4 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 B SG CYS 95 B CYS 59 1_555 H FE1 SF4 . B SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 B SG CYS 199 B CYS 163 1_555 H FE2 SF4 . B SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 B SG CYS 323 B CYS 287 1_555 H FE3 SF4 . B SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 G O3 SO4 . B SO4 402 1_555 H FE4 SF4 . B SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 327 n n FE1 S3 SF4 sing 328 n n FE1 S4 SF4 sing 329 n n FE2 S1 SF4 sing 330 n n FE2 S3 SF4 sing 331 n n FE2 S4 SF4 sing 332 n n FE3 S1 SF4 sing 333 n n FE3 S2 SF4 sing 334 n n FE3 S4 SF4 sing 335 n n FE4 S1 SF4 sing 336 n n FE4 S2 SF4 sing 337 n n FE4 S3 SF4 sing 338 n n # _atom_sites.entry_id 6BXK _atom_sites.fract_transf_matrix[1][1] 0.018015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTA A 1 401 1 MTA MTA . D 3 SO4 A 1 402 1 SO4 SO4 . E 4 SF4 A 1 403 1 SF4 SF4 . F 2 MTA B 1 401 2 MTA MTA . G 3 SO4 B 1 402 2 SO4 SO4 . H 4 SF4 B 1 403 2 SF4 SF4 . I 5 HOH A 1 501 26 HOH HOH . I 5 HOH A 2 502 44 HOH HOH . I 5 HOH A 3 503 32 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 9 HOH HOH . I 5 HOH A 6 506 15 HOH HOH . I 5 HOH A 7 507 14 HOH HOH . I 5 HOH A 8 508 23 HOH HOH . I 5 HOH A 9 509 39 HOH HOH . I 5 HOH A 10 510 12 HOH HOH . I 5 HOH A 11 511 30 HOH HOH . I 5 HOH A 12 512 29 HOH HOH . I 5 HOH A 13 513 3 HOH HOH . I 5 HOH A 14 514 47 HOH HOH . I 5 HOH A 15 515 25 HOH HOH . I 5 HOH A 16 516 42 HOH HOH . I 5 HOH A 17 517 33 HOH HOH . I 5 HOH A 18 518 53 HOH HOH . I 5 HOH A 19 519 19 HOH HOH . I 5 HOH A 20 520 43 HOH HOH . I 5 HOH A 21 521 48 HOH HOH . I 5 HOH A 22 522 45 HOH HOH . I 5 HOH A 23 523 40 HOH HOH . I 5 HOH A 24 524 50 HOH HOH . I 5 HOH A 25 525 49 HOH HOH . I 5 HOH A 26 526 46 HOH HOH . J 5 HOH B 1 501 4 HOH HOH . J 5 HOH B 2 502 18 HOH HOH . J 5 HOH B 3 503 5 HOH HOH . J 5 HOH B 4 504 13 HOH HOH . J 5 HOH B 5 505 16 HOH HOH . J 5 HOH B 6 506 11 HOH HOH . J 5 HOH B 7 507 17 HOH HOH . J 5 HOH B 8 508 1 HOH HOH . J 5 HOH B 9 509 51 HOH HOH . J 5 HOH B 10 510 36 HOH HOH . J 5 HOH B 11 511 7 HOH HOH . J 5 HOH B 12 512 38 HOH HOH . J 5 HOH B 13 513 35 HOH HOH . J 5 HOH B 14 514 10 HOH HOH . J 5 HOH B 15 515 37 HOH HOH . J 5 HOH B 16 516 8 HOH HOH . J 5 HOH B 17 517 6 HOH HOH . J 5 HOH B 18 518 41 HOH HOH . J 5 HOH B 19 519 28 HOH HOH . J 5 HOH B 20 520 21 HOH HOH . J 5 HOH B 21 521 27 HOH HOH . J 5 HOH B 22 522 20 HOH HOH . J 5 HOH B 23 523 24 HOH HOH . J 5 HOH B 24 524 34 HOH HOH . J 5 HOH B 25 525 22 HOH HOH . J 5 HOH B 26 526 31 HOH HOH . J 5 HOH B 27 527 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . H 4 7.321 34.622 -0.156 0.6 169.65 ? FE1 SF4 403 B 1 HETATM 2 FE FE2 SF4 . . . H 4 5.846 33.839 -2.409 0.6 153.38 ? FE2 SF4 403 B 1 HETATM 3 FE FE3 SF4 . . . H 4 8.122 32.447 -1.729 0.6 111.67 ? FE3 SF4 403 B 1 HETATM 4 FE FE4 SF4 . . . H 4 8.375 35.006 -2.658 0.6 185.13 ? FE4 SF4 403 B 1 HETATM 5 S S1 SF4 . . . H 4 7.648 33.191 -3.762 0.6 112.63 ? S1 SF4 403 B 1 HETATM 6 S S2 SF4 . . . H 4 9.408 34.007 -0.828 0.6 91.54 ? S2 SF4 403 B 1 HETATM 7 S S3 SF4 . . . H 4 6.489 35.939 -1.825 0.6 79.48 ? S3 SF4 403 B 1 HETATM 8 S S4 SF4 . . . H 4 6.281 32.684 -0.437 0.6 95.65 ? S4 SF4 403 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #